pycom17g05810

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014326
Physical Location & Seq
Forward (+)
4099510 .. 4101099
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGCGGTTTCGATAACGGCTCTCACGTCGTCCTTATCCTCTCTCTCGTTTTCCTCCCACGTAGCTCAGAAACCCAGCATTGTGTCGTTTCCCGGCTCCAAATCAGTGTCTGTTTCGCACGTGTGCGGAGCCCCCACACATGCCCCTCGTCTGGTGGTGGCTTCCGTCGCGGCAGCTCCTCCAACGGAAGTGGTGGAGACTGAAAACCTCAAGAAATACGTGAAATCGAGGCTTCCCGGCGGGTTTGCGGCTCAGACAATCATCGGCACCGGTCGTCGGAAATGTGCGATTGCTCGTGTTGTACTCCAGGAGGGCAGCGGAAAAGTTATCATCAACTATCGCGACGCCAAGGAATATCTGCAAGGCAACCCGTTGTGGCTACAGTACATAAGAGTACCGTTGGTTACTTTAGGATACGAAAGTGGGTACGATGTGTTTGTCAAGGCTCATGGTGGTGGCCTTTCTGGTCAGGCGCAGGCGATATCCCTTGGCATTGCTCGAGCTTTGCTAAAGGTCAGCGAAGACCATAGAAGACCTCTCAGAAAGGAAGGGCTGCTGACCAGAGACGCCAGAGTAGTTGAAAGGAAGAAGCCTGGTCTCAAGAAAGCTCGCAAAGCCCCTCAGTTTTCAAAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

213

Amino Acids

22.77

Weight (kDa)

10.42

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 91 - 212 2.6e-42 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014326)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74970
fragaria_vesca FvH4_5g26680
malus_domestica MD09G1065100.v1.1 MD17G1058000.v1.1
prunus_persica Prupe.4G129500_v2.0.a1
pyrus_communis pycom111g05500 pycom17g05810
rosa_chinensis RchiOBHm_Chr7g0217571
rosa_laevigata RLG00000002460
rosa_multiflora Rmu_sc0006161.1_g000004
rosa_roxburghii Rroxscaffold_3G00241860
rosa_rugosa Rorug07G0170300
rosa_samantha Rh7AG309900 Rh7BG301100 Rh7CG329100 Rh7DG309600
rosa_wichuraiana Rw7G026290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 2 cut(s) 170, 342
AciI CCGC 6 cut(s) 5, 126, 170, 240, 248, 318
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 2 cut(s) 345, 567
AfaI GTAC 4 cut(s) 303, 386, 396, 428
AfiI CCNNNNNNNGG 2 cut(s) 151, 276
AflIII ACRYGT 1 cut(s) 120
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 2 cut(s) 581, 630
AjiI CACGTC 1 cut(s) 27
AjnI CCWGG 2 cut(s) 306, 592
AluBI AGCT 4 cut(s) 65, 176, 503, 608
AluI AGCT 4 cut(s) 65, 176, 503, 608
Alw26I GTCTC 3 cut(s) 191, 558, 602
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 3 cut(s) 173, 315, 553
AsiGI ACCGGT 1 cut(s) 269
AspLEI GCGC 1 cut(s) 475
AsuC2I CCSGG 2 cut(s) 93, 237
AvaI CYCGRG 1 cut(s) 498
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 133
BauI CACGAG 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 528, 538
BbvI GCAGC 3 cut(s) 185, 327, 540
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 308, 594
BciVI GTATCC 1 cut(s) 407
BcnI CCSGG 2 cut(s) 93, 237
BcoDI GTCTC 3 cut(s) 191, 558, 602
BfmI CTRYAG 1 cut(s) 380
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 5 cut(s) 171, 174, 249, 316, 554
BlsI GCNGC 5 cut(s) 172, 175, 250, 317, 555
Bme1390I CCNGG 4 cut(s) 93, 237, 308, 594
BmeT110I CYCGRG 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 27
BmiI GGNNCC 3 cut(s) 97, 130, 268
BmrFI CCNGG 4 cut(s) 93, 237, 308, 594
BpiI GAAGAC 2 cut(s) 528, 538
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 194, 584
BpuMI CCSGG 2 cut(s) 93, 237
BsaAI YACGTR 3 cut(s) 61, 121, 220
BsaHI GRCGYC 2 cut(s) 345, 567
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 348, 487
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 276
Bse118I RCCGGY 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 492
BseBI CCWGG 2 cut(s) 308, 594
BseDI CCNNGG 2 cut(s) 348, 487
BseLI CCNNNNNNNGG 2 cut(s) 151, 276
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 4 cut(s) 80, 266, 553, 635
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 3 cut(s) 185, 327, 540
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 170, 342
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 1 cut(s) 266
BshTI ACCGGT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 3 cut(s) 93, 237, 270
BslI CCNNNNNNNGG 2 cut(s) 151, 276
BsmAI GTCTC 3 cut(s) 191, 558, 602
BsmBI CGTCTC 1 cut(s) 558
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 133
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 6 cut(s) 5, 126, 170, 240, 248, 318
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 4 cut(s) 79, 265, 552, 634
BspFNI CGCG 2 cut(s) 170, 342
BspLI GGNNCC 3 cut(s) 97, 130, 268
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 348, 487
BssNI GRCGYC 2 cut(s) 345, 567
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 348, 487
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 308, 594
Bst4CI ACNGT 2 cut(s) 384, 399
BstACI GRCGYC 2 cut(s) 345, 567
BstBAI YACGTR 3 cut(s) 61, 121, 220
BstC8I GCNNGC 2 cut(s) 477, 610
BstDEI CTNAG 4 cut(s) 66, 252, 539, 621
BstFNI CGCG 2 cut(s) 170, 342
BstHHI GCGC 1 cut(s) 475
BstMAI GTCTC 3 cut(s) 191, 558, 602
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 167, 614
BstNI CCWGG 2 cut(s) 308, 594
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 91, 235, 306, 592
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 2 cut(s) 170, 342
BstV1I GCAGC 3 cut(s) 185, 327, 540
BstV2I GAAGAC 2 cut(s) 528, 538
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 459
BtrI CACGTC 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 111
BtuMI TCGCGA 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 477, 610
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 269
CseI GACGC 2 cut(s) 353, 575
Csp6I GTAC 4 cut(s) 302, 385, 395, 427
CspAI ACCGGT 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 2 cut(s) 140, 449
CviQI GTAC 4 cut(s) 302, 385, 395, 427
DdeI CTNAG 4 cut(s) 66, 252, 539, 621
Eco130I CCWWGG 2 cut(s) 348, 487
Eco24I GRGCYC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 602
Eco32I GATATC 1 cut(s) 483
Eco72I CACGTG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 306, 592
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 2 cut(s) 348, 487
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 348, 487
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 2 cut(s) 143, 452
FaiI YATR 4 cut(s) 141, 389, 450, 528
FatI CATG 2 cut(s) 139, 448
FauI CCCGC 1 cut(s) 233
Fnu4HI GCNGC 5 cut(s) 171, 174, 249, 316, 554
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 5 cut(s) 171, 174, 249, 316, 554
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 171, 174, 249, 316, 554
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 459
HapII CCGG 3 cut(s) 93, 237, 270
HgaI GACGC 2 cut(s) 353, 575
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 2 cut(s) 345, 567
Hin1II CATG 2 cut(s) 143, 452
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HpaII CCGG 3 cut(s) 93, 237, 270
Hpy188I TCNGA 4 cut(s) 69, 255, 279, 542
Hpy188III TCNNGA 3 cut(s) 211, 341, 601
Hpy99I CGWCG 4 cut(s) 31, 170, 279, 347
HpyAV CCTTC 1 cut(s) 542
HpyCH4III ACNGT 2 cut(s) 384, 399
HpyCH4IV ACGT 4 cut(s) 26, 60, 120, 219
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 614
HpyF3I CTNAG 4 cut(s) 66, 252, 539, 621
HpySE526I ACGT 4 cut(s) 26, 60, 120, 219
Hsp92I GRCGYC 2 cut(s) 345, 567
Hsp92II CATG 2 cut(s) 143, 452
HspAI GCGC 1 cut(s) 473
LmnI GCTCC 3 cut(s) 101, 128, 181
Lsp1109I GCAGC 3 cut(s) 185, 327, 540
MaeII ACGT 4 cut(s) 26, 60, 120, 219
MaeIII GTNAC 1 cut(s) 403
MboII GAAGA 3 cut(s) 533, 543, 598
MhlI GDGCHC 1 cut(s) 133
MmeI TCCRAC 2 cut(s) 206, 257
MnlI CCTC 9 cut(s) 49, 64, 156, 189, 218, 222, 304, 546, 630
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 3 cut(s) 93, 237, 270
MspR9I CCNGG 4 cut(s) 93, 237, 308, 594
MvaI CCWGG 2 cut(s) 308, 594
MvnI CGCG 2 cut(s) 170, 342
MwoI GCNNNNNNNGC 2 cut(s) 167, 614
NciI CCSGG 2 cut(s) 93, 237
NlaIII CATG 2 cut(s) 143, 452
NlaIV GGNNCC 3 cut(s) 97, 130, 268
NruI TCGCGA 1 cut(s) 342
NspI RCATGY 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 5 cut(s) 172, 175, 250, 317, 555
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
Ppu21I YACGTR 3 cut(s) 61, 121, 220
Psp6I CCWGG 2 cut(s) 306, 592
PspCI CACGTG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 306, 592
PspN4I GGNNCC 3 cut(s) 97, 130, 268
PspXI VCTCGAGB 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 110
RruI TCGCGA 1 cut(s) 342
RsaI GTAC 4 cut(s) 303, 386, 396, 428
RsaNI GTAC 4 cut(s) 302, 385, 395, 427
RseI CAYNNNNRTG 1 cut(s) 453
SatI GCNGC 5 cut(s) 171, 174, 249, 316, 554
ScrFI CCNGG 4 cut(s) 93, 237, 308, 594
SduI GDGCHC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 498
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 209, 498, 599
SmoI CTYRAG 3 cut(s) 209, 498, 599
SsiI CCGC 6 cut(s) 5, 126, 170, 240, 248, 318
StyD4I CCNGG 4 cut(s) 91, 235, 306, 592
StyI CCWWGG 2 cut(s) 348, 487
TaaI ACNGT 2 cut(s) 384, 399
TaiI ACGT 4 cut(s) 29, 63, 123, 222
TaqI TCGA 3 cut(s) 11, 227, 499
TatI WGTACW 2 cut(s) 301, 384
TauI GCSGC 2 cut(s) 173, 251
TscAI CASTG 1 cut(s) 111
TseI GCWGC 3 cut(s) 173, 315, 553
TspGWI ACGGA 2 cut(s) 154, 200
TspRI CASTG 1 cut(s) 111
XceI RCATGY 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.