pycom17g03050

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014139
Physical Location & Seq
Reverse (-)
2000110 .. 2001988
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGGCAAGCGAGCCAACCCGGATAATGCTGGCAGTGAACGAGTCGACCATCAAGGGCTACCCGCACCCCTCCATCAGCAGCAGGAAGGCGTTCGAGTGGACGCTCCAGAAGATCGTGCGCTCCAACACCGGTGGTTTCAAGCTCCAGTTCCTGCACGTCCAAGTCCCCGATGAAGACGGTTTTGATGACATGGACAGTGTCTATGCATCGCCGGAGGATTTTAAGAACATGAAGGACAGAGACCGCGCCAGAGGGCTTCATCTGCTGGAGTTCTTTGTTGACAGATGTCATGCAATTGGGGTTGCTTGTGAAGCATGGATCAAAAGAGGGGACGCCAAGGAAGTAATCTGCCGTGAGGTGAGGCGTGTCCAGCCAGACTTTCTGGTGGTGGGCTGTCGGGGGCTTGGACCTTTCCAGAGGGTTTTTGTTGGGACTGTGAGCGAGTTCTGTGTGAAGCACGCTGAGTGCCCCGTCATCACAATCAAGCGCAGTGCAGAGGAAACACCCCAGGATCCTGTCGATGACTGA

Protein Analysis

176

Amino Acids

19.81

Weight (kDa)

5.97

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 24 - 162 5.5e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01520 AT5G14680
fragaria_vesca FvH4_6g50880
malus_domestica MD09G1031200.v1.1 MD17G1033100.v1.1
prunus_persica Prupe.3G286400_v2.0.a1
pyrus_communis pycom17g03050
rosa_chinensis RchiOBHm_Chr2g0172261
rosa_laevigata RLG00000022099
rosa_multiflora Rmu_ssc0000103.1_g000006
rosa_roxburghii Rroxscaffold_2G00080020
rosa_rugosa Rorug02G0558200
rosa_samantha Rh2AG633200 Rh2BG646800 Rh2CG613800 Rh2DG661700
rosa_wichuraiana Rw2G052430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 44
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 62, 244
AclWI GGATC 3 cut(s) 326, 506, 519
AcyI GRCGYC 1 cut(s) 333
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 3 cut(s) 326, 506, 519
AlwNI CAGNNNCTG 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 3 cut(s) 120, 248, 489
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 56, 80
BceAI ACGGC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 2 cut(s) 19, 509
Bme18I GGWCC 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 513
BmrFI CCNGG 2 cut(s) 19, 509
BmsI GCATC 1 cut(s) 215
BoxI GACNNNNGTC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 3 cut(s) 89, 128, 287
BpuMI CCSGG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 336, 507
BsaWI WCCGGW 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 336, 507
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 470
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 2 cut(s) 137, 513
Bsh1236I CGCG 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 128
BsiSI CCGG 3 cut(s) 19, 129, 212
BslFI GGGAC 3 cut(s) 149, 344, 445
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 3 cut(s) 149, 344, 445
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 111, 318, 511
BspACI CCGC 2 cut(s) 62, 244
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 3 cut(s) 326, 506, 519
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 336, 507
BssMI GATC 3 cut(s) 111, 318, 511
BssNI GRCGYC 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 179, 197, 436
BstACI GRCGYC 1 cut(s) 333
BstC8I GCNNGC 4 cut(s) 7, 11, 30, 459
BstDEI CTNAG 1 cut(s) 462
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 3 cut(s) 120, 248, 489
BstKTI GATC 3 cut(s) 114, 321, 514
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 3 cut(s) 111, 318, 511
BstMWI GCNNNNNNNGC 3 cut(s) 262, 311, 370
BstNI CCWGG 1 cut(s) 509
BstPAI GACNNNNGTC 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 17, 507
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BtgZI GCGATG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 157
BtsI GCAGTG 2 cut(s) 39, 496
BtsIMutI CAGTG 3 cut(s) 39, 202, 496
Cac8I GCNNGC 4 cut(s) 7, 11, 30, 459
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 3 cut(s) 120, 248, 489
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 407
CseI GACGC 2 cut(s) 109, 341
CspAI ACCGGT 1 cut(s) 128
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 4 cut(s) 190, 229, 290, 315
CviJI RGCY 7 cut(s) 13, 57, 142, 256, 373, 393, 403
CviKI_1 RGCY 7 cut(s) 13, 57, 142, 256, 373, 393, 403
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 113, 320, 513
DpnII GATC 3 cut(s) 111, 318, 511
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 193, 232, 293, 318
FaiI YATR 5 cut(s) 191, 204, 230, 291, 316
FaqI GGGAC 3 cut(s) 149, 344, 445
FatI CATG 4 cut(s) 189, 228, 289, 314
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 79
GlaI GCGC 3 cut(s) 119, 247, 488
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 3 cut(s) 89, 128, 287
HapII CCGG 3 cut(s) 19, 129, 212
HgaI GACGC 2 cut(s) 109, 341
HhaI GCGC 3 cut(s) 120, 248, 489
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 4 cut(s) 193, 232, 293, 318
Hin6I GCGC 3 cut(s) 118, 246, 487
HinP1I GCGC 3 cut(s) 118, 246, 487
HincII GTYRAC 2 cut(s) 45, 280
HindII GTYRAC 2 cut(s) 45, 280
HinfI GANTC 1 cut(s) 41
HpaII CCGG 3 cut(s) 19, 129, 212
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 4 cut(s) 37, 45, 99, 280
Hpy188III TCNNGA 2 cut(s) 106, 415
Hpy8I GTNNAC 4 cut(s) 37, 45, 99, 280
HpyAV CCTTC 2 cut(s) 79, 226
HpyCH4III ACNGT 3 cut(s) 179, 197, 436
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 154, 206, 293, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 311, 370
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 4 cut(s) 193, 232, 293, 318
HspAI GCGC 3 cut(s) 118, 246, 487
Kzo9I GATC 3 cut(s) 111, 318, 511
LmnI GCTCC 3 cut(s) 108, 125, 147
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 215
MaeII ACGT 1 cut(s) 156
MalI GATC 3 cut(s) 113, 320, 513
MboI GATC 3 cut(s) 111, 318, 511
MboII GAAGA 2 cut(s) 121, 185
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 8 cut(s) 79, 208, 245, 320, 349, 354, 411, 490
Mph1103I ATGCAT 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 1 cut(s) 222
MspI CCGG 3 cut(s) 19, 129, 212
MspR9I CCNGG 2 cut(s) 19, 509
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 262, 311, 370
NciI CCSGG 1 cut(s) 19
NdeII GATC 3 cut(s) 111, 318, 511
NlaIII CATG 4 cut(s) 193, 232, 293, 318
NlaIV GGNNCC 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 89
PflFI GACNNNGTC 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 513
PspPI GGNCC 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 511
PsyI GACNNNGTC 1 cut(s) 197
SalI GTCGAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 3 cut(s) 111, 318, 511
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 19, 509
SduI GDGCHC 1 cut(s) 470
SetI ASST 4 cut(s) 144, 159, 360, 412
SfaNI GCATC 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 407
Sse9I AATT 1 cut(s) 294
SsiI CCGC 2 cut(s) 62, 244
StyD4I CCNGG 2 cut(s) 17, 507
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 3 cut(s) 179, 197, 436
TaiI ACGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 44, 93, 519
TasI AATT 1 cut(s) 294
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 39, 202, 496
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 3 cut(s) 186, 245, 248
TspRI CASTG 3 cut(s) 39, 202, 496
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.