Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Reverse (-)

16728500 .. 16729100

Gene Structure 601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGAAAACAAGAAGGCTCACAAATGAAGACAGTCAGAAATAAGGTTTCTTTTCCCGGTCTTGCTTTCCATATGTTCCTTGCGAGATCTTATACTGGAGTTCTTACAGAGTTCTTTACAAAATTGCTTTTGAGTCTAAAGATATTTTCAATTGAGGAAAGATGGGAGCAGCTACAAACTATGTTGCAATCAAGAAAACTTAAGCTGCAAGGACTGCATAGGTGCATTGAAGAGATTGTGTTCTCTTTTACCTACCCTAGGCTTGACATGGAGGTTTTGAAACACATGAACCATTTGTTAAAGGCACATTTCTGTGTACACCTAAAAACAGGTCGTGTTTGTGTTCCAATTGATCGAAATCATTATGAGGACTTCTATCCTACTGCAGTACTAACCCTTTCCACTCTCTTAGAACAACTCAACATTGGCGGTTTGAAAGTAGAAGGTGATAATGAATGGGACAGAACGTCACTCGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

161

Amino Acids

18.63

Weight (kDa)

9.01

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	22 - 118	3.9e-12	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	318, 390
AfiI	CCNNNNNNNGG	1 cut(s)	258
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	150, 230, 280, 436
AhdI	GACNNNNNGTC	1 cut(s)	466
AluBI	AGCT	2 cut(s)	172, 205
AluI	AGCT	2 cut(s)	172, 205
Ama87I	CYCGRG	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	169, 205
AspA2I	CCTAGG	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	473
AvrII	CCTAGG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	181, 192
BccI	CCATC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	2 cut(s)	170, 206
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	171, 207
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	57
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	473
BmrFI	CCNGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	257
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	181, 192
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	86, 352
BspACI	CCGC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	86, 352
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	225
BstAFI	CTTAAG	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	89, 355
BstMBI	GATC	2 cut(s)	86, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	181, 192
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	317, 389
CviAII	CATG	2 cut(s)	268, 286
CviJI	RGCY	4 cut(s)	18, 172, 205, 262
CviKI_1	RGCY	4 cut(s)	18, 172, 205, 262
CviQI	GTAC	2 cut(s)	317, 389
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	88, 354
DpnII	GATC	2 cut(s)	86, 352
DriI	GACNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	2 cut(s)	271, 289
FaiI	YATR	8 cut(s)	72, 74, 93, 182, 219, 269, 287, 366
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	2 cut(s)	267, 285
FauNDI	CATATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	170, 206
Fsp4HI	GCNGC	2 cut(s)	170, 206
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	170, 206
GsuI	CTGGAG	1 cut(s)	117
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	271, 289
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	317, 319
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	2 cut(s)	192, 475
Hpy8I	GTNNAC	2 cut(s)	317, 319
HpyAV	CCTTC	2 cut(s)	8, 437
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	5 cut(s)	187, 208, 217, 225, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	409
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	2 cut(s)	271, 289
Kzo9I	GATC	2 cut(s)	86, 352
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	70, 81, 315
Lsp1109I	GCAGC	2 cut(s)	181, 192
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	1 cut(s)	468
MalI	GATC	2 cut(s)	88, 354
MboI	GATC	2 cut(s)	86, 352
MboII	GAAGA	2 cut(s)	40, 242
MfeI	CAATTG	2 cut(s)	150, 348
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	3 cut(s)	122, 150, 348
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	148, 265, 361
MseI	TTAA	2 cut(s)	201, 299
MslI	CAYNNNNRTG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	2 cut(s)	150, 348
MwoI	GCNNNNNNNGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	2 cut(s)	86, 352
NlaIII	CATG	2 cut(s)	271, 289
NmuCI	GTSAC	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	171, 207
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	318, 390
RsaNI	GTAC	2 cut(s)	317, 389
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	201, 299
SatI	GCNGC	2 cut(s)	170, 206
Sau3AI	GATC	2 cut(s)	86, 352
ScaI	AGTACT	1 cut(s)	390
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	122, 150, 348
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	355
TasI	AATT	3 cut(s)	122, 150, 348
TatI	WGTACW	2 cut(s)	316, 388
Tru1I	TTAA	2 cut(s)	201, 299
Tru9I	TTAA	2 cut(s)	201, 299
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	2 cut(s)	169, 205
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	3 cut(s)	41, 302, 468
Vha464I	CTTAAG	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	256
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.