pycom17g08890

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016625
Physical Location & Seq
Forward (+)
6699093 .. 6699872
780 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
ATGCTTTCCACTTTCCCATTTACCCTAAATTGGTCTTCACGTGCCCACAATTACTTCTGTCTCCCAAATTCCCAATCCTTAAATCTCCAAAAATACCCACACACACTCACTACCCTCACTCTCTCCCTCCGCCTTCTAAGCCATGAAAAGAAGACGACGAAAAACAACCAGCAAATCCCAACACCACCGCCATTCTCTCCGCCAATCTGTCTGAACTCAAACCCAGCAGAAACCCAGCAAACCAAAATGTGCTATGTGGGGAAAGCAACAAAGATCTTCATTTTTGTGGTGACAGTGCTGGTGGTACTTGGGCTGGTTTTGGGATTTGGGGTTCTCCGCCACGGCCTCCAAAAATCCCACAAATGCTCCGCCGATTCGGATTCCTGCCGCCCTCTCTCCTCCCCACCAATTCAATTCCCTAACCCCAATTCCGGTTCGAACCAGCCCAGCCCACCAAATTCCGATCCAACTCTGACCCAGCCCAGCCCACCTAACCCCAATTTCAACCCGCCTCCTCCGCCTAACCCTGATTTGACCCCGTCTCCGCCGACATCAATCTCAACCCCGCCTCCTCCAACTCCGCCGGCATCAATTCTAAGCCCACCTCCGCCGACATCAATTCTAAGCCCACCTCCGCCGACATCAATTCCGAGTCCACCTCCGCCTAACCCAACTTCCAATCCGCCATCTTTTCCGCCGCCTCCGCCGGCTACAACGGCGGCGCCGCCATTCAGTCCGCCAAGTGAGGCCCAGGTGACTCCAAGTCCTGCCCGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

260

Amino Acids

27.49

Weight (kDa)

9.4

Isoelectric Point (pI)

80.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016625)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22070
fragaria_vesca FvH4_6g43650
prunus_persica Prupe.3G221700_v2.0.a1
pyrus_communis pycom09g02720 pycom17g08890
rosa_chinensis RchiOBHm_Chr2g0160271
rosa_laevigata RLG00000021209
rosa_multiflora Rmu_sc0000403.1_g000001 Rmu_sc0008269.1_g000005
rosa_roxburghii Rroxscaffold_2G00089890
rosa_rugosa Rorug02G0482500
rosa_samantha Rh2AG548000 Rh2CG532300
rosa_wichuraiana Rw2G045340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 2 cut(s) 67, 457
AcvI CACGTG 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 30, 431
AgsI TTSAA 2 cut(s) 413, 505
AhdI GACNNNNNGTC 1 cut(s) 762
AjnI CCWGG 1 cut(s) 750
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
Alw26I GTCTC 2 cut(s) 65, 546
AlwI GGATC 1 cut(s) 458
AoxI GGCC 2 cut(s) 343, 747
ApoI RAATTY 2 cut(s) 67, 457
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 748
AsuHPI GGTGA 2 cut(s) 301, 766
AsuII TTCGAA 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 721
BbrPI CACGTG 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 27, 158
BccI CCATC 1 cut(s) 694
BceAI ACGGC 2 cut(s) 358, 732
BciT130I CCWGG 1 cut(s) 752
BcoDI GTCTC 2 cut(s) 65, 546
BfoI RGCGCY 1 cut(s) 725
BglII AGATCT 1 cut(s) 273
BisI GCNGC 4 cut(s) 388, 698, 720, 725
BlsI GCNGC 4 cut(s) 389, 699, 721, 726
Bme1390I CCNGG 1 cut(s) 752
BmeRI GACNNNNNGTC 1 cut(s) 762
BmgT120I GGNCC 1 cut(s) 748
BmiI GGNNCC 1 cut(s) 723
BmrFI CCNGG 1 cut(s) 752
BmsI GCATC 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 27, 158
BplI GAGNNNNNCTC 2 cut(s) 643, 675
Bpu14I TTCGAA 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 722
BsaJI CCNNGG 2 cut(s) 340, 750
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 6 cut(s) 350, 380, 526, 553, 556, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 431
Bse118I RCCGGY 2 cut(s) 583, 706
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 2 cut(s) 340, 750
BseLI CCNNNNNNNGG 2 cut(s) 30, 431
BseRI GAGGAG 3 cut(s) 388, 504, 561
BseSI GKGCMC 1 cut(s) 46
BseYI CCCAGC 5 cut(s) 223, 234, 446, 477, 482
BshFI GGCC 2 cut(s) 345, 749
BshNI GGYRCC 1 cut(s) 721
BsiSI CCGG 3 cut(s) 432, 584, 707
BslI CCNNNNNNNGG 2 cut(s) 30, 431
BsmAI GTCTC 2 cut(s) 65, 546
BsmBI CGTCTC 1 cut(s) 546
BsnI GGCC 2 cut(s) 345, 749
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 273, 463
BspANI GGCC 2 cut(s) 345, 749
BspLI GGNNCC 1 cut(s) 723
BspPI GGATC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 721
BsrFI RCCGGY 2 cut(s) 583, 706
BssAI RCCGGY 2 cut(s) 583, 706
BssECI CCNNGG 2 cut(s) 340, 750
BssMI GATC 2 cut(s) 273, 463
BssNI GRCGYC 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 585, 708
BstDEI CTNAG 3 cut(s) 137, 596, 623
BstDSI CCRYGG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 2 cut(s) 276, 466
BstMAI GTCTC 2 cut(s) 65, 546
BstMBI GATC 2 cut(s) 273, 463
BstMWI GCNNNNNNNGC 4 cut(s) 138, 517, 703, 716
BstNI CCWGG 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 46
BstV2I GAAGAC 2 cut(s) 27, 158
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 345, 749
BtgI CCRYGG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 2 cut(s) 585, 708
CfoI GCGC 1 cut(s) 724
Cfr10I RCCGGY 2 cut(s) 583, 706
Cfr13I GGNCC 1 cut(s) 748
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 143
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 3 cut(s) 137, 596, 623
DinI GGCGCC 1 cut(s) 723
DpnI GATC 2 cut(s) 275, 465
DpnII GATC 2 cut(s) 273, 463
DriI GACNNNNNGTC 1 cut(s) 762
Eam1105I GACNNNNNGTC 1 cut(s) 762
Eco72I CACGTG 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 750
EgeI GGCGCC 1 cut(s) 723
EheI GGCGCC 1 cut(s) 723
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 144, 255
FatI CATG 1 cut(s) 142
FauI CCCGC 2 cut(s) 516, 573
Fnu4HI GCNGC 4 cut(s) 388, 698, 720, 725
Fsp4HI GCNGC 4 cut(s) 388, 698, 720, 725
GlaI GCGC 1 cut(s) 723
GluI GCNGC 4 cut(s) 388, 698, 720, 725
GsaI CCCAGC 5 cut(s) 227, 238, 450, 481, 486
HaeII RGCGCY 1 cut(s) 725
HaeIII GGCC 2 cut(s) 345, 749
HapII CCGG 3 cut(s) 432, 584, 707
HhaI GCGC 1 cut(s) 724
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HinfI GANTC 4 cut(s) 374, 380, 652, 757
HpaII CCGG 3 cut(s) 432, 584, 707
HphI GGTGA 2 cut(s) 301, 766
Hpy166II GTNNAC 1 cut(s) 656
Hpy188I TCNGA 5 cut(s) 213, 379, 463, 474, 651
Hpy8I GTNNAC 1 cut(s) 656
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 4 cut(s) 138, 517, 703, 716
HpyF3I CTNAG 3 cut(s) 137, 596, 623
HpySE526I ACGT 1 cut(s) 40
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 722
KasI GGCGCC 1 cut(s) 721
KroI GCCGGC 2 cut(s) 583, 706
KroNI GCCGGC 2 cut(s) 585, 708
Kzo9I GATC 2 cut(s) 273, 463
LmnI GCTCC 1 cut(s) 371
LweI GCATC 1 cut(s) 596
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 2 cut(s) 289, 754
MalI GATC 2 cut(s) 275, 465
MboI GATC 2 cut(s) 273, 463
MboII GAAGA 3 cut(s) 27, 163, 268
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 46
Mly113I GGCGCC 1 cut(s) 722
MlyI GAGTC 2 cut(s) 661, 751
MmeI TCCRAC 2 cut(s) 491, 599
MroNI GCCGGC 2 cut(s) 583, 706
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 3 cut(s) 432, 584, 707
MspR9I CCNGG 1 cut(s) 752
MvaI CCWGG 1 cut(s) 752
MwoI GCNNNNNNNGC 4 cut(s) 138, 517, 703, 716
NaeI GCCGGC 2 cut(s) 585, 708
NarI GGCGCC 1 cut(s) 722
NdeII GATC 2 cut(s) 273, 463
NgoMIV GCCGGC 2 cut(s) 583, 706
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 723
NmuCI GTSAC 2 cut(s) 289, 754
NspV TTCGAA 1 cut(s) 437
PdiI GCCGGC 2 cut(s) 585, 708
PfeI GAWTC 2 cut(s) 374, 380
PflFI GACNNNGTC 1 cut(s) 538
PkrI GCNGC 4 cut(s) 389, 699, 721, 726
PleI GAGTC 2 cut(s) 660, 751
PluTI GGCGCC 1 cut(s) 725
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
PpsI GAGTC 2 cut(s) 660, 751
Ppu21I YACGTR 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 750
PspCI CACGTG 1 cut(s) 41
PspFI CCCAGC 5 cut(s) 223, 234, 446, 477, 482
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 1 cut(s) 723
PspPI GGNCC 1 cut(s) 748
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 538
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 4 cut(s) 388, 698, 720, 725
Sau3AI GATC 2 cut(s) 273, 463
Sau96I GGNCC 1 cut(s) 748
SchI GAGTC 2 cut(s) 661, 751
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 1 cut(s) 46
SetI ASST 6 cut(s) 43, 493, 607, 634, 661, 756
SfaNI GCATC 1 cut(s) 596
SfoI GGCGCC 1 cut(s) 723
SfuI TTCGAA 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 284
SspDI GGCGCC 1 cut(s) 721
StyD4I CCNGG 1 cut(s) 750
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 437
TauI GCSGC 4 cut(s) 390, 700, 722, 727
TfiI GAWTC 2 cut(s) 374, 380
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 289, 754
Tsp45I GTSAC 2 cut(s) 289, 754
TspDTI ATGAA 2 cut(s) 159, 268
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 538
XapI RAATTY 2 cut(s) 67, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.