pycom16g20150

Galacturonokinase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
17826566 .. 17833893
7328 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1290 bp
ATGGCTGGATCGTCTTGGCCTTCTGAAGCTCAGCTAAATGGAATTAGACAGATAGTTTCAGAAATGGCTGGGACAGGTAGTGAAGAAGTTCGTGTCGTAGTTTCTCCTTATCGAATTTGTCCATTGGGAGCTCATATTGATCATCAGGGCGGGACTGTATCAGCTATGACAATTAACAAGGGAATACTTTTAGGTTTTGTTCCTTCTGGTGACACCCAGGTTATACTGCGTTCAGGACAGTTTAAGGGTGAATGTCGGTTCAGAGTTGATGAAGTTCAGTGCCCTTGGAAGTATGCAGCTGATGCTTCCAAAATAGATGAAGAAAGTGATTGGGGAAGTTATGCGAGAGGAGCCTTATATGCATTACAGAGTAGGCAGAACTCCCTTGCCCAGGGTATCATTGGATATATAATTGGTCCTGAAGGTATGGACAGTTCAGGCCTTAGCTCTTCTGCTGCTGTCGGTGTAGCTTACCTATTGGCTTTGGAAACTGCAAATAATCTAACAGTGTCCCCTGAAGAAAATATTGAGTATGATCGGTTGATTGAAAATGAATTTTGGGGCCTGCGAAATGGTATATTGGATCAATCAGCCATATTGCTTTCGAGCTATGGTTGTCTATTGTGCATGAACTGCAAGACTAAAGAACATAATCTTATACACCCACCAAAACTGGGAGTGAACCACGAGACTGAGTGGCAGGAAGCATACAAAATATTATTGGCATTTTCAGGCTTGAAGCATAATTTGACTGTCCATCCTGGATATAATCATCGAGTTGTAGAGTGTCGAGAAGCTGCAACAGTTCTTTTGAATGCATCCGGAGGTGGTGCAGCAGAGCCGCTCCTATCCAATGTTGACCCAGAAGTTTATCAGACTCACAAGCACATATTAGAACCTAATCTATCCAAGAGAGCGGAGCATTATTTCTCAGAGAATATGCGGGTTAGCAAAGGACTCGAAGCTTGGGCTTCGGGCAGGTTCAAAGATTTTGGAATGCTCATTTCAGAATCTGGCCTAAGTTCTATTCAGAACTATGAATGCGGTTCTGAACCGCTGATACAACTGCGCGAGATCCTTCTAAGGGCTCCTGGTGTCTATGGAGCACGGTTCAGTGGTGCTGGATTTAGAGGTTGCTGCGTTGCATTAGTGGATACTGGTCATGCCGATGAAGCTGCATCATTTGTCAGGGAAGAGTATGACAAGGTCCAACCTGAGTTGGCAAGTCAGTTAAACCATGATACAGCGGTTATGATATGCGAGGCTGGTGATTGTGCCCGTGTTATTTGA

Protein Analysis

430

Amino Acids

46.7

Weight (kDa)

5.24

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 144 - 201 6.5e-09 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 324 - 401 8.6e-10 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 969
AccBSI CCGCTC 2 cut(s) 844, 917
AccII CGCG 1 cut(s) 1071
AccIII TCCGGA 1 cut(s) 821
AciI CCGC 7 cut(s) 150, 842, 917, 943, 1044, 1055, 1247
AclWI GGATC 3 cut(s) 16, 591, 1069
AcsI RAATTY 2 cut(s) 114, 554
AcuI CTGAAG 3 cut(s) 45, 441, 537
AfiI CCNNNNNNNGG 3 cut(s) 391, 674, 1084
AgsI TTSAA 4 cut(s) 548, 739, 814, 985
AjnI CCWGG 4 cut(s) 216, 390, 760, 1090
Alw21I GWGCWC 2 cut(s) 133, 1108
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 3 cut(s) 16, 591, 1069
AlwNI CAGNNNCTG 1 cut(s) 1013
Aor13HI TCCGGA 1 cut(s) 821
AoxI GGCC 4 cut(s) 17, 439, 562, 1015
ApeKI GCWGC 6 cut(s) 296, 455, 797, 833, 1137, 1175
ApoI RAATTY 2 cut(s) 114, 554
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 3 cut(s) 416, 562, 1207
AsuHPI GGTGA 3 cut(s) 221, 260, 1280
AvaII GGWCC 2 cut(s) 416, 1207
BaeGI GKGCMC 2 cut(s) 284, 1279
BaeI ACNNNNGTAYC 2 cut(s) 1233, 1266
BanII GRGCYC 2 cut(s) 133, 1090
BauI CACGAG 1 cut(s) 686
Bbv12I GWGCWC 2 cut(s) 133, 1108
BbvI GCAGC 6 cut(s) 308, 442, 784, 845, 1124, 1162
BccI CCATC 1 cut(s) 765
BcgI CGANNNNNNTGC 4 cut(s) 940, 974, 1157, 1191
BciT130I CCWGG 4 cut(s) 218, 392, 762, 1092
BciVI GTATCC 1 cut(s) 1147
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 683
BfuAI ACCTGC 1 cut(s) 969
BfuI GTATCC 1 cut(s) 1147
BisI GCNGC 7 cut(s) 297, 456, 798, 834, 842, 1138, 1176
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 7 cut(s) 298, 457, 799, 835, 843, 1139, 1177
Bme1390I CCNGG 4 cut(s) 218, 392, 762, 1092
Bme18I GGWCC 2 cut(s) 416, 1207
BmgT120I GGNCC 3 cut(s) 416, 562, 1207
BmiI GGNNCC 3 cut(s) 352, 563, 1089
BmrFI CCNGG 4 cut(s) 218, 392, 762, 1092
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 3 cut(s) 292, 827, 1187
BmuI ACTGGG 1 cut(s) 683
Bpu10I CCTNAGC 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 216, 284, 390, 391
BsaWI WCCGGW 1 cut(s) 821
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 674, 1084
Bse1I ACTGG 2 cut(s) 678, 1162
BseAI TCCGGA 1 cut(s) 821
BseBI CCWGG 4 cut(s) 218, 392, 762, 1092
BseDI CCNNGG 4 cut(s) 216, 284, 390, 391
BseGI GGATG 2 cut(s) 757, 818
BseLI CCNNNNNNNGG 3 cut(s) 391, 674, 1084
BseMII CTCAG 4 cut(s) 44, 684, 945, 1206
BseNI ACTGG 2 cut(s) 678, 1162
BseRI GAGGAG 1 cut(s) 363
BseSI GKGCMC 2 cut(s) 284, 1279
BseXI GCAGC 6 cut(s) 308, 442, 784, 845, 1124, 1162
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 1071
BshFI GGCC 4 cut(s) 19, 441, 564, 1017
BsiHKAI GWGCWC 2 cut(s) 133, 1108
BsiSI CCGG 1 cut(s) 822
BslFI GGGAC 3 cut(s) 85, 166, 496
BslI CCNNNNNNNGG 3 cut(s) 391, 674, 1084
BsmAI GTCTC 1 cut(s) 683
BsmFI GGGAC 3 cut(s) 85, 166, 496
BsmI GAATGC 3 cut(s) 820, 1002, 1046
BsnI GGCC 4 cut(s) 19, 441, 564, 1017
Bsp1286I GDGCHC 5 cut(s) 133, 284, 1090, 1108, 1279
Bsp13I TCCGGA 1 cut(s) 821
Bsp143I GATC 5 cut(s) 8, 139, 535, 583, 1074
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 7 cut(s) 150, 842, 917, 943, 1044, 1055, 1247
BspANI GGCC 4 cut(s) 19, 441, 564, 1017
BspCNI CTCAG 4 cut(s) 43, 685, 944, 1207
BspEI TCCGGA 1 cut(s) 821
BspFNI CGCG 1 cut(s) 1071
BspLI GGNNCC 3 cut(s) 352, 563, 1089
BspMI ACCTGC 1 cut(s) 969
BspPI GGATC 3 cut(s) 16, 591, 1069
BspQI GCTCTTC 1 cut(s) 454
BsrBI CCGCTC 2 cut(s) 844, 917
BsrI ACTGG 2 cut(s) 678, 1162
BssECI CCNNGG 4 cut(s) 216, 284, 390, 391
BssMI GATC 5 cut(s) 8, 139, 535, 583, 1074
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 4 cut(s) 218, 392, 762, 1092
Bst4CI ACNGT 7 cut(s) 157, 240, 434, 508, 754, 805, 1110
Bst6I CTCTTC 2 cut(s) 454, 1188
BstAPI GCANNNNNTGC 2 cut(s) 302, 633
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 7 cut(s) 30, 443, 693, 931, 1019, 1082, 1215
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 2 cut(s) 757, 818
BstFNI CGCG 1 cut(s) 1071
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 5 cut(s) 11, 142, 538, 586, 1077
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 5 cut(s) 8, 139, 535, 583, 1074
BstMWI GCNNNNNNNGC 5 cut(s) 302, 350, 359, 633, 1172
BstNI CCWGG 4 cut(s) 218, 392, 762, 1092
BstSCI CCNGG 4 cut(s) 216, 390, 760, 1090
BstSLI GKGCMC 2 cut(s) 284, 1279
BstUI CGCG 1 cut(s) 1071
BstV1I GCAGC 6 cut(s) 308, 442, 784, 845, 1124, 1162
BstX2I RGATCY 1 cut(s) 1074
BstYI RGATCY 1 cut(s) 1074
BsuI GTATCC 1 cut(s) 1147
BsuRI GGCC 4 cut(s) 19, 441, 564, 1017
BtsCI GGATG 2 cut(s) 757, 818
BtsIMutI CAGTG 3 cut(s) 284, 513, 1120
BveI ACCTGC 1 cut(s) 969
Cac8I GCNNGC 1 cut(s) 566
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 1 cut(s) 1071
Cfr13I GGNCC 3 cut(s) 416, 562, 1207
CviAII CATG 3 cut(s) 628, 1163, 1238
DdeI CTNAG 7 cut(s) 30, 443, 693, 931, 1019, 1082, 1215
DpnI GATC 5 cut(s) 10, 141, 537, 585, 1076
DpnII GATC 5 cut(s) 8, 139, 535, 583, 1074
Eam1104I CTCTTC 2 cut(s) 454, 1188
EarI CTCTTC 2 cut(s) 454, 1188
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 133, 1090
Eco47I GGWCC 2 cut(s) 416, 1207
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 3 cut(s) 45, 441, 537
EcoICRI GAGCTC 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 4 cut(s) 216, 390, 760, 1090
EcoT14I CCWWGG 1 cut(s) 284
EcoT22I ATGCAT 2 cut(s) 364, 820
EcoT38I GRGCYC 2 cut(s) 133, 1090
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 631, 1166, 1241
FaqI GGGAC 3 cut(s) 85, 166, 496
FatI CATG 3 cut(s) 627, 1162, 1237
FauI CCCGC 2 cut(s) 143, 936
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 7 cut(s) 297, 456, 798, 834, 842, 1138, 1176
FokI GGATG 2 cut(s) 744, 805
FriOI GRGCYC 2 cut(s) 133, 1090
Fsp4HI GCNGC 7 cut(s) 297, 456, 798, 834, 842, 1138, 1176
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 7 cut(s) 297, 456, 798, 834, 842, 1138, 1176
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 4 cut(s) 19, 441, 564, 1017
HapII CCGG 1 cut(s) 822
HhaI GCGC 1 cut(s) 1071
Hin1II CATG 3 cut(s) 631, 1166, 1241
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 3 cut(s) 877, 957, 1010
HpaII CCGG 1 cut(s) 822
HphI GGTGA 3 cut(s) 221, 260, 1280
Hpy166II GTNNAC 2 cut(s) 682, 859
Hpy188I TCNGA 8 cut(s) 25, 61, 263, 876, 934, 1009, 1032, 1051
Hpy188III TCNNGA 4 cut(s) 234, 419, 791, 822
Hpy8I GTNNAC 2 cut(s) 682, 859
HpyAV CCTTC 4 cut(s) 30, 213, 416, 1088
HpyCH4III ACNGT 7 cut(s) 157, 240, 434, 508, 754, 805, 1110
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 350, 359, 633, 1172
HpyF3I CTNAG 7 cut(s) 30, 443, 693, 931, 1019, 1082, 1215
Hsp92II CATG 3 cut(s) 631, 1166, 1241
HspAI GCGC 1 cut(s) 1069
Kpn2I TCCGGA 1 cut(s) 821
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 5 cut(s) 8, 139, 535, 583, 1074
LguI GCTCTTC 1 cut(s) 454
LmnI GCTCC 6 cut(s) 128, 350, 849, 919, 1093, 1103
Lsp1109I GCAGC 6 cut(s) 308, 442, 784, 845, 1124, 1162
LweI GCATC 3 cut(s) 292, 827, 1187
MaeIII GTNAC 1 cut(s) 209
MalI GATC 5 cut(s) 10, 141, 537, 585, 1076
MbiI CCGCTC 2 cut(s) 844, 917
MboI GATC 5 cut(s) 8, 139, 535, 583, 1074
MboII GAAGA 5 cut(s) 95, 332, 441, 530, 1205
MflI RGATCY 1 cut(s) 1074
MhlI GDGCHC 5 cut(s) 133, 284, 1090, 1108, 1279
MluCI AATT 6 cut(s) 42, 114, 171, 411, 554, 745
MlyI GAGTC 2 cut(s) 871, 951
MmeI TCCRAC 1 cut(s) 1234
MnlI CCTC 4 cut(s) 341, 818, 1124, 1255
Mph1103I ATGCAT 2 cut(s) 364, 820
MroI TCCGGA 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 3 cut(s) 174, 243, 1232
MslI CAYNNNNRTG 1 cut(s) 1167
MspA1I CMGCKG 3 cut(s) 299, 1057, 1247
MspI CCGG 1 cut(s) 822
MspR9I CCNGG 4 cut(s) 218, 392, 762, 1092
Mva1269I GAATGC 3 cut(s) 820, 1002, 1046
MvaI CCWGG 4 cut(s) 218, 392, 762, 1092
MvnI CGCG 1 cut(s) 1071
MwoI GCNNNNNNNGC 5 cut(s) 302, 350, 359, 633, 1172
NdeII GATC 5 cut(s) 8, 139, 535, 583, 1074
NlaIII CATG 3 cut(s) 631, 1166, 1241
NlaIV GGNNCC 3 cut(s) 352, 563, 1089
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 2 cut(s) 364, 820
PasI CCCWGGG 1 cut(s) 391
PceI AGGCCT 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 454
PctI GAATGC 3 cut(s) 820, 1002, 1046
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 1010
PflFI GACNNNGTC 1 cut(s) 1205
PfoI TCCNGGA 1 cut(s) 760
PkrI GCNGC 7 cut(s) 298, 457, 799, 835, 843, 1139, 1177
PleI GAGTC 2 cut(s) 871, 951
PpsI GAGTC 2 cut(s) 871, 951
Psp124BI GAGCTC 1 cut(s) 133
Psp6I CCWGG 4 cut(s) 216, 390, 760, 1090
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 4 cut(s) 216, 390, 760, 1090
PspN4I GGNNCC 3 cut(s) 352, 563, 1089
PspPI GGNCC 3 cut(s) 416, 562, 1207
PsrI GAACNNNNNNTAC 4 cut(s) 418, 450, 1044, 1076
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 1074
PsyI GACNNNGTC 1 cut(s) 1205
PvuII CAGCTG 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 1167
SacI GAGCTC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 174, 243, 1232
SatI GCNGC 7 cut(s) 297, 456, 798, 834, 842, 1138, 1176
Sau3AI GATC 5 cut(s) 8, 139, 535, 583, 1074
Sau96I GGNCC 3 cut(s) 416, 562, 1207
SchI GAGTC 2 cut(s) 871, 951
ScrFI CCNGG 4 cut(s) 218, 392, 762, 1092
SduI GDGCHC 5 cut(s) 133, 284, 1090, 1108, 1279
SfaNI GCATC 3 cut(s) 292, 827, 1187
SinI GGWCC 2 cut(s) 416, 1207
SmiMI CAYNNNNRTG 1 cut(s) 1167
Sse9I AATT 6 cut(s) 42, 114, 171, 411, 554, 745
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 7 cut(s) 150, 842, 917, 943, 1044, 1055, 1247
SspI AATATT 2 cut(s) 526, 717
SstI GAGCTC 1 cut(s) 133
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 4 cut(s) 216, 390, 760, 1090
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 7 cut(s) 157, 240, 434, 508, 754, 805, 1110
TaqI TCGA 5 cut(s) 112, 605, 775, 790, 960
TasI AATT 6 cut(s) 42, 114, 171, 411, 554, 745
TauI GCSGC 1 cut(s) 844
TfiI GAWTC 1 cut(s) 1010
Tru1I TTAA 3 cut(s) 174, 243, 1232
Tru9I TTAA 3 cut(s) 174, 243, 1232
TscAI CASTG 3 cut(s) 284, 513, 1120
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 6 cut(s) 296, 455, 797, 833, 1137, 1175
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 6 cut(s) 285, 333, 567, 644, 1053, 1185
TspRI CASTG 3 cut(s) 284, 513, 1120
Tth111I GACNNNGTC 1 cut(s) 1205
VpaK11BI GGWCC 2 cut(s) 416, 1207
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 2 cut(s) 114, 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 87
Zsp2I ATGCAT 2 cut(s) 364, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.