Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007170

Physical Location & Seq

Genomic Coordinates Reverse (-)

5066843 .. 5070234

Gene Structure 3392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAAGCAAACTAGAAGAAGATGATGACCATGAGCCAGGTCCAGTTCCTCCACTGAGATTGGACAGATTTGGCTTCTTAAAGCCAGAAATTTCACCTGAAGGTTTAACCAAGAGCAGGTCAACCCTTGAATATGATAGAGAGGAAAGAAGAGTTAGAAAATGGAGGAAGATGATTGGGGTGGGAGGGAGTGATTGGAAACATTATATTAGGAGAAAACCTCACGTTGTTAAAAGGAGAATAAGGAAAGGAATTCCTGATTGTTTAAGAGGTCTCGTTTGGCAGTTGATCTCTGGAAGTCGGGATCTGTTGCTGATGAACCCTGGGGTTTACGAGCAATTAGTGATTTATGAGACGTCAGCTTCAGAGCTGGATATAATTCGAGATATTTCGCGAACCTTCCCTTCACATGTTTTCTTCCAGCAGAGACACGGCCCTGGTCAAAGGTCCCTCTACAATGTTTTGAAGGCATACTCCGTCTTTGACAGAGAAGTTGGATATGTTCAGGGAATGGGATTTCTGGCTGGTCTGTTACTTCTTTATATGAGTGAAGAGGATGCATTTTGGTTATTAGTTGCGTTACTAAAAGGAGCAGTTCATGCACCAATGGAAGGTTTATATCAGGTAGGGCTACCACTGGTACAACAATACCTTTTTCAGTTTGACCAGTTAGTAAAGGAGCACTTGCCAAAGCTGGGAGAGCATTTTACTCAAGAAATGATAAATCCAAGCATGTATGCAAGCCAGTGGTTCATAACCGTTTTCTCCTACTCTTTCCCGTTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTACGAGGGTGTTAGAATCGTTTTCAAAGTTGGTTTAGCCTTATTAAAGTATTGCCACGACGACTTGATAAAATTACCCTTCGAGAAACTTATTCATGCTTTGCGTAACTTCCCTGACAATGCAATGAATCCGGATACTTTACTTCCATTGGCTTACTCAATCAAGGTATCAAGGGGTTTGGAGGAAACGAGGCAGGAGTACGAGAAGAAGAATGGAAAGGGAGGTCAGTTGCCAGAGAGTCAGAAGCGGTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

358

Amino Acids

41.54

Weight (kDa)

8.6

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	87 - 295	8.9e-61	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	149 - 307	3.3e-46	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02460 AT3G02460 AT3G02460 AT3G02460 AT5G15930
fragaria_vesca	FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750 FvH4_6g45750
malus_domestica	MD09G1080000.v1.1 MD17G1070500.v1.1
prunus_persica	Prupe.3G243700_v2.0.a1
pyrus_communis	pycom09g00670 pycom17g07040
rosa_chinensis	RchiOBHm_Chr2g0163941
rosa_laevigata	RLG00000021427
rosa_multiflora	Rmu_sc0006491.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086910
rosa_rugosa	Rorug02G0505100
rosa_samantha	Rh2AG573700 Rh2BG584400 Rh2CG555300 Rh2DG593800
rosa_wichuraiana	Rw2G047440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	1 cut(s)	394
AccIII	TCCGGA	1 cut(s)	946
AciI	CCGC	1 cut(s)	1063
AclWI	GGATC	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	90, 252, 798
AcuI	CTGAAG	2 cut(s)	120, 348
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	2 cut(s)	642, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	117, 611, 695
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	3 cut(s)	131, 466, 841
AjnI	CCWGG	3 cut(s)	37, 322, 436
AluBI	AGCT	3 cut(s)	362, 370, 694
AluI	AGCT	3 cut(s)	362, 370, 694
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	3 cut(s)	278, 347, 421
AlwI	GGATC	1 cut(s)	312
Aor13HI	TCCGGA	1 cut(s)	946
AoxI	GGCC	1 cut(s)	433
ApoI	RAATTY	3 cut(s)	90, 252, 798
AspS9I	GGNCC	3 cut(s)	41, 434, 447
AsuHPI	GGTGA	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	796
AvaII	GGWCC	2 cut(s)	41, 447
Bbv12I	GWGCWC	1 cut(s)	684
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	3 cut(s)	39, 324, 438
BciVI	GTATCC	1 cut(s)	943
BcoDI	GTCTC	3 cut(s)	278, 347, 421
BfaI	CTAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	943
Bme1390I	CCNGG	3 cut(s)	39, 324, 438
Bme18I	GGWCC	2 cut(s)	41, 447
BmgT120I	GGNCC	3 cut(s)	41, 434, 447
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	3 cut(s)	39, 324, 438
BmsI	GCATC	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
Bpu14I	TTCGAA	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	322, 323, 436
BsaWI	WCCGGW	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 611, 695
Bse1I	ACTGG	4 cut(s)	44, 642, 667, 745
Bse3DI	GCAATG	1 cut(s)	945
BseAI	TCCGGA	1 cut(s)	946
BseBI	CCWGG	3 cut(s)	39, 324, 438
BseDI	CCNNGG	3 cut(s)	322, 323, 436
BseGI	GGATG	2 cut(s)	562, 811
BseLI	CCNNNNNNNGG	3 cut(s)	117, 611, 695
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	4 cut(s)	44, 642, 667, 745
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	684
BsiSI	CCGG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	117, 611, 695
BsmAI	GTCTC	3 cut(s)	278, 347, 421
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	435
Bso31I	GGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	796
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp13I	TCCGGA	1 cut(s)	946
Bsp143I	GATC	2 cut(s)	288, 304
Bsp68I	TCGCGA	1 cut(s)	394
BspACI	CCGC	1 cut(s)	1063
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	946
BspFNI	CGCG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	449
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	796
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	945
BsrI	ACTGG	4 cut(s)	44, 642, 667, 745
BssECI	CCNNGG	3 cut(s)	322, 323, 436
BssMI	GATC	2 cut(s)	288, 304
BssNI	GRCGYC	1 cut(s)	356
Bst2UI	CCWGG	3 cut(s)	39, 324, 438
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	3 cut(s)	145, 546, 798
BstACI	GRCGYC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	742
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	562, 811
BstFNI	CGCG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	291, 307
BstMAI	GTCTC	3 cut(s)	278, 347, 421
BstMBI	GATC	2 cut(s)	288, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 700
BstNI	CCWGG	3 cut(s)	39, 324, 438
BstNSI	RCATGY	2 cut(s)	413, 736
BstSCI	CCNGG	3 cut(s)	37, 322, 436
BstUI	CGCG	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	562, 811
BtsIMutI	CAGTG	3 cut(s)	53, 635, 752
BtuMI	TCGCGA	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	41, 434, 447
Csp6I	GTAC	2 cut(s)	641, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	5 cut(s)	32, 410, 599, 733, 911
CviQI	GTAC	2 cut(s)	641, 1015
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	2 cut(s)	290, 306
DpnII	GATC	2 cut(s)	288, 304
Eam1104I	CTCTTC	3 cut(s)	145, 546, 798
EarI	CTCTTC	3 cut(s)	145, 546, 798
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	41, 447
Eco57I	CTGAAG	2 cut(s)	120, 348
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	37, 322, 436
EcoT22I	ATGCAT	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	5 cut(s)	35, 413, 602, 736, 914
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	5 cut(s)	31, 409, 598, 732, 910
FokI	GGATG	2 cut(s)	569, 818
FspBI	CTAG	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	698
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	1 cut(s)	947
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	35, 413, 602, 736, 914
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	831, 943, 1054
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	2 cut(s)	123, 331
Hpy188I	TCNGA	2 cut(s)	367, 1059
Hpy188III	TCNNGA	8 cut(s)	257, 294, 302, 383, 393, 713, 898, 947
Hpy8I	GTNNAC	2 cut(s)	123, 331
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	6 cut(s)	95, 409, 414, 460, 605, 904
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	2 cut(s)	225, 356
HpyCH4V	TGCA	4 cut(s)	560, 602, 740, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 700
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	225, 356
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	35, 413, 602, 736, 914
Kpn2I	TCCGGA	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	288, 304
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	2 cut(s)	590, 679
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	225, 356
MaeIII	GTNAC	3 cut(s)	531, 579, 920
MalI	GATC	2 cut(s)	290, 306
MboI	GATC	2 cut(s)	288, 304
MboII	GAAGA	9 cut(s)	29, 32, 162, 181, 409, 563, 785, 1033, 1036
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	6 cut(s)	90, 252, 338, 378, 798, 887
MlyI	GAGTC	1 cut(s)	1063
MmeI	TCCRAC	2 cut(s)	475, 1047
Mph1103I	ATGCAT	1 cut(s)	562
MroI	TCCGGA	1 cut(s)	946
MseI	TTAA	5 cut(s)	80, 107, 231, 266, 860
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	3 cut(s)	39, 324, 438
MvaI	CCWGG	3 cut(s)	39, 324, 438
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	599, 700
NdeII	GATC	2 cut(s)	288, 304
NlaIII	CATG	5 cut(s)	35, 413, 602, 736, 914
NlaIV	GGNNCC	1 cut(s)	449
NruI	TCGCGA	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	2 cut(s)	413, 736
NspV	TTCGAA	1 cut(s)	796
PasI	CCCWGGG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	831, 943
PleI	GAGTC	1 cut(s)	1062
PpsI	GAGTC	1 cut(s)	1062
PpuMI	RGGWCCY	1 cut(s)	447
PscI	ACATGT	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	3 cut(s)	37, 322, 436
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	3 cut(s)	37, 322, 436
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	3 cut(s)	41, 434, 447
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	304
RruI	TCGCGA	1 cut(s)	394
RsaI	GTAC	2 cut(s)	642, 1016
RsaNI	GTAC	2 cut(s)	641, 1015
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	5 cut(s)	80, 107, 231, 266, 860
Sau3AI	GATC	2 cut(s)	288, 304
Sau96I	GGNCC	3 cut(s)	41, 434, 447
SchI	GAGTC	1 cut(s)	1063
ScrFI	CCNGG	3 cut(s)	39, 324, 438
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	547
SfuI	TTCGAA	1 cut(s)	796
SinI	GGWCC	2 cut(s)	41, 447
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
Sse9I	AATT	6 cut(s)	90, 252, 338, 378, 798, 887
SsiI	CCGC	1 cut(s)	1063
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	37, 322, 436
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	2 cut(s)	228, 359
TaqI	TCGA	3 cut(s)	382, 796, 897
TasI	AATT	6 cut(s)	90, 252, 338, 378, 798, 887
TfiI	GAWTC	2 cut(s)	831, 943
Tru1I	TTAA	5 cut(s)	80, 107, 231, 266, 860
Tru9I	TTAA	5 cut(s)	80, 107, 231, 266, 860
TscAI	CASTG	3 cut(s)	60, 642, 752
TspDTI	ATGAA	5 cut(s)	332, 587, 742, 899, 956
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	3 cut(s)	60, 642, 752
VpaK11BI	GGWCC	2 cut(s)	41, 447
XapI	RAATTY	3 cut(s)	90, 252, 798
XceI	RCATGY	2 cut(s)	413, 736
XspI	CTAG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.