Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Reverse (-)

17361448 .. 17366781

Gene Structure 5334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGTCATCTTCAACCGCGGCTGTCCCACAAATGCAGGAAATTATGCTGGAGTTTCGCGCTGGTAAGATGGTTTTTGAGGGGAAAAAGGTTGCTCCTGATACTCGTAAAGGACTTGTTCGCATAGCAAGGGGTGATGAGGGGTTGGTGCATTTTCAGTGGCTTGATCGTAGTCTAAATGTTGTGGAAGATGATCAGATTATATTTCCTGACGAGGCAGTTTTCGAAAAGGTTAATCAAGTGTCAGGAAGGGTCTACATATTGAAGTTCACCACCGATGACAGGAAGTTTTTCTTTTGGATGCAGGAGCCTAAAGCTGAAGGTGACTCACAGTTGTGTAGCTCTGTTAATTACTACCTCAATCGACCATTAGCAGAGTTCCTTGACGAAGAAGGGCCTGATGGTTCTATTCCCTTACAAGTTTCTGAAGATATGGTTGATGATGATATTTCATCAAGAGCTGGAATCTTGCTGGAACCAAACCTGGGTGGGGAAGTAAGTAGCGATGTAACTTCTTCAGCTGGCCCAGTGAAATTGGAAGATCTTCAAAGAATCTTAAGTAATATTGAGCCAGCCGATAGGGCTGTGAATACAGATGAAGGCCTGAGTTTGGAGGATATATTGAAACCTGAGTTGATTATGCCATTGATTGAGACATTGCCACTGGAACAGGGTTTAGGTTCTTACTTACCTGAGGGTCAATGGTCTCCTGAGGATGTATTGGAGTTGCTGCAGAGTCCACCTTTCCGCCAACAAATGGATTCCTTTGCTTATGTACTTCGGACAGGACAGATAGATTTGACGCAGTTTGGTATTGACCCAAGTAAATACAAGTTCACTGTATTGTCCTTTCTTGAGGCGCTTGATGATTCGGTTTCAAAGATGTCAGAGTCTGAGGAGTCGAGGCAGGACAGGAAGGATTTAAGATCTGAATCTTGTAACCGTAATGACCCCATGGATGAATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

324

Amino Acids

36.27

Weight (kDa)

4.33

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rpn13_ADRM1_Pru	PF04683	17 - 113	1.2e-31	Proteasome complex subunit Rpn13, Pru domain
RPN13_C	PF16550	183 - 288	2.7e-25	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	2 cut(s)	20, 60
AciI	CCGC	3 cut(s)	18, 20, 748
AcuI	CTGAAG	3 cut(s)	339, 447, 501
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	5 cut(s)	15, 265, 548, 625, 879
AjnI	CCWGG	1 cut(s)	483
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	317, 342, 461, 521
AluI	AGCT	4 cut(s)	317, 342, 461, 521
Alw26I	GTCTC	2 cut(s)	647, 711
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	3 cut(s)	395, 523, 601
ApeKI	GCWGC	1 cut(s)	730
Asp700I	GAANNNNTTC	2 cut(s)	290, 543
AspLEI	GCGC	2 cut(s)	62, 862
AspS9I	GGNCC	2 cut(s)	395, 524
AsuHPI	GGTGA	3 cut(s)	146, 262, 335
AsuII	TTCGAA	1 cut(s)	225
AxyI	CCTNAGG	2 cut(s)	693, 711
BbvI	GCAGC	1 cut(s)	717
BccI	CCATC	2 cut(s)	64, 395
BciT130I	CCWGG	1 cut(s)	485
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	647, 711
BfmI	CTRYAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	863
BfrI	CTTAAG	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	2 cut(s)	541, 926
BisI	GCNGC	2 cut(s)	21, 731
BlsI	GCNGC	2 cut(s)	22, 732
Bme1390I	CCNGG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	395, 524
BmiI	GGNNCC	2 cut(s)	309, 477
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	875
BsaBI	GATNNNNATC	1 cut(s)	931
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	3 cut(s)	18, 484, 954
Bsc4I	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
Bse1I	ACTGG	2 cut(s)	527, 669
Bse21I	CCTNAGG	2 cut(s)	693, 711
Bse3DI	GCAATG	1 cut(s)	656
Bse8I	GATNNNNATC	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	18, 484, 954
BseGI	GGATG	3 cut(s)	306, 721, 964
BseJI	GATNNNNATC	1 cut(s)	931
BseLI	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
BseMI	GCAATG	1 cut(s)	656
BseMII	CTCAG	5 cut(s)	596, 621, 684, 702, 885
BseNI	ACTGG	2 cut(s)	527, 669
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	20, 60
BshFI	GGCC	3 cut(s)	397, 525, 603
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
BsmAI	GTCTC	2 cut(s)	647, 711
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	397, 525, 603
Bso31I	GGTCTC	1 cut(s)	711
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	166, 193, 541, 926
Bsp19I	CCATGG	1 cut(s)	954
BspACI	CCGC	3 cut(s)	18, 20, 748
BspANI	GGCC	3 cut(s)	397, 525, 603
BspCNI	CTCAG	5 cut(s)	597, 622, 685, 703, 886
BspFNI	CGCG	2 cut(s)	20, 60
BspLI	GGNNCC	2 cut(s)	309, 477
BspMAI	CTGCAG	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	711
BsrDI	GCAATG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	527, 669
BssECI	CCNNGG	3 cut(s)	18, 484, 954
BssMI	GATC	4 cut(s)	166, 193, 541, 926
BssT1I	CCWWGG	1 cut(s)	954
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	333, 841, 944
BstAFI	CTTAAG	1 cut(s)	556
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	523, 573
BstDEI	CTNAG	5 cut(s)	605, 630, 693, 711, 894
BstDSI	CCRYGG	2 cut(s)	18, 954
BstF5I	GGATG	3 cut(s)	306, 721, 964
BstFNI	CGCG	2 cut(s)	20, 60
BstH2I	RGCGCY	1 cut(s)	863
BstHHI	GCGC	2 cut(s)	62, 862
BstKTI	GATC	4 cut(s)	169, 196, 544, 929
BstMAI	GTCTC	2 cut(s)	647, 711
BstMBI	GATC	4 cut(s)	166, 193, 541, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	731
BstUI	CGCG	2 cut(s)	20, 60
BstV1I	GCAGC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	541, 926
BstYI	RGATCY	2 cut(s)	541, 926
Bsu36I	CCTNAGG	2 cut(s)	693, 711
BsuRI	GGCC	3 cut(s)	397, 525, 603
BtgI	CCRYGG	2 cut(s)	18, 954
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	306, 721, 964
BtsIMutI	CAGTG	4 cut(s)	164, 534, 662, 837
Cac8I	GCNNGC	2 cut(s)	523, 573
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	2 cut(s)	62, 862
Cfr13I	GGNCC	2 cut(s)	395, 524
Cfr42I	CCGCGG	1 cut(s)	21
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	1 cut(s)	955
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	5 cut(s)	605, 630, 693, 711, 894
DpnI	GATC	4 cut(s)	168, 195, 543, 928
DpnII	GATC	4 cut(s)	166, 193, 541, 926
EciI	GGCGGA	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	954
Eco147I	AGGCCT	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	711
Eco57I	CTGAAG	3 cut(s)	339, 447, 501
Eco81I	CCTNAGG	2 cut(s)	693, 711
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	954
FaeI	CATG	1 cut(s)	958
FaiI	YATR	9 cut(s)	47, 125, 203, 260, 434, 620, 641, 774, 956
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	954
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	21, 731
FokI	GGATG	2 cut(s)	313, 728
Fsp4HI	GCNGC	2 cut(s)	21, 731
GlaI	GCGC	2 cut(s)	61, 861
GluI	GCNGC	2 cut(s)	21, 731
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	863
HaeIII	GGCC	3 cut(s)	397, 525, 603
HgaI	GACGC	1 cut(s)	811
HhaI	GCGC	2 cut(s)	62, 862
Hin1II	CATG	1 cut(s)	958
Hin6I	GCGC	2 cut(s)	60, 860
HinP1I	GCGC	2 cut(s)	60, 860
HphI	GGTGA	3 cut(s)	146, 262, 335
Hpy166II	GTNNAC	4 cut(s)	256, 270, 740, 837
Hpy188I	TCNGA	6 cut(s)	198, 427, 783, 889, 895, 931
Hpy188III	TCNNGA	6 cut(s)	98, 209, 246, 456, 710, 854
Hpy8I	GTNNAC	4 cut(s)	256, 270, 740, 837
HpyAV	CCTTC	5 cut(s)	243, 314, 386, 593, 910
HpyCH4III	ACNGT	3 cut(s)	333, 841, 944
HpyCH4V	TGCA	4 cut(s)	37, 151, 304, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	5 cut(s)	605, 630, 693, 711, 894
Hsp92II	CATG	1 cut(s)	958
HspAI	GCGC	2 cut(s)	60, 860
Ksp22I	TGATCA	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	166, 193, 541, 926
LmnI	GCTCC	2 cut(s)	100, 307
Lsp1109I	GCAGC	1 cut(s)	717
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	323, 508, 938
MalI	GATC	4 cut(s)	168, 195, 543, 928
MboI	GATC	4 cut(s)	166, 193, 541, 926
MboII	GAAGA	7 cut(s)	3, 200, 401, 440, 507, 536, 551
MflI	RGATCY	2 cut(s)	541, 926
MluCI	AATT	3 cut(s)	42, 349, 533
MlyI	GAGTC	4 cut(s)	320, 745, 899, 908
MroXI	GAANNNNTTC	2 cut(s)	290, 543
MseI	TTAA	4 cut(s)	234, 348, 557, 923
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	2 cut(s)	20, 521
MspCI	CTTAAG	1 cut(s)	556
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	2 cut(s)	20, 60
MwoI	GCNNNNNNNGC	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	954
NdeII	GATC	4 cut(s)	166, 193, 541, 926
NlaIII	CATG	1 cut(s)	958
NlaIV	GGNNCC	2 cut(s)	309, 477
NmuCI	GTSAC	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	225
OliI	CACNNNNGTG	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	603
PdmI	GAANNNNTTC	2 cut(s)	290, 543
PfeI	GAWTC	6 cut(s)	465, 552, 761, 869, 932, 962
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	2 cut(s)	22, 732
PleI	GAGTC	4 cut(s)	320, 744, 898, 907
PpsI	GAGTC	4 cut(s)	320, 744, 898, 907
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	309, 477
PspPI	GGNCC	2 cut(s)	395, 524
PstI	CTGCAG	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	541, 926
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	234, 348, 557, 923
SatI	GCNGC	2 cut(s)	21, 731
Sau3AI	GATC	4 cut(s)	166, 193, 541, 926
Sau96I	GGNCC	2 cut(s)	395, 524
SchI	GAGTC	4 cut(s)	320, 745, 899, 908
ScrFI	CCNGG	1 cut(s)	485
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	731
Sfr303I	CCGCGG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	225
SgrBI	CCGCGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	556, 854
SmoI	CTYRAG	2 cut(s)	556, 854
Sse9I	AATT	3 cut(s)	42, 349, 533
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	3 cut(s)	18, 20, 748
SspI	AATATT	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	3 cut(s)	333, 841, 944
TaqI	TCGA	3 cut(s)	225, 364, 902
TasI	AATT	3 cut(s)	42, 349, 533
TatI	WGTACW	1 cut(s)	775
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	6 cut(s)	465, 552, 761, 869, 932, 962
Tru1I	TTAA	4 cut(s)	234, 348, 557, 923
Tru9I	TTAA	4 cut(s)	234, 348, 557, 923
TscAI	CASTG	4 cut(s)	164, 534, 669, 844
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	730
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	441, 612
TspRI	CASTG	4 cut(s)	164, 534, 669, 844
Van91I	CCANNNNNTGG	1 cut(s)	757
Vha464I	CTTAAG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	290, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.