Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006550

Physical Location & Seq

Genomic Coordinates Reverse (-)

18974916 .. 18977679

Gene Structure 2764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTCGCCAGCTCCAATTGAGCAGGCATTGCCCGAATCGTCGTCTTCGAGCTCCCCTGATGTACCTGAGATATCTGAGGCTGATAATCCTCGATTCAAGGAGCTTAGAGGCGTCCAATGGCGTATTAATCTTGGGATTTTGCCCTCTTCTTCTTCTTCGTCTTCTTCGTCCTCCATTGATGATCTTCGTCGGGTCACAGCTGATTGTAGAAGAGGATACGCTGGATTGAGAAGGCGCCTTCTGGTTGATCCACATCCCCAAAAGGATGGGAGTAATTCCCCTGATCTTGCCTTAGACAATCCGCTGTCACAAAACCCAGATAGCACATGGGGTCGCTTTTTCCGGAGTGCCGAGCTGGAGAAAATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGAAGCTATTTTCAAACACCAGGATGCCAAGGCATGTTGAGAAGAATCTTGTTATTGTGGTGTCTTAGATATCCAGAGTGTGGTTATAGACAAGGAATGCATGAACTCTTGGCTCCTTTATTGTATGTTCTTCATTTTGATGTGGAGCGGCTATCTCAAGTGCGAAAGCTACATGAAGATCACTTCACCGATAAATTTGATGGTCTATCATTTCATGAAAGTGATCTTACATACAACTTTGAGTTCAAAAAGTTTCCTGACTCTACGGAAGATGAGAATGGCTTAGATGGAACTGCATTGAATGTTAAGAGTCTTGATGAGCTTGATCCCGAGATACAGACCATTGTGATGCTTAGTGATGCTTATGGTGCTGAAGGTGAACTGGGTATTGTTTTCTCTGAGAGATTTATGGAACATGATGCGTACTATATGTTTGATGCTCTAATGAGGGGGGCCCATGGATCAGTTTCTATGGCAGAATTCTTCTATCCCTCCCCTGCTGTTGGTTCTCATACTAATTTACCTACTGTCATTGAAGCATCTGCTGCGTTGTATCATTTGCTGTCCCTTGTTGATTCATCTCTACACAGCCACCTTGTTGAGCTTGGTGTTGAACCCCAGTATTTTGCACTCCGCTGGTTAAGGGTTTTATTTGGACGTGAATTTTCACTTGCAAATCTATTGATAATTTGGGATGAAATATTTGCATCTGATAATGGTAAATTATACAAAGGTTCTGAAGATGATGCAGCATCCAGCTTTGCCATCCTTACTTCACCTCGAGGAGCATATATATCAGCCATGGCAGTTTCAATGTTACTTTATTTGATCGATCTTCCCTACTTGCCACTGAGAATGCTACTGCATGTCTTCAGAGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

429

Amino Acids

48.25

Weight (kDa)

4.92

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	120 - 178	9.2e-13	Rab-GTPase-TBC domain
RabGAP-TBC	PF00566	272 - 372	2.5e-11	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29950 AT4G29950 AT4G29950 AT5G57210 AT5G57210
fragaria_vesca	FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350 FvH4_4g07350
malus_domestica	MD13G1242400.v1.1 MD16G1249600.v1.1
prunus_persica	Prupe.1G076400_v2.0.a1 Prupe.1G076400_v2.0.a1
pyrus_communis	pycom16g20900
rosa_chinensis	RchiOBHm_Chr4g0399721
rosa_laevigata	RLG00000009244
rosa_multiflora	Rmu_ssc0000118.1_g000009
rosa_roxburghii	Rroxscaffold_5G00344660
rosa_rugosa	Rorug04G0018500
rosa_samantha	Rh4AG096100 Rh4BG093600 Rh4CG104900 Rh4DG088900
rosa_wichuraiana	Rw4G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1182
AccB1I	GGYRCC	1 cut(s)	234
AccB7I	CCANNNNNTGG	2 cut(s)	401, 482
AccBSI	CCGCTC	1 cut(s)	550
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	3 cut(s)	302, 550, 1036
AclWI	GGATC	3 cut(s)	242, 722, 871
AcsI	RAATTY	3 cut(s)	596, 881, 1064
AcuI	CTGAAG	3 cut(s)	795, 1161, 1258
AcyI	GRCGYC	2 cut(s)	111, 235
AfaI	GTAC	2 cut(s)	63, 827
AfiI	CCNNNNNNNGG	3 cut(s)	401, 482, 905
AgsI	TTSAA	7 cut(s)	97, 416, 649, 703, 938, 1016, 1215
AjiI	CACGTC	1 cut(s)	1061
AjnI	CCWGG	1 cut(s)	421
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	3 cut(s)	242, 722, 871
Ama87I	CYCGRG	2 cut(s)	731, 1182
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	1 cut(s)	855
ApaI	GGGCCC	1 cut(s)	859
ApeKI	GCWGC	2 cut(s)	947, 1151
ApoI	RAATTY	3 cut(s)	596, 881, 1064
AseI	ATTAAT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	855, 856
AsuHPI	GGTGA	3 cut(s)	580, 791, 1170
AvaI	CYCGRG	2 cut(s)	731, 1182
BaeGI	GKGCMC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	2 cut(s)	53, 859
BbsI	GAAGAC	3 cut(s)	36, 153, 1264
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	934, 1163
BccI	CCATC	4 cut(s)	260, 596, 683, 1175
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	551, 948, 1152
BlsI	GCNGC	3 cut(s)	552, 949, 1153
Bme1390I	CCNGG	1 cut(s)	423
BmeT110I	CYCGRG	2 cut(s)	731, 1182
BmgBI	CACGTC	1 cut(s)	1061
BmgT120I	GGNCC	2 cut(s)	855, 856
BmiI	GGNNCC	4 cut(s)	236, 516, 856, 857
BmrFI	CCNGG	1 cut(s)	423
BmrI	ACTGGG	2 cut(s)	794, 1015
BmsI	GCATC	9 cut(s)	416, 741, 751, 811, 829, 950, 1118, 1138, 1163
BmuI	ACTGGG	2 cut(s)	794, 1015
BpiI	GAAGAC	3 cut(s)	36, 153, 1264
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	543
Bsa29I	ATCGAT	1 cut(s)	1233
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	111, 235
BsaJI	CCNNGG	3 cut(s)	430, 859, 1203
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	3 cut(s)	401, 482, 905
Bse1I	ACTGG	2 cut(s)	789, 1021
Bse3DI	GCAATG	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	1233
BseDI	CCNNGG	3 cut(s)	430, 859, 1203
BseGI	GGATG	6 cut(s)	253, 271, 431, 1102, 1154, 1167
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	401, 482, 905
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	4 cut(s)	57, 66, 792, 1244
BseNI	ACTGG	2 cut(s)	789, 1021
BseRI	GAGGAG	1 cut(s)	1200
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	2 cut(s)	934, 1163
BshFI	GGCC	1 cut(s)	857
BshNI	GGYRCC	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	1233
BsiHKAI	GWGCWC	1 cut(s)	53
BsiHKCI	CYCGRG	2 cut(s)	731, 1182
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	952
BslI	CCNNNNNNNGG	3 cut(s)	401, 482, 905
BsmFI	GGGAC	1 cut(s)	952
BsmI	GAATGC	2 cut(s)	504, 1263
BsnI	GGCC	1 cut(s)	857
BsoBI	CYCGRG	2 cut(s)	731, 1182
Bsp120I	GGGCCC	1 cut(s)	855
Bsp1286I	GDGCHC	2 cut(s)	53, 859
Bsp13I	TCCGGA	1 cut(s)	342
Bsp19I	CCATGG	2 cut(s)	859, 1203
BspACI	CCGC	3 cut(s)	302, 550, 1036
BspANI	GGCC	1 cut(s)	857
BspCNI	CTCAG	4 cut(s)	58, 67, 793, 1245
BspDI	ATCGAT	1 cut(s)	1233
BspEI	TCCGGA	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	4 cut(s)	236, 516, 856, 857
BspPI	GGATC	3 cut(s)	242, 722, 871
BspT107I	GGYRCC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	789, 1021
BssECI	CCNNGG	3 cut(s)	430, 859, 1203
BssNI	GRCGYC	2 cut(s)	111, 235
BssT1I	CCWWGG	3 cut(s)	430, 859, 1203
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	931
Bst6I	CTCTTC	2 cut(s)	151, 205
BstACI	GRCGYC	2 cut(s)	111, 235
BstAPI	GCANNNNNTGC	2 cut(s)	28, 947
BstC8I	GCNNGC	2 cut(s)	9, 24
BstDEI	CTNAG	9 cut(s)	66, 75, 104, 292, 467, 685, 755, 801, 1253
BstDSI	CCRYGG	2 cut(s)	859, 1203
BstF5I	GGATG	6 cut(s)	253, 271, 431, 1102, 1154, 1167
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 770, 947
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	439, 1271
BstSCI	CCNGG	1 cut(s)	421
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	934, 1163
BstV2I	GAAGAC	3 cut(s)	36, 153, 1264
BstXI	CCANNNNNNTGG	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	1233
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	857
BsuTUI	ATCGAT	1 cut(s)	1233
BtgI	CCRYGG	2 cut(s)	859, 1203
BtrI	CACGTC	1 cut(s)	1061
BtsCI	GGATG	6 cut(s)	253, 271, 431, 1102, 1154, 1167
BtsIMutI	CAGTG	1 cut(s)	1250
Cac8I	GCNNGC	2 cut(s)	9, 24
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	855, 856
ClaI	ATCGAT	1 cut(s)	1233
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	62, 826
CviQI	GTAC	2 cut(s)	62, 826
DdeI	CTNAG	9 cut(s)	66, 75, 104, 292, 467, 685, 755, 801, 1253
DinI	GGCGCC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	151, 205
EarI	CTCTTC	2 cut(s)	151, 205
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	3 cut(s)	430, 859, 1203
Eco24I	GRGCYC	2 cut(s)	53, 859
Eco32I	GATATC	2 cut(s)	72, 473
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	3 cut(s)	795, 1161, 1258
Eco88I	CYCGRG	2 cut(s)	731, 1182
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	855
EcoRI	GAATTC	1 cut(s)	881
EcoRII	CCWGG	1 cut(s)	421
EcoRV	GATATC	2 cut(s)	72, 473
EcoT14I	CCWWGG	3 cut(s)	430, 859, 1203
EcoT22I	ATGCAT	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	53, 859
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
ErhI	CCWWGG	3 cut(s)	430, 859, 1203
FaqI	GGGAC	1 cut(s)	952
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	551, 948, 1152
FokI	GGATG	6 cut(s)	240, 278, 438, 1109, 1141, 1154
FriOI	GRGCYC	2 cut(s)	53, 859
Fsp4HI	GCNGC	3 cut(s)	551, 948, 1152
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	551, 948, 1152
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	857
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	2 cut(s)	111, 235
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	6 cut(s)	35, 93, 447, 662, 712, 977
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	3 cut(s)	580, 791, 1170
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	5 cut(s)	76, 802, 1114, 1141, 1277
Hpy188III	TCNNGA	7 cut(s)	343, 374, 476, 617, 659, 716, 731
Hpy8I	GTNNAC	1 cut(s)	782
Hpy99I	CGWCG	2 cut(s)	43, 192
HpyAV	CCTTC	3 cut(s)	225, 248, 770
HpyCH4III	ACNGT	1 cut(s)	931
HpyCH4IV	ACGT	2 cut(s)	385, 1060
HpyCH4V	TGCA	7 cut(s)	502, 698, 1031, 1076, 1109, 1151, 1267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 770, 947
HpyF3I	CTNAG	9 cut(s)	66, 75, 104, 292, 467, 685, 755, 801, 1253
HpySE526I	ACGT	2 cut(s)	385, 1060
Hsp92I	GRCGYC	2 cut(s)	111, 235
HspAI	GCGC	1 cut(s)	235
KasI	GGCGCC	1 cut(s)	234
Kpn2I	TCCGGA	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	370
LmnI	GCTCC	6 cut(s)	16, 56, 100, 520, 547, 1187
Lsp1109I	GCAGC	2 cut(s)	934, 1163
LweI	GCATC	9 cut(s)	416, 741, 751, 811, 829, 950, 1118, 1138, 1163
MaeII	ACGT	2 cut(s)	385, 1060
MaeIII	GTNAC	3 cut(s)	193, 306, 1218
MbiI	CCGCTC	1 cut(s)	550
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	53, 859
MluCI	AATT	8 cut(s)	15, 274, 596, 881, 919, 1064, 1089, 1124
Mly113I	GGCGCC	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	656, 721
Mph1103I	ATGCAT	1 cut(s)	504
MroI	TCCGGA	1 cut(s)	342
MseI	TTAA	4 cut(s)	126, 708, 1043, 1285
MslI	CAYNNNNRTG	4 cut(s)	424, 540, 621, 749
MspA1I	CMGCKG	3 cut(s)	200, 304, 1038
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	2 cut(s)	504, 1263
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	28, 770, 947
NarI	GGCGCC	1 cut(s)	235
NcoI	CCATGG	2 cut(s)	859, 1203
NlaIV	GGNNCC	4 cut(s)	236, 516, 856, 857
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	193, 306
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	439, 1271
PaeR7I	CTCGAG	1 cut(s)	1182
PagI	TCATGA	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 164
PctI	GAATGC	2 cut(s)	504, 1263
PfeI	GAWTC	4 cut(s)	35, 93, 447, 977
PflMI	CCANNNNNTGG	2 cut(s)	401, 482
PkrI	GCNGC	3 cut(s)	552, 949, 1153
PleI	GAGTC	2 cut(s)	656, 720
PluTI	GGCGCC	1 cut(s)	238
PpsI	GAGTC	2 cut(s)	656, 720
PshBI	ATTAAT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	4 cut(s)	236, 516, 856, 857
PspOMI	GGGCCC	1 cut(s)	855
PspPI	GGNCC	2 cut(s)	855, 856
PspXI	VCTCGAGB	1 cut(s)	1182
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	63, 827
RsaNI	GTAC	2 cut(s)	62, 826
RseI	CAYNNNNRTG	4 cut(s)	424, 540, 621, 749
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	126, 708, 1043, 1285
SatI	GCNGC	3 cut(s)	551, 948, 1152
Sau96I	GGNCC	2 cut(s)	855, 856
SchI	GAGTC	2 cut(s)	656, 721
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	53, 859
SfaNI	GCATC	9 cut(s)	416, 741, 751, 811, 829, 950, 1118, 1138, 1163
SfoI	GGCGCC	1 cut(s)	236
Sfr274I	CTCGAG	1 cut(s)	1182
SlaI	CTCGAG	1 cut(s)	1182
SmiMI	CAYNNNNRTG	4 cut(s)	424, 540, 621, 749
SmlI	CTYRAG	2 cut(s)	558, 1182
SmoI	CTYRAG	2 cut(s)	558, 1182
Sse9I	AATT	8 cut(s)	15, 274, 596, 881, 919, 1064, 1089, 1124
SsiI	CCGC	3 cut(s)	302, 550, 1036
SspDI	GGCGCC	1 cut(s)	234
SspI	AATATT	1 cut(s)	1104
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	3 cut(s)	430, 859, 1203
TaaI	ACNGT	1 cut(s)	931
TaiI	ACGT	2 cut(s)	388, 1063
TaqI	TCGA	4 cut(s)	47, 91, 1183, 1233
TasI	AATT	8 cut(s)	15, 274, 596, 881, 919, 1064, 1089, 1124
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	4 cut(s)	35, 93, 447, 977
Tru1I	TTAA	4 cut(s)	126, 708, 1043, 1285
Tru9I	TTAA	4 cut(s)	126, 708, 1043, 1285
TscAI	CASTG	1 cut(s)	1257
TseFI	GTSAC	2 cut(s)	193, 306
TseI	GCWGC	2 cut(s)	947, 1151
Tsp45I	GTSAC	2 cut(s)	193, 306
TspDTI	ATGAA	7 cut(s)	519, 524, 591, 605, 633, 969, 1113
TspGWI	ACGGA	1 cut(s)	683
TspRI	CASTG	1 cut(s)	1257
Van91I	CCANNNNNTGG	2 cut(s)	401, 482
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	3 cut(s)	596, 881, 1064
XceI	RCATGY	2 cut(s)	439, 1271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
XhoI	CTCGAG	1 cut(s)	1182
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.