Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011146

Physical Location & Seq

Genomic Coordinates Forward (+)

16092030 .. 16094853

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGGGACAGCAATCATGGCTGCCGAGGCTCTCGTTCAGGATCGCCACCATAATGATGTGCTTGCTCAACCTGATTACGGCGCTTCTACTGCTTCAGGGCTTTCTTTCCTCCGCTTCTTCTCGCTCCGAACTTTCCGCCTCTCACCTCAATTCAGCTGCACTTAGGTATGTAAGAGAATCTGAAGAAATTCGTTTTGCTATGCGACCCTTGGAACTGATAAAAAGAGTGAAGGAAATCCAACAAGAAGCATATGAAAAACCAGAAACAGCTAAAGAGAAAGACACAAGGCAGACCGTTGCAGTTGACCTTTCCAAGAGATTGAAGGATCTGCATTATGTTAATGATGCAACCAGCTTCAAAGCCCTGGAAGAGTGGCGTAAACGAAAGATGGAACGAGCAAGACTACGTCAACTAGAGAAAAATGGAACGCTCGCAACTCAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.27

Weight (kDa)

9.75

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04555
fragaria_vesca	FvH4_4g05040 FvH4_4g05040
malus_domestica	MD13G1223900.v1.1 MD16G1228700.v1.1
prunus_persica	Prupe.1G050700_v2.0.a1
pyrus_communis	pycom13g19780 pycom16g19140
rosa_chinensis	RchiOBHm_Chr4g0395941
rosa_laevigata	RLG00000009587
rosa_multiflora	Rmu_sc0001103.1_g000010
rosa_roxburghii	Rroxscaffold_5G00340690
rosa_rugosa	Rorug03G0353300 Rorug03G0353400
rosa_samantha	Rh4AG063000 Rh4AG064000 Rh4AG066600 Rh4BG062800 Rh4CG069100 Rh4DG059000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 138
AclWI	GGATC	2 cut(s)	50, 336
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	2 cut(s)	80, 204
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	325, 361
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	3 cut(s)	158, 272, 357
AluI	AGCT	3 cut(s)	158, 272, 357
AlwI	GGATC	2 cut(s)	50, 336
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	22, 158
ApoI	RAATTY	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	9, 145
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	2 cut(s)	23, 159
BlsI	GCNGC	2 cut(s)	24, 160
Bme1390I	CCNGG	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	337
BsaJI	CCNNGG	3 cut(s)	26, 210, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	26, 210, 366
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	9, 145
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	42, 328
BspACI	CCGC	2 cut(s)	114, 138
BspANI	GGCC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	50, 336
BssECI	CCNNGG	3 cut(s)	26, 210, 366
BssMI	GATC	2 cut(s)	42, 328
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	65, 435
BstDEI	CTNAG	2 cut(s)	164, 441
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	45, 331
BstMBI	GATC	2 cut(s)	42, 328
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 28, 91, 443
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	9, 145
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	446
Cac8I	GCNNGC	2 cut(s)	65, 435
CfoI	GCGC	1 cut(s)	85
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	8 cut(s)	22, 31, 102, 158, 272, 357, 365, 446
CviKI_1	RGCY	8 cut(s)	22, 31, 102, 158, 272, 357, 365, 446
DdeI	CTNAG	2 cut(s)	164, 441
DpnI	GATC	2 cut(s)	44, 330
DpnII	GATC	2 cut(s)	42, 328
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	446
Eco57I	CTGAAG	2 cut(s)	80, 204
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	21
FaiI	YATR	7 cut(s)	19, 53, 171, 203, 253, 255, 339
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	17
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	23, 159
Fsp4HI	GCNGC	2 cut(s)	23, 159
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	23, 159
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	2 cut(s)	307, 413
HindII	GTYRAC	2 cut(s)	307, 413
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	307, 383, 413
Hpy188I	TCNGA	2 cut(s)	130, 184
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	3 cut(s)	307, 383, 413
HpyAV	CCTTC	2 cut(s)	226, 319
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	161, 302, 334, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 28, 91, 443
HpyF3I	CTNAG	2 cut(s)	164, 441
HpySE526I	ACGT	1 cut(s)	409
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	42, 328
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	8 cut(s)	25, 83, 86, 276, 353, 367, 380, 428
Lsp1109I	GCAGC	2 cut(s)	9, 145
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	409
MalI	GATC	2 cut(s)	44, 330
MboI	GATC	2 cut(s)	42, 328
MboII	GAAGA	3 cut(s)	111, 197, 383
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	2 cut(s)	151, 189
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	21, 121, 151, 158
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	2 cut(s)	53, 56
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	4 cut(s)	19, 28, 91, 443
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	42, 328
NlaIII	CATG	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	24, 160
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	158
RseI	CAYNNNNRTG	2 cut(s)	53, 56
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	23, 159
Sau3AI	GATC	2 cut(s)	42, 328
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	8 cut(s)	75, 150, 160, 170, 274, 312, 359, 412
SfaNI	GCATC	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	53, 56
Sse9I	AATT	2 cut(s)	151, 189
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	2 cut(s)	114, 138
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	412
TasI	AATT	2 cut(s)	151, 189
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	2 cut(s)	22, 158
TspDTI	ATGAA	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	408
XapI	RAATTY	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.