Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011178

Physical Location & Seq

Genomic Coordinates Reverse (-)

2103730 .. 2104983

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTGGTTGTATCATCCACTTCCCCTTCTCTCAAATCCAATTTCACTCCCCAACTCTCCACCGCCGCAAACCACCACCTCAGCAACCCTTCCCGCCACCTCATTTCGCCGTCTCTGCTATACCTCGGCCAAATCTATGGCGACCCCACGAGACAGAAGAATTCCAAAGCCCCAAGCTCAAGTGGATTTTTGTCTGTTAAAGCTTATGTGGACAACCCAAATTCCATCTCCAGCTTCGCCAGCAAGGTCATCGGCTCACTCCCGGTTGTCGGTTTGATAGCGAGGATTCTCAGCGACGAAGGAGGCCTCGGCGGAGACACCGTTGATTTCGCAGAGTTTCGGAGGCGGGTGGGGAAGAAGTGCACTACTGATGATTCTAGAGCTTTTTATGAGTTCCAAGATCGACGAGGCCGGGCAGGGGATCCTCTGTATGTTCTAATGTGCTGTTGGGTAGCAGCCATTGGTGCCGGACTTCTGAAATCCGAAGAGATTTTAGAAGGGGCGGCGAGGCTGCGTGTTTCAAATGATATCGAATTCGAAGAGCAGAATTTCATTTCCTTGATCAACGAGGCAAAAGAGAGACGGGCGAAACTAAAGGCTCCTACACCAATTATCCCTATGGAGATTCGGGTTGAGAAAGCTCTTGAAGGGATTTACCTCTGTTGCTTCGGGAAAGATCCTATCGAAGAAGAAGACGAGAGACTTCTAAATGTAATGCTTAGGGCTGTTTATCCATCCGTTGAGCGGTCTGAGCTACAACGGATTATTAAGGAAAAGGCACAGAAAGTATCCGATGGAAGTACTGATGGCAGCGTTCGAGAGCCAAAGCCCCTATCGAAAGAAGCTGTTCAAATGCAGATGAAGGACCTCCAATTCCTTCAACAAAATAGAGATAGAGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048564 GO:0055035 GO:0065003 GO:0071840 GO:0098552 GO:0098572

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.41

Weight (kDa)

7.6

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55250
fragaria_vesca	FvH4_6g50620 FvH4_6g50620
malus_domestica	MD09G1034700.v1.1 MD17G1035000.v1.1
prunus_persica	Prupe.3G283800_v2.0.a1
pyrus_communis	pycom111g02760 pycom17g03230
rosa_chinensis	RchiOBHm_Chr2g0171411
rosa_laevigata	RLG00000022011
rosa_multiflora	Rmu_sc0007646.1_g000007 Rmu_sc0030144.1_g000003
rosa_roxburghii	Rroxscaffold_2G00080680
rosa_rugosa	Rorug02G0554000
rosa_samantha	Rh2AG628300 Rh2BG638700 Rh2CG607400 Rh2DG649700 Rh2DG655800
rosa_wichuraiana	Rw2G052040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	464
AccBSI	CCGCTC	1 cut(s)	745
AciI	CCGC	7 cut(s)	63, 66, 94, 312, 346, 503, 745
AclWI	GGATC	3 cut(s)	416, 429, 671
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	4 cut(s)	160, 220, 533, 547
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	3 cut(s)	269, 418, 744
AgsI	TTSAA	4 cut(s)	522, 647, 851, 881
AluBI	AGCT	7 cut(s)	177, 203, 234, 383, 641, 754, 845
AluI	AGCT	7 cut(s)	177, 203, 234, 383, 641, 754, 845
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	6 cut(s)	117, 145, 309, 574, 694, 891
Alw44I	GTGCAC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	416, 429, 671
AoxI	GGCC	3 cut(s)	127, 304, 409
ApaLI	GTGCAC	1 cut(s)	361
ApeKI	GCWGC	3 cut(s)	455, 511, 810
ApoI	RAATTY	4 cut(s)	160, 220, 533, 547
Asp700I	GAANNNNTTC	1 cut(s)	846
AspS9I	GGNCC	1 cut(s)	865
AsuC2I	CCSGG	2 cut(s)	263, 413
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	865
BaeGI	GKGCMC	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	464
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	467, 498, 822
BccI	CCATC	4 cut(s)	233, 742, 788, 800
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	2 cut(s)	263, 413
BcoDI	GTCTC	6 cut(s)	117, 145, 309, 574, 694, 891
BfaI	CTAG	1 cut(s)	378
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	66, 456, 504, 512, 811
BlsI	GCNGC	5 cut(s)	67, 457, 505, 513, 812
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	263, 413
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	3 cut(s)	423, 466, 600
BmrFI	CCNGG	2 cut(s)	263, 413
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	2 cut(s)	80, 719
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	263, 413
BsaJI	CCNNGG	2 cut(s)	124, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 418, 744
BseDI	CCNNGG	2 cut(s)	124, 307
BseGI	GGATG	2 cut(s)	14, 734
BseLI	CCNNNNNNNGG	3 cut(s)	269, 418, 744
BseMII	CTCAG	3 cut(s)	94, 304, 741
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	467, 498, 822
BshFI	GGCC	3 cut(s)	129, 306, 411
BshNI	GGYRCC	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	263, 412, 468
BslI	CCNNNNNNNGG	3 cut(s)	269, 418, 744
BsmAI	GTCTC	6 cut(s)	117, 145, 309, 574, 694, 891
BsmBI	CGTCTC	2 cut(s)	117, 574
BsnI	GGCC	3 cut(s)	129, 306, 411
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	400, 421, 561, 676
BspACI	CCGC	7 cut(s)	63, 66, 94, 312, 346, 503, 745
BspANI	GGCC	3 cut(s)	129, 306, 411
BspCNI	CTCAG	3 cut(s)	93, 303, 742
BspLI	GGNNCC	3 cut(s)	423, 466, 600
BspPI	GGATC	3 cut(s)	416, 429, 671
BspQI	GCTCTTC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	124, 307
BssMI	GATC	4 cut(s)	400, 421, 561, 676
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	480, 534
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	80, 290, 719, 750
BstF5I	GGATG	2 cut(s)	14, 734
BstKTI	GATC	4 cut(s)	403, 424, 564, 679
BstMAI	GTCTC	6 cut(s)	117, 145, 309, 574, 694, 891
BstMBI	GATC	4 cut(s)	400, 421, 561, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 240, 464, 751
BstSCI	CCNGG	2 cut(s)	261, 411
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	467, 498, 822
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	2 cut(s)	421, 676
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	2 cut(s)	421, 676
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	3 cut(s)	129, 306, 411
BtsCI	GGATG	2 cut(s)	14, 734
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	865
Csp6I	GTAC	1 cut(s)	801
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	4 cut(s)	80, 290, 719, 750
DpnI	GATC	4 cut(s)	402, 423, 563, 678
DpnII	GATC	4 cut(s)	400, 421, 561, 676
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	480, 534
EarI	CTCTTC	2 cut(s)	480, 534
EciI	GGCGGA	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	306
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	865
EcoO109I	RGGNCCY	1 cut(s)	865
EcoRI	GAATTC	2 cut(s)	160, 533
EcoRV	GATATC	1 cut(s)	529
Esp3I	CGTCTC	2 cut(s)	117, 574
FaiI	YATR	6 cut(s)	121, 138, 207, 390, 432, 620
FauI	CCCGC	2 cut(s)	101, 339
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	66, 456, 504, 512, 811
FokI	GGATG	1 cut(s)	721
Fsp4HI	GCNGC	5 cut(s)	66, 456, 504, 512, 811
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	5 cut(s)	66, 456, 504, 512, 811
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	129, 306, 411
HapII	CCGG	3 cut(s)	263, 412, 468
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	3 cut(s)	286, 374, 625
HpaII	CCGG	3 cut(s)	263, 412, 468
Hpy166II	GTNNAC	2 cut(s)	211, 363
Hpy188I	TCNGA	5 cut(s)	342, 477, 484, 751, 793
Hpy188III	TCNNGA	4 cut(s)	378, 644, 670, 818
Hpy8I	GTNNAC	2 cut(s)	211, 363
Hpy99I	CGWCG	2 cut(s)	299, 408
HpyAV	CCTTC	7 cut(s)	36, 99, 293, 491, 641, 856, 887
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	363, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 240, 464, 751
HpyF3I	CTNAG	4 cut(s)	80, 290, 719, 750
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	400, 421, 561, 676
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	604
LpnPI	CCDG	6 cut(s)	244, 253, 276, 402, 425, 481
Lsp1109I	GCAGC	3 cut(s)	467, 498, 822
MaeI	CTAG	1 cut(s)	378
MalI	GATC	4 cut(s)	402, 423, 563, 678
MbiI	CCGCTC	1 cut(s)	745
MboI	GATC	4 cut(s)	400, 421, 561, 676
MboII	GAAGA	7 cut(s)	169, 367, 497, 551, 698, 701, 704
MflI	RGATCY	2 cut(s)	421, 676
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	7 cut(s)	40, 160, 220, 533, 547, 609, 872
MroXI	GAANNNNTTC	1 cut(s)	846
MseI	TTAA	2 cut(s)	198, 768
MspI	CCGG	3 cut(s)	263, 412, 468
MspR9I	CCNGG	2 cut(s)	263, 413
MwoI	GCNNNNNNNGC	4 cut(s)	115, 240, 464, 751
NciI	CCSGG	2 cut(s)	263, 413
NdeII	GATC	4 cut(s)	400, 421, 561, 676
NlaIV	GGNNCC	3 cut(s)	423, 466, 600
NmeAIII	GCCGAG	2 cut(s)	105, 288
NspV	TTCGAA	1 cut(s)	537
PceI	AGGCCT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	3 cut(s)	286, 374, 625
PkrI	GCNGC	5 cut(s)	67, 457, 505, 513, 812
PpuMI	RGGWCCY	1 cut(s)	865
Psp5II	RGGWCCY	1 cut(s)	865
PspN4I	GGNNCC	3 cut(s)	423, 466, 600
PspPI	GGNCC	1 cut(s)	865
PspPPI	RGGWCCY	1 cut(s)	865
PsuI	RGATCY	2 cut(s)	421, 676
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	198, 768
SatI	GCNGC	5 cut(s)	66, 456, 504, 512, 811
Sau3AI	GATC	4 cut(s)	400, 421, 561, 676
Sau96I	GGNCC	1 cut(s)	865
ScaI	AGTACT	1 cut(s)	802
ScrFI	CCNGG	2 cut(s)	263, 413
SduI	GDGCHC	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	1 cut(s)	865
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	7 cut(s)	40, 160, 220, 533, 547, 609, 872
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	7 cut(s)	63, 66, 94, 312, 346, 503, 745
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	261, 411
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	6 cut(s)	403, 531, 537, 684, 817, 836
TasI	AATT	7 cut(s)	40, 160, 220, 533, 547, 609, 872
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	2 cut(s)	68, 506
TfiI	GAWTC	3 cut(s)	286, 374, 625
Tru1I	TTAA	2 cut(s)	198, 768
Tru9I	TTAA	2 cut(s)	198, 768
TseI	GCWGC	3 cut(s)	455, 511, 810
TspDTI	ATGAA	2 cut(s)	541, 875
TspGWI	ACGGA	2 cut(s)	727, 775
VneI	GTGCAC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	4 cut(s)	160, 220, 533, 547
XbaI	TCTAGA	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.