Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011047

Physical Location & Seq

Genomic Coordinates Reverse (-)

2297808 .. 2301283

Gene Structure 3476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTACACGAATACGAGCTGCGCCATGATTCCGGAATCGAAAAATTGTTTCAGAAACGGGAGGAGGGACAGGGATTTTCTGAACTGGAGATGGAAACCGGACAAGTGCGAGCTTCCGCGGTTTGATCCGAAAACGTTTTTGGAAATCGTTCGGGGAAAGAGAATGGCGTTCGTCGGCGACTCGGTCGCGAGGAACCATGTAGAGTCTCTTCTCTGCCTCTTGTCACAGGAGGAAAACCCTAAAGACATCTACAAGGATTCCGAAGACCGGTTCAGGACATGGTACTTTCCTCGGTACAACTTCACCCTCATGAAATTATGGTCCAAATATCTCATAGCTGCTGAAGAGAAGATGGTTAATGGTTCAGGATCCGGCGTTTTTGATTTGCAACTAGACAAGGTCGACGACGTATGGGCAGACCACCTCCCGGATTTAGACTACGCTATAATCTCAGGCGGACATTGGTTTTTTCGTCTAATGTACCTACACGAAGGTGACAAACTCACCGGATGTGTCTATTGTAACAAACCTAATGTCACCGAATACAACAACAGCCACGCCCTGCGCATGGCATTTCGAGCTACATTCAAGTACATACAGGATTGCAAAAACTGCAAGGGAGGCCTCTTGACCTTGTTGAGGACATTTGCGCCGGCACATTTTGAGGGCGGGGCTTGGAACACCGGGGGATACTGCAACAGAACGAGTCCTTTGAGCGAGGGGGAAGTTGATTTAAAACGTTTCGATTGGGAGCTGAGGAGCATTCAGGTTGAGGAGTTTGAAAGAGCAAGAAAAGAAGGGGAGATGGAGGGGAGGAAGTTTAGGGTTTTGGATATAACCCGAGCCATGCTTATGCGACCGGACGGGCATCCCGGAGATCGCTCGGGAAACAAGTGGATGAAGGGTTACAACGACTGTGTGCACTGGTGCATGCCAGGCCCTGTTGATTATTGGAACCATTTTTTGATGGAGATTATCCGAAACGAGAGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

332

Amino Acids

38.91

Weight (kDa)

7.95

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	1 - 37	2.6e-12	PMR5 N terminal Domain
PC-Esterase	PF13839	38 - 324	1.1e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28150
fragaria_vesca	FvH4_6g50300 FvH4_6g50320 FvH4_6g50320 FvH4_6g50320
malus_domestica	MD09G1037400.v1.1 MD17G1038700.v1.1
prunus_persica	Prupe.3G280300_v2.0.a1
pyrus_communis	pycom111g03000 pycom17g03490
rosa_chinensis	RchiOBHm_Chr2g0170621
rosa_laevigata	RLG00000021969
rosa_multiflora	Rmu_sc0003787.1_g000032 Rmu_sc0010307.1_g000004
rosa_rugosa	Rorug02G0549800
rosa_samantha	Rh2AG622100 Rh2BG633400 Rh2CG602700 Rh2DG646200
rosa_wichuraiana	Rw2G051580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	2 cut(s)	118, 188
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	4 cut(s)	116, 118, 456, 669
AclI	AACGTT	2 cut(s)	134, 739
AclWI	GGATC	3 cut(s)	119, 363, 376
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	5 cut(s)	5, 284, 296, 482, 593
AfiI	CCNNNNNNNGG	4 cut(s)	267, 427, 568, 639
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	589, 782
AjnI	CCWGG	1 cut(s)	934
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	5 cut(s)	18, 112, 338, 581, 754
AluI	AGCT	5 cut(s)	18, 112, 338, 581, 754
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	1 cut(s)	210
Alw44I	GTGCAC	1 cut(s)	920
AlwI	GGATC	3 cut(s)	119, 363, 376
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	2 cut(s)	840, 883
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	2 cut(s)	622, 937
ApaLI	GTGCAC	1 cut(s)	920
ApeKI	GCWGC	2 cut(s)	18, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AsiGI	ACCGGT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	3 cut(s)	23, 567, 652
AspS9I	GGNCC	2 cut(s)	321, 938
AsuC2I	CCSGG	3 cut(s)	428, 685, 873
AsuHPI	GGTGA	4 cut(s)	295, 496, 506, 529
AvaI	CYCGRG	2 cut(s)	840, 883
AvaII	GGWCC	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	924
BamHI	GGATCC	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	924
BbvCI	CCTCAGC	1 cut(s)	755
BbvI	GCAGC	2 cut(s)	5, 325
BccI	CCATC	4 cut(s)	84, 346, 799, 961
BciT130I	CCWGG	1 cut(s)	936
BciVI	GTATCC	1 cut(s)	683
BcnI	CCSGG	3 cut(s)	428, 685, 873
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	2 cut(s)	19, 339
BlsI	GCNGC	2 cut(s)	20, 340
Bme1390I	CCNGG	4 cut(s)	428, 685, 873, 936
Bme18I	GGWCC	1 cut(s)	321
BmeT110I	CYCGRG	2 cut(s)	840, 883
BmgT120I	GGNCC	2 cut(s)	321, 938
BmiI	GGNNCC	3 cut(s)	194, 370, 956
BmrFI	CCNGG	4 cut(s)	428, 685, 873, 936
BmsI	GCATC	1 cut(s)	877
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	755
BpuMI	CCSGG	3 cut(s)	428, 685, 873
BsaJI	CCNNGG	3 cut(s)	116, 290, 684
BsaWI	WCCGGW	5 cut(s)	31, 97, 267, 506, 859
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 427, 568, 639
Bse118I	RCCGGY	2 cut(s)	267, 652
Bse1I	ACTGG	2 cut(s)	89, 929
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	3 cut(s)	116, 290, 684
BseGI	GGATG	3 cut(s)	515, 868, 903
BseLI	CCNNNNNNNGG	4 cut(s)	267, 427, 568, 639
BseMII	CTCAG	2 cut(s)	465, 746
BseNI	ACTGG	2 cut(s)	89, 929
BseRI	GAGGAG	3 cut(s)	76, 772, 788
BseSI	GKGCMC	1 cut(s)	924
BseXI	GCAGC	2 cut(s)	5, 325
Bsh1236I	CGCG	2 cut(s)	118, 188
Bsh1285I	CGRYCG	2 cut(s)	186, 860
BshFI	GGCC	2 cut(s)	624, 939
BshTI	ACCGGT	1 cut(s)	267
BsiEI	CGRYCG	2 cut(s)	186, 860
BsiHKAI	GWGCWC	1 cut(s)	924
BsiHKCI	CYCGRG	2 cut(s)	840, 883
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	267, 427, 568, 639
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	762
BsnI	GGCC	2 cut(s)	624, 939
BsoBI	CYCGRG	2 cut(s)	840, 883
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp13I	TCCGGA	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	124, 368, 877
Bsp68I	TCGCGA	1 cut(s)	188
BspACI	CCGC	4 cut(s)	116, 118, 456, 669
BspANI	GGCC	2 cut(s)	624, 939
BspCNI	CTCAG	2 cut(s)	464, 747
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	118, 188
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	194, 370, 956
BspPI	GGATC	3 cut(s)	119, 363, 376
BsrFI	RCCGGY	2 cut(s)	267, 652
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	89, 929
BssAI	RCCGGY	2 cut(s)	267, 652
BssECI	CCNNGG	3 cut(s)	116, 290, 684
BssMI	GATC	3 cut(s)	124, 368, 877
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	1 cut(s)	917
Bst6I	CTCTTC	2 cut(s)	213, 339
BstAPI	GCANNNNNTGC	1 cut(s)	612
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	110, 654, 932
BstDEI	CTNAG	2 cut(s)	451, 755
BstDSI	CCRYGG	1 cut(s)	116
BstENI	CCTNNNNNAGG	1 cut(s)	637
BstF5I	GGATG	3 cut(s)	515, 868, 903
BstFNI	CGCG	2 cut(s)	118, 188
BstHHI	GCGC	3 cut(s)	23, 567, 652
BstKTI	GATC	3 cut(s)	127, 371, 880
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	124, 368, 877
BstMCI	CGRYCG	2 cut(s)	186, 860
BstMWI	GCNNNNNNNGC	4 cut(s)	578, 612, 621, 936
BstNI	CCWGG	1 cut(s)	936
BstNSI	RCATGY	1 cut(s)	934
BstSCI	CCNGG	4 cut(s)	426, 683, 871, 934
BstSLI	GKGCMC	1 cut(s)	924
BstUI	CGCG	2 cut(s)	118, 188
BstV1I	GCAGC	2 cut(s)	5, 325
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	624, 939
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	515, 868, 903
BtsIMutI	CAGTG	1 cut(s)	922
BtuMI	TCGCGA	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	110, 654, 932
CaiI	CAGNNNCTG	1 cut(s)	941
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	3 cut(s)	23, 567, 652
Cfr10I	RCCGGY	2 cut(s)	267, 652
Cfr13I	GGNCC	2 cut(s)	321, 938
Cfr42I	CCGCGG	1 cut(s)	119
Csp6I	GTAC	5 cut(s)	4, 283, 295, 481, 592
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	7 cut(s)	25, 197, 279, 310, 568, 847, 931
CviQI	GTAC	5 cut(s)	4, 283, 295, 481, 592
DdeI	CTNAG	2 cut(s)	451, 755
DpnI	GATC	3 cut(s)	126, 370, 879
DpnII	GATC	3 cut(s)	124, 368, 877
DraI	TTTAAA	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	213, 339
EarI	CTCTTC	2 cut(s)	213, 339
EciI	GGCGGA	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	2 cut(s)	840, 883
EcoNI	CCTNNNNNAGG	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRII	CCWGG	1 cut(s)	934
FaeI	CATG	7 cut(s)	28, 200, 282, 313, 571, 850, 934
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	7 cut(s)	24, 196, 278, 309, 567, 846, 930
FauI	CCCGC	1 cut(s)	662
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	19, 339
FokI	GGATG	3 cut(s)	522, 855, 910
Fsp4HI	GCNGC	2 cut(s)	19, 339
FspBI	CTAG	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	3 cut(s)	22, 566, 651
GluI	GCNGC	2 cut(s)	19, 339
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	624, 939
HhaI	GCGC	3 cut(s)	23, 567, 652
Hin1II	CATG	7 cut(s)	28, 200, 282, 313, 571, 850, 934
Hin6I	GCGC	3 cut(s)	21, 565, 650
HinP1I	GCGC	3 cut(s)	21, 565, 650
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	6 cut(s)	28, 35, 179, 203, 257, 706
HphI	GGTGA	4 cut(s)	295, 496, 506, 529
Hpy166II	GTNNAC	3 cut(s)	6, 403, 922
Hpy188I	TCNGA	5 cut(s)	53, 81, 129, 262, 980
Hpy188III	TCNNGA	7 cut(s)	32, 187, 274, 310, 366, 628, 885
Hpy8I	GTNNAC	3 cut(s)	6, 403, 922
Hpy99I	CGWCG	3 cut(s)	176, 407, 410
HpyAV	CCTTC	3 cut(s)	485, 791, 895
HpyCH4III	ACNGT	1 cut(s)	917
HpyCH4IV	ACGT	3 cut(s)	134, 408, 739
HpyCH4V	TGCA	6 cut(s)	388, 606, 615, 696, 922, 930
HpyF10VI	GCNNNNNNNGC	4 cut(s)	578, 612, 621, 936
HpyF3I	CTNAG	2 cut(s)	451, 755
HpySE526I	ACGT	3 cut(s)	134, 408, 739
Hsp92II	CATG	7 cut(s)	28, 200, 282, 313, 571, 850, 934
HspAI	GCGC	3 cut(s)	21, 565, 650
Kpn2I	TCCGGA	1 cut(s)	31
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	124, 368, 877
LmnI	GCTCC	2 cut(s)	751, 759
Lsp1109I	GCAGC	2 cut(s)	5, 325
LweI	GCATC	1 cut(s)	877
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	3 cut(s)	134, 408, 739
MaeIII	GTNAC	5 cut(s)	222, 494, 521, 535, 905
MalI	GATC	3 cut(s)	126, 370, 879
MboI	GATC	3 cut(s)	124, 368, 877
MboII	GAAGA	4 cut(s)	200, 275, 356, 361
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	2 cut(s)	43, 314
MlyI	GAGTC	3 cut(s)	173, 212, 715
MroI	TCCGGA	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	357, 734
MslI	CAYNNNNRTG	3 cut(s)	308, 492, 851
MspA1I	CMGCKG	1 cut(s)	118
MspR9I	CCNGG	4 cut(s)	428, 685, 873, 936
Mva1269I	GAATGC	1 cut(s)	762
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	2 cut(s)	118, 188
MwoI	GCNNNNNNNGC	4 cut(s)	578, 612, 621, 936
NaeI	GCCGGC	1 cut(s)	654
NciI	CCSGG	3 cut(s)	428, 685, 873
NdeII	GATC	3 cut(s)	124, 368, 877
NgoMIV	GCCGGC	1 cut(s)	652
NlaIII	CATG	7 cut(s)	28, 200, 282, 313, 571, 850, 934
NlaIV	GGNNCC	3 cut(s)	194, 370, 956
NmuCI	GTSAC	3 cut(s)	222, 494, 535
NruI	TCGCGA	1 cut(s)	188
NsbI	TGCGCA	1 cut(s)	566
NspI	RCATGY	1 cut(s)	934
OliI	CACNNNNGTG	1 cut(s)	492
PaeI	GCATGC	1 cut(s)	934
PagI	TCATGA	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	624
PctI	GAATGC	1 cut(s)	762
PdiI	GCCGGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	28, 35, 257
PflFI	GACNNNGTC	2 cut(s)	182, 398
PfoI	TCCNGGA	2 cut(s)	426, 871
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	20, 340
PleI	GAGTC	3 cut(s)	173, 211, 714
PpsI	GAGTC	3 cut(s)	173, 211, 714
Psp1406I	AACGTT	2 cut(s)	134, 739
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	3 cut(s)	194, 370, 956
PspPI	GGNCC	2 cut(s)	321, 938
PstNI	CAGNNNCTG	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	368
PsyI	GACNNNGTC	2 cut(s)	182, 398
RruI	TCGCGA	1 cut(s)	188
RsaI	GTAC	5 cut(s)	5, 284, 296, 482, 593
RsaNI	GTAC	5 cut(s)	4, 283, 295, 481, 592
RseI	CAYNNNNRTG	3 cut(s)	308, 492, 851
SacII	CCGCGG	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	357, 734
SatI	GCNGC	2 cut(s)	19, 339
Sau3AI	GATC	3 cut(s)	124, 368, 877
Sau96I	GGNCC	2 cut(s)	321, 938
SchI	GAGTC	3 cut(s)	173, 212, 715
ScrFI	CCNGG	4 cut(s)	428, 685, 873, 936
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	1 cut(s)	877
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	321
SmiMI	CAYNNNNRTG	3 cut(s)	308, 492, 851
SphI	GCATGC	1 cut(s)	934
Sse9I	AATT	2 cut(s)	43, 314
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	4 cut(s)	116, 118, 456, 669
SspMI	CTAG	1 cut(s)	392
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	4 cut(s)	426, 683, 871, 934
TaaI	ACNGT	1 cut(s)	917
TaiI	ACGT	3 cut(s)	137, 411, 742
TaqI	TCGA	4 cut(s)	38, 402, 577, 744
TaqII	GACCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	43, 314
TatI	WGTACW	2 cut(s)	3, 591
TfiI	GAWTC	3 cut(s)	28, 35, 257
Tru1I	TTAA	2 cut(s)	357, 734
Tru9I	TTAA	2 cut(s)	357, 734
TscAI	CASTG	1 cut(s)	929
TseFI	GTSAC	3 cut(s)	222, 494, 535
TseI	GCWGC	2 cut(s)	18, 338
Tsp45I	GTSAC	3 cut(s)	222, 494, 535
TspDTI	ATGAA	2 cut(s)	326, 914
TspRI	CASTG	1 cut(s)	929
Tth111I	GACNNNGTC	2 cut(s)	182, 398
VneI	GTGCAC	1 cut(s)	920
VpaK11BI	GGWCC	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	637
XceI	RCATGY	1 cut(s)	934
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.