Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001755

Orthogroup ID

OG0012536

Physical Location & Seq

Genomic Coordinates Forward (+)

94018 .. 95490

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGCTTTGATTGTCGACCAGCAATCAAGCTTCAAACATTTCTGTAAAATTTGCAAGAAAGGTTTTGGGTGTGGTAGAGCGTTAGGAGGGCACATGAGGGCACATGGAATAGGGGATGAAGGTCACATCGACGACGATGATCCTCTGAGTGATTGGGAGGACAAACTCGGCGGCAATGTACCCTCCACCAACAAGTGCATGTATGCCCTAAGAAAAAACCCAAATCGCCTCAAAAGCTGCCGGGTTTGTGAGAATTGTGGCAAAGAATTCTTGTCCTGGAAATCCTTCCTTGAACATGGGAAATGTAGTAGCTCTGTAGATGCAGAGTCCCTTGTGTCCTCGCCGGGCTCTGATGGGGAGGATGGGACTGGTGGCAGCCGGCGAGGATGTGGGTGGTCAAAAAGGAAGAGATCATTTAGAGCCAAAGTGGGAAATTTCAGTCCACATTGCCCATCAAATGAGGAAGAAGACCTTGCCAATTGCTTAATGATGTTGTCTAATGCCACGGTGGATCCAATGGAAGTAGAACCAGAAGAGTCTTGTGCTTCGGCGAGCAAAGAGGAGGAACGAAGAAACCCTATGAACATAATGAGTCCTATGTCACGTGGGTTGACAATTGACAACAATAAGTTGAAGGGGGTCGCTAATAAATGCTTGTTCGAATGCAAAGCATGCAAGAAAGTGTTCAATTCCCACCAAGCATTGGGCGGTCATAGGGCTAGCCACAAGAAAGTTAAAGGGTGCTTCGCCGCCAGGCTTGATCACCTCGAAGATAGTATGGCCGATGATGATGTCATCACACATGAAGAATTCTTTCCCAATAAATCCAATTCAACCCTACAATTCGATCATGGGTCTAATACTCCATCAGCTTACACCTCGAAGAGAAAATCGAAGGTGCATGAATGTTCAATATGTCATCGTATATTTTCATCAGGGCAAGCATTGGGTGGGCACAAGAGGTGTCATTGGATCACGTCCAACTCCACGTCAAACACGTATACTCTAGCCAAGTTCCACGAATTTCAAGAGAGTTTGGAGCAACAAATGATGAACCAAAAGCCCATGTTTGATGCTTTGGATCCACTTGATCTGAAGCTTGATCTTAACCTACCAGCTCCAATGGATGAGAATGGAGTAGGTAGAAGAGATCATCCCAATCCATCAAGCTTGGATGTCTCTACAGATTTCTTTTTACAGCCATGGATTGGGAAAAAGGAGGAGGACAATCCCCAACACCACTCACACCACCAAAACGACAATGACAACATTAACAACGACGGCTATAATCATAATAACAACAACAATAATAACAGCAGTGATGTTTCAATGCAGAATGTGGTTGATGAAGCAGACAGTAAGGTAAAGTTAGCAAAGCTGAGTGAACTAAACGATATTACCAACAGTGGGGGCTCCTCACCATGGTTGCAGGTGGGGATTGGTTCAACAACTGATGTTGGAGCTGACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

491

Amino Acids

54.17

Weight (kDa)

6.09

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	220 - 244	1.4e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	300 - 324	1.2e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02040
fragaria_vesca	FvH4_7g10970
malus_domestica	MD02G1211300.v1.1 MD07G1113900.v1.1
prunus_persica	Prupe.2G136600_v2.0.a1 Prupe.2G136600_v2.0.a1
pyrus_communis	pycom07g09880 pycom1755g00040
rosa_chinensis	RchiOBHm_Chr1g0348911
rosa_laevigata	RLG00000028618
rosa_multiflora	Rmu_sc0000156.1_g000017
rosa_roxburghii	Rroxscaffold_4G00306530
rosa_rugosa	Rorug01G0198400
rosa_samantha	Rh1AG215800 Rh1BG182000 Rh1CG200200 Rh1DG211800
rosa_wichuraiana	Rw1G018290 Rw1G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1420
Acc36I	ACCTGC	1 cut(s)	1420
AccB7I	CCANNNNNTGG	2 cut(s)	703, 1208
AccI	GTMKAC	2 cut(s)	15, 1001
AciI	CCGC	3 cut(s)	171, 708, 750
AclWI	GGATC	6 cut(s)	134, 506, 519, 980, 1076, 1089
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	5 cut(s)	48, 266, 433, 809, 1022
AcuI	CTGAAG	1 cut(s)	1115
AcvI	CACGTG	1 cut(s)	605
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	9 cut(s)	34, 293, 634, 688, 834, 912, 1028, 1329, 1446
AjiI	CACGTC	2 cut(s)	978, 990
AjnI	CCWGG	2 cut(s)	275, 752
AluBI	AGCT	9 cut(s)	30, 237, 312, 872, 1099, 1118, 1170, 1378, 1463
AluI	AGCT	9 cut(s)	30, 237, 312, 872, 1099, 1118, 1170, 1378, 1463
Alw26I	GTCTC	1 cut(s)	1183
AlwI	GGATC	6 cut(s)	134, 506, 519, 980, 1076, 1089
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	2 cut(s)	237, 375
ApoI	RAATTY	5 cut(s)	48, 266, 433, 809, 1022
Asp700I	GAANNNNTTC	3 cut(s)	284, 683, 813
AsuC2I	CCSGG	2 cut(s)	242, 345
AsuHPI	GGTGA	2 cut(s)	755, 1410
AsuII	TTCGAA	1 cut(s)	660
AsuNHI	GCTAGC	1 cut(s)	719
BaeGI	GKGCMC	3 cut(s)	93, 103, 957
BamHI	GGATCC	2 cut(s)	511, 1081
BanII	GRGCYC	2 cut(s)	350, 1415
BbrPI	CACGTG	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	2 cut(s)	224, 387
BccI	CCATC	5 cut(s)	347, 356, 460, 874, 1171
BceAI	ACGGC	1 cut(s)	1297
BciT130I	CCWGG	2 cut(s)	277, 754
BclI	TGATCA	1 cut(s)	760
BcnI	CCSGG	2 cut(s)	242, 345
BcoDI	GTCTC	1 cut(s)	1183
BfaI	CTAG	2 cut(s)	720, 1007
BfmI	CTRYAG	2 cut(s)	315, 1182
BfuAI	ACCTGC	1 cut(s)	1420
BisI	GCNGC	4 cut(s)	172, 238, 376, 750
BlsI	GCNGC	4 cut(s)	173, 239, 377, 751
Bme1390I	CCNGG	4 cut(s)	242, 277, 345, 754
BmgBI	CACGTC	2 cut(s)	978, 990
BmiI	GGNNCC	3 cut(s)	513, 1083, 1414
BmrFI	CCNGG	4 cut(s)	242, 277, 345, 754
BmsI	GCATC	2 cut(s)	310, 1063
BmtI	GCTAGC	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	474
Bpu14I	TTCGAA	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	242, 345
BsaAI	YACGTR	2 cut(s)	605, 999
BsaJI	CCNNGG	3 cut(s)	504, 1202, 1421
Bsc4I	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	2 cut(s)	181, 445
BseBI	CCWGG	2 cut(s)	277, 754
BseDI	CCNNGG	3 cut(s)	504, 1202, 1421
BseGI	GGATG	6 cut(s)	121, 367, 392, 1132, 1153, 1180
BseLI	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
BseMI	GCAATG	2 cut(s)	181, 445
BseMII	CTCAG	2 cut(s)	137, 1370
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	3 cut(s)	575, 1235, 1405
BseSI	GKGCMC	3 cut(s)	93, 103, 957
BseXI	GCAGC	2 cut(s)	224, 387
BshFI	GGCC	1 cut(s)	782
BsiSI	CCGG	3 cut(s)	241, 344, 379
BslFI	GGGAC	2 cut(s)	313, 379
BslI	CCNNNNNNNGG	4 cut(s)	703, 1208, 1407, 1422
BsmAI	GTCTC	1 cut(s)	1183
BsmFI	GGGAC	2 cut(s)	313, 379
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	1 cut(s)	782
Bsp119I	TTCGAA	1 cut(s)	660
Bsp1286I	GDGCHC	5 cut(s)	93, 103, 350, 957, 1415
Bsp19I	CCATGG	2 cut(s)	1202, 1421
BspACI	CCGC	3 cut(s)	171, 708, 750
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	2 cut(s)	138, 1371
BspLI	GGNNCC	3 cut(s)	513, 1083, 1414
BspMI	ACCTGC	1 cut(s)	1420
BspOI	GCTAGC	1 cut(s)	723
BspPI	GGATC	6 cut(s)	134, 506, 519, 980, 1076, 1089
BspT104I	TTCGAA	1 cut(s)	660
BsrDI	GCAATG	2 cut(s)	181, 445
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	504, 1202, 1421
BssNAI	GTATAC	1 cut(s)	1002
BssT1I	CCWWGG	2 cut(s)	1202, 1421
Bst1107I	GTATAC	1 cut(s)	1002
Bst2UI	CCWGG	2 cut(s)	277, 754
Bst4CI	ACNGT	3 cut(s)	508, 1358, 1406
Bst6I	CTCTTC	4 cut(s)	401, 528, 878, 1141
BstAPI	GCANNNNNTGC	1 cut(s)	672
BstBAI	YACGTR	2 cut(s)	605, 999
BstBI	TTCGAA	1 cut(s)	660
BstC8I	GCNNGC	5 cut(s)	380, 553, 673, 721, 942
BstDEI	CTNAG	3 cut(s)	146, 209, 1379
BstDSI	CCRYGG	3 cut(s)	504, 1202, 1421
BstF5I	GGATG	6 cut(s)	121, 367, 392, 1132, 1153, 1180
BstMAI	GTCTC	1 cut(s)	1183
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 672
BstNI	CCWGG	2 cut(s)	277, 754
BstNSI	RCATGY	2 cut(s)	202, 675
BstSCI	CCNGG	4 cut(s)	240, 275, 343, 752
BstSFI	CTRYAG	2 cut(s)	315, 1182
BstSLI	GKGCMC	3 cut(s)	93, 103, 957
BstV1I	GCAGC	2 cut(s)	224, 387
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	511, 1081
BstYI	RGATCY	2 cut(s)	511, 1081
BstZ17I	GTATAC	1 cut(s)	1002
BsuRI	GGCC	1 cut(s)	782
BtgI	CCRYGG	3 cut(s)	504, 1202, 1421
BtrI	CACGTC	2 cut(s)	978, 990
BtsCI	GGATG	6 cut(s)	121, 367, 392, 1132, 1153, 1180
BtsI	GCAGTG	1 cut(s)	1324
BtsIMutI	CAGTG	2 cut(s)	1324, 1411
BveI	ACCTGC	1 cut(s)	1420
Cac8I	GCNNGC	5 cut(s)	380, 553, 673, 721, 942
Cfr10I	RCCGGY	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	179
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	3 cut(s)	146, 209, 1379
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	4 cut(s)	401, 528, 878, 1141
EarI	CTCTTC	4 cut(s)	401, 528, 878, 1141
Eco130I	CCWWGG	2 cut(s)	1202, 1421
Eco24I	GRGCYC	2 cut(s)	350, 1415
Eco57I	CTGAAG	1 cut(s)	1115
Eco72I	CACGTG	1 cut(s)	605
EcoRI	GAATTC	2 cut(s)	266, 809
EcoRII	CCWGG	2 cut(s)	275, 752
EcoT14I	CCWWGG	2 cut(s)	1202, 1421
EcoT38I	GRGCYC	2 cut(s)	350, 1415
ErhI	CCWWGG	2 cut(s)	1202, 1421
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	313, 379
FbaI	TGATCA	1 cut(s)	760
FblI	GTMKAC	2 cut(s)	15, 1001
Fnu4HI	GCNGC	4 cut(s)	172, 238, 376, 750
FokI	GGATG	6 cut(s)	128, 374, 399, 1139, 1140, 1187
FriOI	GRGCYC	2 cut(s)	350, 1415
Fsp4HI	GCNGC	4 cut(s)	172, 238, 376, 750
FspBI	CTAG	2 cut(s)	720, 1007
GluI	GCNGC	4 cut(s)	172, 238, 376, 750
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	3 cut(s)	241, 344, 379
HincII	GTYRAC	2 cut(s)	16, 612
HindII	GTYRAC	2 cut(s)	16, 612
HindIII	AAGCTT	3 cut(s)	28, 1097, 1168
HinfI	GANTC	3 cut(s)	326, 536, 592
HpaII	CCGG	3 cut(s)	241, 344, 379
HphI	GGTGA	2 cut(s)	755, 1410
Hpy166II	GTNNAC	5 cut(s)	16, 443, 612, 1002, 1385
Hpy188I	TCNGA	3 cut(s)	147, 352, 1095
Hpy188III	TCNNGA	1 cut(s)	1028
Hpy8I	GTNNAC	5 cut(s)	16, 443, 612, 1002, 1385
Hpy99I	CGWCG	3 cut(s)	134, 137, 1283
HpyAV	CCTTC	4 cut(s)	113, 295, 628, 889
HpyCH4III	ACNGT	3 cut(s)	508, 1358, 1406
HpyCH4IV	ACGT	4 cut(s)	604, 977, 989, 998
HpyCH4V	TGCA	8 cut(s)	54, 198, 323, 666, 675, 901, 1333, 1429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 672
HpyF3I	CTNAG	3 cut(s)	146, 209, 1379
HpySE526I	ACGT	4 cut(s)	604, 977, 989, 998
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	760
LmnI	GCTCC	4 cut(s)	1039, 1123, 1418, 1460
Lsp1109I	GCAGC	2 cut(s)	224, 387
LweI	GCATC	2 cut(s)	310, 1063
MaeI	CTAG	2 cut(s)	720, 1007
MaeII	ACGT	4 cut(s)	604, 977, 989, 998
MaeIII	GTNAC	2 cut(s)	122, 600
MboII	GAAGA	9 cut(s)	418, 476, 479, 545, 582, 782, 818, 895, 1158
MfeI	CAATTG	2 cut(s)	478, 615
MflI	RGATCY	2 cut(s)	511, 1081
MhlI	GDGCHC	5 cut(s)	93, 103, 350, 957, 1415
MlyI	GAGTC	3 cut(s)	335, 545, 601
MmeI	TCCRAC	2 cut(s)	1005, 1438
MroNI	GCCGGC	1 cut(s)	378
MroXI	GAANNNNTTC	3 cut(s)	284, 683, 813
MseI	TTAA	4 cut(s)	485, 735, 1107, 1272
MspI	CCGG	3 cut(s)	241, 344, 379
MspR9I	CCNGG	4 cut(s)	242, 277, 345, 754
MunI	CAATTG	2 cut(s)	478, 615
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	2 cut(s)	277, 754
MwoI	GCNNNNNNNGC	2 cut(s)	234, 672
NaeI	GCCGGC	1 cut(s)	380
NciI	CCSGG	2 cut(s)	242, 345
NcoI	CCATGG	2 cut(s)	1202, 1421
NgoMIV	GCCGGC	1 cut(s)	378
NheI	GCTAGC	1 cut(s)	719
NlaIV	GGNNCC	3 cut(s)	513, 1083, 1414
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	122, 600
NspI	RCATGY	2 cut(s)	202, 675
NspV	TTCGAA	1 cut(s)	660
PaeI	GCATGC	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	1420
PcsI	WCGNNNNNNNCGW	1 cut(s)	995
PctI	GAATGC	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	380
PdmI	GAANNNNTTC	3 cut(s)	284, 683, 813
PflMI	CCANNNNNTGG	2 cut(s)	703, 1208
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	173, 239, 377, 751
PleI	GAGTC	3 cut(s)	334, 544, 600
PmaCI	CACGTG	1 cut(s)	605
PmlI	CACGTG	1 cut(s)	605
PpsI	GAGTC	3 cut(s)	334, 544, 600
Ppu21I	YACGTR	2 cut(s)	605, 999
Psp6I	CCWGG	2 cut(s)	275, 752
PspCI	CACGTG	1 cut(s)	605
PspGI	CCWGG	2 cut(s)	275, 752
PspN4I	GGNNCC	3 cut(s)	513, 1083, 1414
PsuI	RGATCY	2 cut(s)	511, 1081
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	485, 735, 1107, 1272
SatI	GCNGC	4 cut(s)	172, 238, 376, 750
SchI	GAGTC	3 cut(s)	335, 545, 601
ScrFI	CCNGG	4 cut(s)	242, 277, 345, 754
SduI	GDGCHC	5 cut(s)	93, 103, 350, 957, 1415
SfaNI	GCATC	2 cut(s)	310, 1063
SfcI	CTRYAG	2 cut(s)	315, 1182
SfuI	TTCGAA	1 cut(s)	660
SphI	GCATGC	1 cut(s)	675
SsiI	CCGC	3 cut(s)	171, 708, 750
SspMI	CTAG	2 cut(s)	720, 1007
StyD4I	CCNGG	4 cut(s)	240, 275, 343, 752
StyI	CCWWGG	2 cut(s)	1202, 1421
TaaI	ACNGT	3 cut(s)	508, 1358, 1406
TaiI	ACGT	4 cut(s)	607, 980, 992, 1001
TaqI	TCGA	7 cut(s)	15, 129, 660, 768, 846, 881, 893
TauI	GCSGC	2 cut(s)	174, 752
Tru1I	TTAA	4 cut(s)	485, 735, 1107, 1272
Tru9I	TTAA	4 cut(s)	485, 735, 1107, 1272
TscAI	CASTG	2 cut(s)	1324, 1411
TseFI	GTSAC	2 cut(s)	122, 600
TseI	GCWGC	2 cut(s)	237, 375
Tsp45I	GTSAC	2 cut(s)	122, 600
TspDTI	ATGAA	7 cut(s)	132, 596, 819, 918, 921, 1067, 1362
TspRI	CASTG	2 cut(s)	1324, 1411
Van91I	CCANNNNNTGG	2 cut(s)	703, 1208
XapI	RAATTY	5 cut(s)	48, 266, 433, 809, 1022
XceI	RCATGY	2 cut(s)	202, 675
XmiI	GTMKAC	2 cut(s)	15, 1001
XmnI	GAANNNNTTC	3 cut(s)	284, 683, 813
XspI	CTAG	2 cut(s)	720, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.