pycom17g07940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016902
Physical Location & Seq
Forward (+)
5945921 .. 5950190
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1317 bp
ATGGCTGTACGATCAGTTCCCACCTTAAGGCGAACAATCCGTTTCAACAAACAGAATGACATTCACCTCCTCCTACACCACAGTGTTTCTGGTCATTCTATAACTTCTGTTAGAACCCATCGCCACACAACATTTGATAACCAGGCTTTCAACGAGTACTCGGAGATAGAATTTCCAATTGCTCTCAAGGAGGAAATTGGCAGTGAATATTTGCACATTGTCGGCATTTGTAATGGGCTGGTATGCTTGGCGGATGATATTGTGCGTTCTGGAAAAAGCTTCATATTATGGAACCCATTTATTCTTAAGTCAGTGATCCTTCCCAGCCCTGGTATTACCTTTCCCATGTATAACAGCAGGTTTGACGCTGCTATTGGATTCGGTTATGATGCTATGACAGCTGACTATAAGGTCGTTGGAGTTGTTACCCCTAACAATGAACTTATGGGTCCAACCATGGCTGAAGTTTATTCACTAGCCACTGCCTCGTGGAACAGTCTTGGTTCGGTTGCTCCTCAGTGTGCAACATATGGAGTGAAAACAGGTCTGAGTGTATGGAGTTACACATTGGGATCGTTGTTGTCTGTTTCGGGAGATAGAAAATCTATAGCTCTATTTGTGATGAATACCGATTCTAAAGATTTTTATCTTGAAATATGGTTGATTAGTCTCGGTCCACAGAGTCCAGAAAAACTTTTTCCTCGGGCGTTATGTTTTCTTTACATCGAGAGCAATATATCAAAGCCTGAACTTGTTTCCCTAAACCTTGTGAGCAAACAAATGAAAAGTCTTGAGATCTGTGGACCATATTTATGTCATGAAAGAAACGCGCAACCGAGTTTCCCTATTTTTTCATCGGTTTTTCTCCGAGGTTTCGGTCTGAATCTAATGGGCGGTGAAAATAGGTGGCAAGGCATCGCTTTACCTCCAGTAAATACAGAGATGGAAGAGGAGCAATGGAGGAACTTCAACAACTCAGTGAATGCAGTTTCTTTAGGTTTTGTAGCAACTGCTATCCTCATCTCAATGTTTCTCGTCATGGCTATTTTTGAGAGATTTTTCAGGCCCAGATCATCACAGCTGACCACTTCAGCTCGGACTGCTGCTACTACTCATTTGGATCTTCAGGCACAGATTACCAACAATGATTCCAAGCTTGATCGCCACAACTCTCACAAAATGAGAAATTATGCCAGAGAAGTATCTGTGATGATGCCTGGAGAAGATATGCCTACCTTCATTGGACATCCTGCTCCTGCACCGTGCCTGCCAGAGCGCATCGCTTGGCCTCTCCATCAACACAAACCGTGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

48.97

Weight (kDa)

7.22

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 54 - 167 1.8e-06 F-box associated beta propeller domain
FBA_1 PF07734 62 - 185 1.9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016902)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44970
malus_domestica MD09G1091200.v1.1 MD17G1081100.v1.1
prunus_persica Prupe.3G233800_v2.0.a1
pyrus_communis pycom17g07940
rosa_chinensis RchiOBHm_Chr2g0162241
rosa_laevigata RLG00000021329
rosa_multiflora Rmu_sc0004020.1_g000026
rosa_roxburghii Rroxscaffold_2G00088230
rosa_rugosa Rorug02G0495300
rosa_samantha Rh2AG561800 Rh2BG574800 Rh2DG584800
rosa_wichuraiana Rw2G046530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 348
AccII CGCG 1 cut(s) 830
AciI CCGC 2 cut(s) 251, 894
AclWI GGATC 3 cut(s) 310, 580, 1128
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 3 cut(s) 483, 1074, 1109
AfaI GTAC 2 cut(s) 9, 158
AfiI CCNNNNNNNGG 2 cut(s) 27, 329
AflII CTTAAG 2 cut(s) 25, 305
AgsI TTSAA 4 cut(s) 46, 151, 653, 970
AjnI CCWGG 3 cut(s) 141, 328, 1216
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 6 cut(s) 279, 401, 611, 1081, 1094, 1156
AluI AGCT 6 cut(s) 279, 401, 611, 1081, 1094, 1156
Alw26I GTCTC 1 cut(s) 674
AlwI GGATC 3 cut(s) 310, 580, 1128
Ama87I CYCGRG 1 cut(s) 702
AoxI GGCC 2 cut(s) 1064, 1286
ApeKI GCWGC 2 cut(s) 368, 1103
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 772, 804
AspLEI GCGC 2 cut(s) 832, 1278
AspS9I GGNCC 4 cut(s) 449, 674, 803, 1065
AsuHPI GGTGA 2 cut(s) 56, 908
AvaI CYCGRG 1 cut(s) 702
AvaII GGWCC 3 cut(s) 449, 674, 803
BauI CACGAG 1 cut(s) 487
BbvI GCAGC 2 cut(s) 355, 1090
BccI CCATC 3 cut(s) 126, 937, 1302
BciT130I CCWGG 3 cut(s) 143, 330, 1218
BcoDI GTCTC 1 cut(s) 674
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 606
BfrI CTTAAG 2 cut(s) 25, 305
BfuAI ACCTGC 1 cut(s) 348
BglII AGATCT 1 cut(s) 795
BisI GCNGC 2 cut(s) 369, 1104
BlsI GCNGC 2 cut(s) 370, 1105
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 3 cut(s) 143, 330, 1218
Bme18I GGWCC 3 cut(s) 449, 674, 803
BmeT110I CYCGRG 1 cut(s) 702
BmgT120I GGNCC 4 cut(s) 449, 674, 803, 1065
BmiI GGNNCC 2 cut(s) 293, 450
BmrFI CCNGG 3 cut(s) 143, 330, 1218
BmsI GCATC 4 cut(s) 379, 924, 1203, 1287
BpmI CTGGAG 2 cut(s) 912, 1239
BpuEI CTTGAG 2 cut(s) 170, 812
BsaBI GATNNNNATC 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 328, 456, 701, 868
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 329
Bse1I ACTGG 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 962
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 3 cut(s) 143, 330, 1218
BseDI CCNNGG 4 cut(s) 328, 456, 701, 868
BseGI GGATG 2 cut(s) 259, 1246
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 2 cut(s) 27, 329
BseMI GCAATG 1 cut(s) 962
BseMII CTCAG 3 cut(s) 530, 539, 990
BseNI ACTGG 1 cut(s) 929
BseRI GAGGAG 3 cut(s) 59, 504, 965
BseXI GCAGC 2 cut(s) 355, 1090
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 1242
Bsh1236I CGCG 1 cut(s) 830
BshFI GGCC 2 cut(s) 1066, 1288
BsiHKCI CYCGRG 1 cut(s) 702
BslI CCNNNNNNNGG 2 cut(s) 27, 329
BsmAI GTCTC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 2 cut(s) 1066, 1288
BsoBI CYCGRG 1 cut(s) 702
Bsp143I GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 2 cut(s) 251, 894
BspANI GGCC 2 cut(s) 1066, 1288
BspCNI CTCAG 3 cut(s) 529, 540, 989
BspFNI CGCG 1 cut(s) 830
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 2 cut(s) 293, 450
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 3 cut(s) 310, 580, 1128
BspTI CTTAAG 2 cut(s) 25, 305
BsrDI GCAATG 1 cut(s) 962
BsrI ACTGG 1 cut(s) 929
BssECI CCNNGG 4 cut(s) 328, 456, 701, 868
BssMI GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
BssSI CACGAG 1 cut(s) 487
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 487
Bst2UI CCWGG 3 cut(s) 143, 330, 1218
Bst4CI ACNGT 4 cut(s) 83, 497, 1263, 1308
Bst6I CTCTTC 1 cut(s) 942
BstAFI CTTAAG 2 cut(s) 25, 305
BstC8I GCNNGC 1 cut(s) 1268
BstDEI CTNAG 3 cut(s) 516, 548, 976
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 259, 1246
BstFNI CGCG 1 cut(s) 830
BstHHI GCGC 2 cut(s) 832, 1278
BstKTI GATC 7 cut(s) 14, 318, 575, 798, 1073, 1123, 1162
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
BstMWI GCNNNNNNNGC 2 cut(s) 398, 1100
BstNI CCWGG 3 cut(s) 143, 330, 1218
BstSCI CCNGG 3 cut(s) 141, 328, 1216
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 1 cut(s) 830
BstV1I GCAGC 2 cut(s) 355, 1090
BstX2I RGATCY 2 cut(s) 795, 1120
BstYI RGATCY 2 cut(s) 795, 1120
BsuRI GGCC 2 cut(s) 1066, 1288
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 3 cut(s) 104, 901, 1264
BtsCI GGATG 2 cut(s) 259, 1246
BtsI GCAGTG 2 cut(s) 208, 480
BtsIMutI CAGTG 6 cut(s) 88, 208, 318, 480, 524, 984
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 1268
CciI TCATGA 1 cut(s) 817
CfoI GCGC 2 cut(s) 832, 1278
Cfr13I GGNCC 4 cut(s) 449, 674, 803, 1065
CseI GACGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 8, 157
CviAII CATG 4 cut(s) 346, 457, 818, 1039
CviQI GTAC 2 cut(s) 8, 157
DdeI CTNAG 3 cut(s) 516, 548, 976
DpnI GATC 7 cut(s) 13, 317, 574, 797, 1072, 1122, 1161
DpnII GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 449, 674, 803
Eco57I CTGAAG 3 cut(s) 483, 1074, 1109
Eco88I CYCGRG 1 cut(s) 702
EcoRII CCWGG 3 cut(s) 141, 328, 1216
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 4 cut(s) 349, 460, 821, 1042
FatI CATG 4 cut(s) 345, 456, 817, 1038
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 369, 1104
FokI GGATG 2 cut(s) 266, 1233
Fsp4HI GCNGC 2 cut(s) 369, 1104
FspBI CTAG 1 cut(s) 476
GlaI GCGC 2 cut(s) 831, 1277
GluI GCNGC 2 cut(s) 369, 1104
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 2 cut(s) 912, 1239
HaeIII GGCC 2 cut(s) 1066, 1288
HgaI GACGC 1 cut(s) 374
HhaI GCGC 2 cut(s) 832, 1278
Hin1II CATG 4 cut(s) 349, 460, 821, 1042
Hin6I GCGC 2 cut(s) 830, 1276
HinP1I GCGC 2 cut(s) 830, 1276
HindIII AAGCTT 2 cut(s) 277, 1154
HinfI GANTC 5 cut(s) 378, 632, 682, 883, 1148
HphI GGTGA 2 cut(s) 56, 908
Hpy166II GTNNAC 2 cut(s) 677, 803
Hpy188I TCNGA 5 cut(s) 163, 549, 869, 882, 1098
Hpy188III TCNNGA 7 cut(s) 270, 591, 650, 686, 727, 791, 818
Hpy8I GTNNAC 2 cut(s) 677, 803
HpyAV CCTTC 2 cut(s) 329, 1246
HpyCH4III ACNGT 4 cut(s) 83, 497, 1263, 1308
HpyCH4V TGCA 4 cut(s) 214, 524, 986, 1259
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 1100
HpyF3I CTNAG 3 cut(s) 516, 548, 976
Hsp92II CATG 4 cut(s) 349, 460, 821, 1042
HspAI GCGC 2 cut(s) 830, 1276
Kzo9I GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
LmnI GCTCC 3 cut(s) 517, 952, 1258
Lsp1109I GCAGC 2 cut(s) 355, 1090
LweI GCATC 4 cut(s) 379, 924, 1203, 1287
MaeI CTAG 1 cut(s) 476
MaeIII GTNAC 2 cut(s) 424, 560
MalI GATC 7 cut(s) 13, 317, 574, 797, 1072, 1122, 1161
MboI GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
MboII GAAGA 3 cut(s) 959, 1115, 1235
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 2 cut(s) 795, 1120
MluCI AATT 4 cut(s) 170, 177, 195, 1186
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 2 cut(s) 397, 476
MseI TTAA 2 cut(s) 26, 306
MslI CAYNNNNRTG 3 cut(s) 81, 811, 1025
MspA1I CMGCKG 2 cut(s) 401, 1081
MspCI CTTAAG 2 cut(s) 25, 305
MspR9I CCNGG 3 cut(s) 143, 330, 1218
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 988
MvaI CCWGG 3 cut(s) 143, 330, 1218
MvnI CGCG 1 cut(s) 830
MwoI GCNNNNNNNGC 2 cut(s) 398, 1100
NcoI CCATGG 1 cut(s) 456
NdeI CATATG 1 cut(s) 529
NdeII GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
NlaIII CATG 4 cut(s) 349, 460, 821, 1042
NlaIV GGNNCC 2 cut(s) 293, 450
OliI CACNNNNGTG 1 cut(s) 81
PagI TCATGA 1 cut(s) 817
PctI GAATGC 1 cut(s) 988
PfeI GAWTC 4 cut(s) 378, 632, 883, 1148
PkrI GCNGC 2 cut(s) 370, 1105
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
Psp6I CCWGG 3 cut(s) 141, 328, 1216
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 3 cut(s) 141, 328, 1216
PspN4I GGNNCC 2 cut(s) 293, 450
PspPI GGNCC 4 cut(s) 449, 674, 803, 1065
PsrI GAACNNNNNNTAC 1 cut(s) 32
PsuI RGATCY 2 cut(s) 795, 1120
PvuII CAGCTG 2 cut(s) 401, 1081
RsaI GTAC 2 cut(s) 9, 158
RsaNI GTAC 2 cut(s) 8, 157
RseI CAYNNNNRTG 3 cut(s) 81, 811, 1025
SaqAI TTAA 2 cut(s) 26, 306
SatI GCNGC 2 cut(s) 369, 1104
Sau3AI GATC 7 cut(s) 11, 315, 572, 795, 1070, 1120, 1159
Sau96I GGNCC 4 cut(s) 449, 674, 803, 1065
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 3 cut(s) 143, 330, 1218
SfaNI GCATC 4 cut(s) 379, 924, 1203, 1287
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 3 cut(s) 449, 674, 803
SmiMI CAYNNNNRTG 3 cut(s) 81, 811, 1025
SmlI CTYRAG 4 cut(s) 25, 185, 305, 791
SmoI CTYRAG 4 cut(s) 25, 185, 305, 791
Sse9I AATT 4 cut(s) 170, 177, 195, 1186
SsiI CCGC 2 cut(s) 251, 894
SspI AATATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 3 cut(s) 141, 328, 1216
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 4 cut(s) 83, 497, 1263, 1308
TaqI TCGA 1 cut(s) 726
TaqII GACCGA 2 cut(s) 662, 866
TasI AATT 4 cut(s) 170, 177, 195, 1186
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 4 cut(s) 378, 632, 883, 1148
Tru1I TTAA 2 cut(s) 26, 306
Tru9I TTAA 2 cut(s) 26, 306
TscAI CASTG 6 cut(s) 88, 208, 318, 487, 524, 984
TseI GCWGC 2 cut(s) 368, 1103
TspDTI ATGAA 7 cut(s) 271, 453, 638, 797, 834, 843, 1228
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 6 cut(s) 88, 208, 318, 487, 524, 984
Vha464I CTTAAG 2 cut(s) 25, 305
VpaK11BI GGWCC 3 cut(s) 449, 674, 803
XapI RAATTY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.