Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Forward (+)

25464975 .. 25468561

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATTATGGTAGAGAGAGCAGTGTAGTCCATCTAATCACTGGGAATAGTAGTGGTGGTGGTGGTGATATTTGGTCTAGTGACCAGGCAGTTTGGGCTACTGAGGATGAGTACCGTGTTTGGAATAATGGTGACGCGTTGGCGGACACCATGTCCAACTCAAATTATGATCAAAGGCAGTCGCAAAGTCGCTCTGGAAGCGAACCCCCAAATAAGAAATCAAGGAACTCCCAAGATGCAACTTCATCTAACCGGTCAAAAGCCATTGGGAAAATGTTCTTCAAAACCAAACTTTGTTGCAAATTCCGTGCTGGGACGTGCCCCTATGTTACCAATTGTAACTTTGCTCATAGCATTGAAGAGCTTCGGAGGCCGCCGCCAAATTGGCAAGAAATTGTGGCTGCCCACGAGGAAGAAAAGGCTGTATCTTCAGAGCCAAGGGAAGAGTGCCAAATTCCAATCGTCTCTACAGGTTATGGTGTGGAGACTCCAAGATCCTATAAAGGGAGGCATTGCAAAAAGTTTTATACTGAGGAAGGGTGTCCTTATGGGGATAATTGCACTTTTCTTCATGATGAGCAGTCCAAGAATAGAGAGAGTGTGGCAATAAGTTTAGGTCCTGGAGGGTATGGTGGTGCTGCTGCTGCTGCGAATGGAGCAAATAACAAGCCATCAAACTGGAAAACAAGGATTTGCAATAAGTGGGAATTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGTGTAGCAGAATTACACCGGTATGGTGGTGGACTTGTGGAGGGAGAAACTAGAGATTCTTCTTCAGTCGCTCCTGACAATAAGCAGGGAGTAGTGCCTTCAAAAACTCCAGGAGATGCTGTGGTAGTATCGGTCCCTCTAGTCTCATATTCTGATGTTTATCACCTTGGAGTTCCGTCACAAAGATCGATCTATTGTAATTCAGATCGATCAGGGCTGAGAGCCCATCAGAAATGGAAGGGGCCAGACAAAATCAGTAGGATATACGGTGACTGGATTGATGACATCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

349

Amino Acids

38.25

Weight (kDa)

6.79

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	94 - 118	6.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	170 - 192	5.2e-09	CCCH-type zinc finger
zf-CCCH	PF00642	227 - 252	5.3e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	228 - 251	4.5e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	137
AciI	CCGC	3 cut(s)	143, 374, 377
AclWI	GGATC	1 cut(s)	489
AcsI	RAATTY	2 cut(s)	302, 453
AcuI	CTGAAG	2 cut(s)	414, 801
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflIII	ACRYGT	1 cut(s)	135
AgeI	ACCGGT	2 cut(s)	252, 771
AgsI	TTSAA	3 cut(s)	283, 359, 855
AhdI	GACNNNNNGTC	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	3 cut(s)	84, 619, 862
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	469, 479, 901
AlwI	GGATC	1 cut(s)	489
AoxI	GGCC	2 cut(s)	371, 995
ApeKI	GCWGC	5 cut(s)	401, 638, 641, 644, 647
ApoI	RAATTY	2 cut(s)	302, 453
AsiGI	ACCGGT	2 cut(s)	252, 771
Asp700I	GAANNNNTTC	2 cut(s)	275, 363
AspS9I	GGNCC	3 cut(s)	617, 886, 995
AsuHPI	GGTGA	4 cut(s)	77, 143, 908, 1034
AvaII	GGWCC	2 cut(s)	617, 886
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	979
BauI	CACGAG	1 cut(s)	407
BbvI	GCAGC	5 cut(s)	388, 625, 628, 631, 634
BccI	CCATC	3 cut(s)	39, 679, 987
BciT130I	CCWGG	3 cut(s)	86, 621, 864
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	469, 479, 901
BfaI	CTAG	3 cut(s)	78, 804, 893
BfmI	CTRYAG	1 cut(s)	468
BglI	GCCNNNNNGGC	1 cut(s)	385
BisI	GCNGC	7 cut(s)	374, 377, 402, 639, 642, 645, 648
BlsI	GCNGC	7 cut(s)	375, 378, 403, 640, 643, 646, 649
Bme1390I	CCNGG	3 cut(s)	86, 621, 864
Bme18I	GGWCC	2 cut(s)	617, 886
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	3 cut(s)	617, 886, 995
BmiI	GGNNCC	2 cut(s)	888, 996
BmrFI	CCNGG	3 cut(s)	86, 621, 864
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	226, 859
BmuI	ACTGGG	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	642, 846
Bsa29I	ATCGAT	2 cut(s)	941, 961
BsaBI	GATNNNNATC	1 cut(s)	912
BsaJI	CCNNGG	2 cut(s)	437, 919
BsaWI	WCCGGW	2 cut(s)	252, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	858, 888
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse118I	RCCGGY	2 cut(s)	252, 771
Bse1I	ACTGG	3 cut(s)	46, 683, 1031
Bse3DI	GCAATG	1 cut(s)	511
Bse8I	GATNNNNATC	1 cut(s)	912
BseBI	CCWGG	3 cut(s)	86, 621, 864
BseCI	ATCGAT	2 cut(s)	941, 961
BseDI	CCNNGG	2 cut(s)	437, 919
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	93, 522, 962
BseNI	ACTGG	3 cut(s)	46, 683, 1031
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	388, 625, 628, 631, 634
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	373, 997
BshTI	ACCGGT	2 cut(s)	252, 771
BshVI	ATCGAT	2 cut(s)	941, 961
BsiSI	CCGG	2 cut(s)	253, 772
BslFI	GGGAC	2 cut(s)	328, 872
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	469, 479, 901
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	2 cut(s)	328, 872
BsnI	GGCC	2 cut(s)	373, 997
Bsp1286I	GDGCHC	2 cut(s)	323, 979
Bsp143I	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
BspACI	CCGC	3 cut(s)	143, 374, 377
BspANI	GGCC	2 cut(s)	373, 997
BspCNI	CTCAG	3 cut(s)	94, 523, 963
BspDI	ATCGAT	2 cut(s)	941, 961
BspFNI	CGCG	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	888, 996
BspPI	GGATC	1 cut(s)	489
BspQI	GCTCTTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	2 cut(s)	252, 771
BsrI	ACTGG	3 cut(s)	46, 683, 1031
BssAI	RCCGGY	2 cut(s)	252, 771
BssECI	CCNNGG	2 cut(s)	437, 919
BssMI	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	2 cut(s)	437, 919
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	3 cut(s)	86, 621, 864
Bst4CI	ACNGT	2 cut(s)	116, 1022
Bst6I	CTCTTC	2 cut(s)	354, 438
BstDEI	CTNAG	3 cut(s)	102, 531, 971
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	6 cut(s)	172, 497, 941, 945, 961, 965
BstMAI	GTCTC	3 cut(s)	469, 479, 901
BstMBI	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 198, 370, 385, 644, 647, 656
BstNI	CCWGG	3 cut(s)	86, 621, 864
BstSCI	CCNGG	3 cut(s)	84, 619, 862
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	5 cut(s)	388, 625, 628, 631, 634
BstX2I	RGATCY	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	494
Bsu15I	ATCGAT	2 cut(s)	941, 961
BsuRI	GGCC	2 cut(s)	373, 997
BsuTUI	ATCGAT	2 cut(s)	941, 961
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 39
CciI	TCATGA	1 cut(s)	571
Cfr10I	RCCGGY	2 cut(s)	252, 771
Cfr13I	GGNCC	3 cut(s)	617, 886, 995
ClaI	ATCGAT	2 cut(s)	941, 961
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	112
CspAI	ACCGGT	2 cut(s)	252, 771
CviAII	CATG	3 cut(s)	151, 572, 752
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	102, 531, 971
DpnI	GATC	6 cut(s)	171, 496, 940, 944, 960, 964
DpnII	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
DriI	GACNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	354, 438
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	2 cut(s)	354, 438
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	437, 919
Eco24I	GRGCYC	1 cut(s)	979
Eco47I	GGWCC	2 cut(s)	617, 886
Eco57I	CTGAAG	2 cut(s)	414, 801
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	3 cut(s)	84, 619, 862
EcoT14I	CCWWGG	2 cut(s)	437, 919
EcoT38I	GRGCYC	1 cut(s)	979
ErhI	CCWWGG	2 cut(s)	437, 919
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	3 cut(s)	154, 575, 755
FaqI	GGGAC	2 cut(s)	328, 872
FatI	CATG	3 cut(s)	150, 571, 751
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	7 cut(s)	374, 377, 402, 639, 642, 645, 648
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	7 cut(s)	374, 377, 402, 639, 642, 645, 648
FspBI	CTAG	3 cut(s)	78, 804, 893
GluI	GCNGC	7 cut(s)	374, 377, 402, 639, 642, 645, 648
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	2 cut(s)	642, 846
HaeIII	GGCC	2 cut(s)	373, 997
HapII	CCGG	2 cut(s)	253, 772
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	154, 575, 755
HinfI	GANTC	2 cut(s)	487, 809
HpaII	CCGG	2 cut(s)	253, 772
HphI	GGTGA	4 cut(s)	77, 143, 908, 1034
Hpy166II	GTNNAC	1 cut(s)	785
Hpy188I	TCNGA	5 cut(s)	369, 433, 907, 958, 984
Hpy188III	TCNNGA	3 cut(s)	195, 572, 827
Hpy8I	GTNNAC	1 cut(s)	785
HpyAV	CCTTC	3 cut(s)	530, 861, 985
HpyCH4III	ACNGT	2 cut(s)	116, 1022
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	5 cut(s)	239, 300, 516, 561, 696
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 198, 370, 385, 644, 647, 656
HpyF3I	CTNAG	3 cut(s)	102, 531, 971
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	154, 575, 755
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	656, 829
Lsp1109I	GCAGC	5 cut(s)	388, 625, 628, 631, 634
LweI	GCATC	2 cut(s)	226, 859
MaeI	CTAG	3 cut(s)	78, 804, 893
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	6 cut(s)	80, 131, 328, 338, 930, 1022
MalI	GATC	6 cut(s)	171, 496, 940, 944, 960, 964
MboI	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
MboII	GAAGA	8 cut(s)	271, 371, 420, 425, 455, 560, 804, 807
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	2 cut(s)	323, 979
MluI	ACGCGT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	8 cut(s)	97, 363, 403, 501, 526, 617, 787, 900
MroXI	GAANNNNTTC	2 cut(s)	275, 363
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	2 cut(s)	253, 772
MspR9I	CCNGG	3 cut(s)	86, 621, 864
MunI	CAATTG	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	86, 621, 864
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	7 cut(s)	95, 198, 370, 385, 644, 647, 656
NdeII	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
NlaIII	CATG	3 cut(s)	154, 575, 755
NlaIV	GGNNCC	2 cut(s)	888, 996
NmuCI	GTSAC	4 cut(s)	80, 131, 930, 1022
PagI	TCATGA	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	354
PdmI	GAANNNNTTC	2 cut(s)	275, 363
PfeI	GAWTC	1 cut(s)	809
PfoI	TCCNGGA	2 cut(s)	619, 862
PinAI	ACCGGT	2 cut(s)	252, 771
PkrI	GCNGC	7 cut(s)	375, 378, 403, 640, 643, 646, 649
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	3 cut(s)	84, 619, 862
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	3 cut(s)	84, 619, 862
PspN4I	GGNNCC	2 cut(s)	888, 996
PspPI	GGNCC	3 cut(s)	617, 886, 995
PspPPI	RGGWCCY	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	354
SatI	GCNGC	7 cut(s)	374, 377, 402, 639, 642, 645, 648
Sau3AI	GATC	6 cut(s)	169, 494, 938, 942, 958, 962
Sau96I	GGNCC	3 cut(s)	617, 886, 995
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	86, 621, 864
SduI	GDGCHC	2 cut(s)	323, 979
SetI	ASST	5 cut(s)	320, 366, 475, 619, 921
SfaNI	GCATC	2 cut(s)	226, 859
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	2 cut(s)	617, 886
SmiMI	CAYNNNNRTG	1 cut(s)	774
SsiI	CCGC	3 cut(s)	143, 374, 377
SspMI	CTAG	3 cut(s)	78, 804, 893
StyD4I	CCNGG	3 cut(s)	84, 619, 862
StyI	CCWWGG	2 cut(s)	437, 919
TaaI	ACNGT	2 cut(s)	116, 1022
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	941, 961, 1041
TaqII	GACCGA	1 cut(s)	874
TauI	GCSGC	2 cut(s)	376, 379
TfiI	GAWTC	1 cut(s)	809
TscAI	CASTG	2 cut(s)	28, 46
TseFI	GTSAC	4 cut(s)	80, 131, 930, 1022
TseI	GCWGC	5 cut(s)	401, 638, 641, 644, 647
Tsp45I	GTSAC	4 cut(s)	80, 131, 930, 1022
TspDTI	ATGAA	2 cut(s)	234, 560
TspGWI	ACGGA	2 cut(s)	296, 918
TspRI	CASTG	2 cut(s)	28, 46
VpaK11BI	GGWCC	2 cut(s)	617, 886
XapI	RAATTY	2 cut(s)	302, 453
XcmI	CCANNNNNNNNNTGG	2 cut(s)	38, 749
XmnI	GAANNNNTTC	2 cut(s)	275, 363
XspI	CTAG	3 cut(s)	78, 804, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.