Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018094

Physical Location & Seq

Genomic Coordinates Forward (+)

14905325 .. 14908567

Gene Structure 3243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTGGGGATGGAAGAAGTTTGAAGCAGGTGAACTAGAAGAACTAATGGTAGTATGTGGTATAGATGAAAAAGATAAAGAGGCAGCAGAGAGAATGGTAAAAGTAGCTATATGGTGTGTTCAGTATAGCTCTGAGTTGAGGCCTTTGATGAGTGTAGTGGTGAAAATGCTGGAAGGATCACTTGAAATTCCTAAACCTTCAATTAACCCATTTCAGTACTTGATGCCAGGTACTCCAATCGTGGCTGCATTACCCGCATATAGCACTAGTGCATTCGACACTGATTCCTCTCAAAAGATAACTGGACATAGCTTCTTGCGTGGTTCTCCTATTATGAGGAGATACGAAATTGAAATAGCATCTAAAGAAACAAGAAGAACGAAAGCACAAGAGAAAGGGCCACACAGCAAGGATCAACAGGAGCAAAAAACTCGCCAAACCAGTTTCTCTCAAAAAGAATATTTACCAAAAACGAAGAGATGGAGTTCTGCCTTTGCGCTTCTTGGCCGTGAGATTCTCAAACTGTTTCTTGAGGTCACGATTCAGTTGGGGGAGTTTGTCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.42

Weight (kDa)

8.78

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018094)

Species	Orthologous Gene IDs
malus_domestica	MD13G1250000.v1.1 MD16G1220200.v1.1
pyrus_communis	pycom16g18400
rosa_samantha	Rh4AG106600 Rh4AG106800 Rh4AG106900 Rh4CG115600 Rh4CG115700 Rh4CG115800 Rh4DG098400 Rh4DG098700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	184, 420
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	186
AfaI	GTAC	2 cut(s)	218, 232
AgsI	TTSAA	4 cut(s)	23, 185, 201, 353
AhlI	ACTAGT	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	3 cut(s)	107, 129, 312
AluI	AGCT	3 cut(s)	107, 129, 312
AlwI	GGATC	2 cut(s)	184, 420
AoxI	GGCC	3 cut(s)	140, 398, 505
ApeKI	GCWGC	2 cut(s)	83, 245
ApoI	RAATTY	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	41, 172
BbvI	GCAGC	2 cut(s)	95, 232
BccI	CCATC	2 cut(s)	3, 474
BceAI	ACGGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	1 cut(s)	228
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	2 cut(s)	35, 267
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	84, 246
BlsI	GCNGC	2 cut(s)	85, 247
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	213, 368
BpuEI	CTTGAG	1 cut(s)	551
Bse1I	ACTGG	2 cut(s)	307, 441
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	307, 441
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	95, 232
BshFI	GGCC	3 cut(s)	142, 400, 507
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	142, 400, 507
Bsp143I	GATC	2 cut(s)	176, 412
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	3 cut(s)	142, 400, 507
BspCNI	CTCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	184, 420
BsrI	ACTGG	2 cut(s)	307, 441
BssMI	GATC	2 cut(s)	176, 412
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	1 cut(s)	470
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	2 cut(s)	179, 415
BstMBI	GATC	2 cut(s)	176, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	95, 232
BsuRI	GGCC	3 cut(s)	142, 400, 507
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	279
BveI	ACCTGC	1 cut(s)	17
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	217, 231
CviJI	RGCY	7 cut(s)	107, 129, 142, 245, 312, 400, 507
CviKI_1	RGCY	7 cut(s)	107, 129, 142, 245, 312, 400, 507
CviQI	GTAC	2 cut(s)	217, 231
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	178, 414
DpnII	GATC	2 cut(s)	176, 412
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco147I	AGGCCT	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	226
FaiI	YATR	9 cut(s)	55, 62, 110, 112, 126, 259, 261, 309, 335
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	84, 246
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	84, 246
FspBI	CTAG	2 cut(s)	35, 267
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	2 cut(s)	84, 246
HaeIII	GGCC	3 cut(s)	142, 400, 507
HhaI	GCGC	1 cut(s)	499
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HinfI	GANTC	3 cut(s)	284, 514, 541
HphI	GGTGA	2 cut(s)	41, 172
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	530, 538
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	167, 207
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4V	TGCA	2 cut(s)	248, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	132
HspAI	GCGC	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	176, 412
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	7 cut(s)	12, 155, 213, 240, 288, 404, 454
Lsp1109I	GCAGC	2 cut(s)	95, 232
LweI	GCATC	2 cut(s)	213, 368
MaeI	CTAG	2 cut(s)	35, 267
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	178, 414
MboI	GATC	2 cut(s)	176, 412
MboII	GAAGA	4 cut(s)	25, 50, 387, 487
MluCI	AATT	3 cut(s)	186, 201, 348
MnlI	CCTC	5 cut(s)	73, 132, 298, 330, 526
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	176, 412
NmuCI	GTSAC	1 cut(s)	535
PaqCI	CACCTGC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	142
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	284, 514, 541
PkrI	GCNGC	2 cut(s)	85, 247
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	218, 232
RsaNI	GTAC	2 cut(s)	217, 231
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	84, 246
Sau3AI	GATC	2 cut(s)	176, 412
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	7 cut(s)	31, 109, 131, 199, 232, 314, 537
SfaNI	GCATC	2 cut(s)	213, 368
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
SpeI	ACTAGT	1 cut(s)	266
Sse9I	AATT	3 cut(s)	186, 201, 348
SseBI	AGGCCT	1 cut(s)	142
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	2 cut(s)	35, 267
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	186, 201, 348
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	284, 514, 541
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	83, 245
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	186
XspI	CTAG	2 cut(s)	35, 267
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.