pycom17g02650

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013925
Physical Location & Seq
Forward (+)
1790347 .. 1790808
462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGCCGGATTGCATATTTGCTCCCTATTTCCCACCGGAGGAGCCCCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGTAATGTGAGTAAGCTTCTCAATGAAGTCCACCCCCACCAGAGAGAAGATGCCGTGAACTCTTTGGCCTACGAAGCTGAGGCTCGGATGAAAGATCCTGTCTACGGATGTGTTGGAGCCATCTCAGTCCTCCAAAGGCAAGTCATTCGCCTTCAGAAGGAGTTGGACGAGACAAATGCTGATCTCGTCCGGTATGCCAGCAGCTACAACCATGAAATATTGTTGCCAACATCTCAGTCCGAGAGGTCTAGTAGTAGTAGGGTTCGTGGAGGAGGGTCTCTAGGTCAAAATTCTGGTTCGTATTTTTCTCCATCATGGAATAGAAATGCTTATGGAGAAAGAGATTATGAGAGAGGAGGAGAAGGAGAAGGAGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

154

Amino Acids

17.04

Weight (kDa)

5.37

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 86 5.7e-33 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27650
fragaria_vesca FvH4_6g51300 FvH4_6g51300 FvH4_6g51300
malus_domestica MD17G1029300.v1.1
prunus_persica Prupe.3G290800_v2.0.a1
pyrus_communis pycom17g02650
rosa_chinensis RchiOBHm_Chr2g0172921
rosa_laevigata RLG00000022142
rosa_multiflora Rmu_sc0009727.1_g000002
rosa_roxburghii Rroxscaffold_2G00079420
rosa_rugosa Rorug02G0563600
rosa_samantha Rh2AG640400 Rh2BG653900 Rh2CG619500 Rh2DG667500
rosa_wichuraiana Rw2G052860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 37, 185, 238
AluBI AGCT 3 cut(s) 97, 158, 285
AluI AGCT 3 cut(s) 97, 158, 285
Alw26I GTCTC 2 cut(s) 245, 363
AlwI GGATC 1 cut(s) 170
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 370
BanII GRGCYC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 209, 400
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 4 cut(s) 209, 239, 243, 273
BcoDI GTCTC 2 cut(s) 245, 363
BfaI CTAG 2 cut(s) 330, 362
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 42, 199
BmsI GCATC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 363
BsaWI WCCGGW 2 cut(s) 34, 270
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 185, 238
BseGI GGATG 2 cut(s) 174, 194
BseLI CCNNNNNNNGG 3 cut(s) 37, 185, 238
BseMII CTCAG 3 cut(s) 150, 219, 329
BseRI GAGGAG 4 cut(s) 53, 366, 450, 453
BseXI GCAGC 1 cut(s) 294
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 3 cut(s) 5, 35, 271
BslI CCNNNNNNNGG 3 cut(s) 37, 185, 238
BsmAI GTCTC 2 cut(s) 245, 363
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 175, 262
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 3 cut(s) 151, 218, 328
BspLI GGNNCC 2 cut(s) 42, 199
BspPI GGATC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 363
BssMI GATC 2 cut(s) 175, 262
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 3 cut(s) 159, 205, 315
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 174, 194
BstKTI GATC 2 cut(s) 178, 265
BstMAI GTCTC 2 cut(s) 245, 363
BstMBI GATC 2 cut(s) 175, 262
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 174, 194
Cac8I GCNNGC 1 cut(s) 280
CviAII CATG 2 cut(s) 293, 396
CviJI RGCY 7 cut(s) 43, 97, 149, 158, 164, 200, 285
CviKI_1 RGCY 7 cut(s) 43, 97, 149, 158, 164, 200, 285
DdeI CTNAG 3 cut(s) 159, 205, 315
DpnI GATC 2 cut(s) 177, 264
DpnII GATC 2 cut(s) 175, 262
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 2 cut(s) 296, 399
FaiI YATR 8 cut(s) 14, 276, 294, 397, 414, 429, 458, 460
FatI CATG 2 cut(s) 292, 395
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 2 cut(s) 181, 201
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 2 cut(s) 330, 362
GluI GCNGC 1 cut(s) 283
HaeIII GGCC 1 cut(s) 149
HapII CCGG 3 cut(s) 5, 35, 271
Hin1II CATG 2 cut(s) 296, 399
HindIII AAGCTT 1 cut(s) 95
HpaII CCGG 3 cut(s) 5, 35, 271
Hpy166II GTNNAC 4 cut(s) 64, 112, 139, 184
Hpy188I TCNGA 3 cut(s) 168, 237, 322
Hpy8I GTNNAC 4 cut(s) 64, 112, 139, 184
HpyAV CCTTC 4 cut(s) 232, 242, 437, 443
HpyCH4V TGCA 2 cut(s) 12, 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 159, 205, 315
Hsp92II CATG 2 cut(s) 296, 399
Kzo9I GATC 2 cut(s) 175, 262
LmnI GCTCC 3 cut(s) 25, 40, 197
LpnPI CCDG 7 cut(s) 18, 48, 134, 192, 284, 292, 360
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 330, 362
MalI GATC 2 cut(s) 177, 264
MboI GATC 2 cut(s) 175, 262
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 370
MmeI TCCRAC 2 cut(s) 175, 225
MnlI CCTC 8 cut(s) 31, 154, 221, 318, 344, 347, 428, 431
MspI CCGG 3 cut(s) 5, 35, 271
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 2 cut(s) 175, 262
NlaIII CATG 2 cut(s) 296, 399
NlaIV GGNNCC 2 cut(s) 42, 199
PkrI GCNGC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 42, 199
PsuI RGATCY 1 cut(s) 175
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 175, 262
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 99, 160, 287, 329, 367
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 1 cut(s) 370
SspI AATATT 1 cut(s) 300
SspMI CTAG 2 cut(s) 330, 362
TasI AATT 1 cut(s) 370
TseI GCWGC 1 cut(s) 282
TspDTI ATGAA 3 cut(s) 120, 185, 309
TspGWI ACGGA 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 330, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.