Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008001

Physical Location & Seq

Genomic Coordinates Forward (+)

8024725 .. 8025709

Gene Structure 985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATTTCTCGAGGGGAAGATGGGACAGATAAAGTTGCTTCTGATGTAGTACAGAAGAAAGAGAGTTCCGATAGTGAAATTAATGTGCCACATCAAACTCCTAATGAAGGGATCTGTCCGTTGCAATCAGATCATAAAGGAACTGCTCAATTTCTAACACCTGAGAAAGCATCACAGGTGCCTGATGGAGTTGTTAGTGCATCACAACCAAATCAAGAAGGAAGTGCTTCCTCTTTAACATCTGAGAAAACCCCACAAACCCCTGAAACCACTGCACTTGCCTTGCGATCTGGTCAAGAAGGAACCACTCCATCTACTACACCTGAGAGAGTGTTAGACGATGGTTATCACTGGAGAAAATATGGCCAGAAACATGTCAAGGGAAATTCATATGTAAGAAGTTACTACAGATGTACGCATCCAAAATGTGAAGTGAAGAGGCAAGTGGAACGTAAACAAAGTGGCCAGATAACAGATACCATATACTTTGGTGAGCATGAACATCCTAAAGTCCAAAGTGTCCCAGCAGCTGTTAGTTTTGTTGTGTCCATTGTTGATGACGAAAGACCAGAAGTGGTTTTAGAAACTGATGGTGAAGATAAATCGTCCAATGCGCATGGCCACACATCTAACCAGATTGAGCCGGTAGATCCCCCACAGCTTTCAAGCGTTGCAGTTACTGAAGCCGTGCAGGGTGTGCTCGCTCAGTCAAATAGAACAAGAGATGTCGATCCTGACCCTAAAAGACAGTATGTTCTTGCAATATCTATTTTGAATTTTCCTGTGCACTGGTATATAACACTTACCTTTTACCCGTGGTTGTTCAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043565 GO:0045893 GO:0045935 GO:0046677 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

278

Amino Acids

30.68

Weight (kDa)

5.58

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	113 - 169	1.6e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04880 AT2G04880
fragaria_vesca	FvH4_6g41210
malus_domestica	MD09G1121600.v1.1 MD17G1112600.v1.1
prunus_persica	Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1 Prupe.3G202000_v2.0.a1
pyrus_communis	pycom09g04600 pycom17g10430
rosa_chinensis	RchiOBHm_Chr2g0156771
rosa_laevigata	RLG00000020940
rosa_multiflora	Rmu_sc0008149.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092740
rosa_rugosa	Rorug02G0456100 Rorug02G0456100
rosa_samantha	Rh2AG521500 Rh2BG535000 Rh2CG506400 Rh2DG544000
rosa_wichuraiana	Rw2G043060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	178
AclWI	GGATC	3 cut(s)	119, 644, 725
AcoI	YGGCCR	3 cut(s)	364, 463, 619
AcsI	RAATTY	2 cut(s)	385, 775
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	2 cut(s)	51, 415
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	666, 775
AluBI	AGCT	2 cut(s)	530, 661
AluI	AGCT	2 cut(s)	530, 661
Alw21I	GWGCWC	2 cut(s)	702, 789
Alw44I	GTGCAC	1 cut(s)	785
AlwI	GGATC	3 cut(s)	119, 644, 725
AlwNI	CAGNNNCTG	2 cut(s)	530, 680
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	3 cut(s)	364, 463, 619
ApaLI	GTGCAC	1 cut(s)	785
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	385, 775
AseI	ATTAAT	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	616
AsuHPI	GGTGA	2 cut(s)	503, 605
AvaI	CYCGRG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	789
BalI	TGGCCA	3 cut(s)	366, 465, 621
BanI	GGYRCC	1 cut(s)	178
Bbv12I	GWGCWC	2 cut(s)	702, 789
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	5 cut(s)	14, 179, 319, 335, 584
BceAI	ACGGC	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	180, 304
BmsI	GCATC	3 cut(s)	179, 209, 427
BpmI	CTGGAG	1 cut(s)	373
BsaBI	GATNNNNATC	2 cut(s)	345, 729
BsaJI	CCNNGG	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	356, 794
Bse8I	GATNNNNATC	2 cut(s)	345, 729
BseDI	CCNNGG	1 cut(s)	815
BseGI	GGATG	2 cut(s)	418, 502
BseJI	GATNNNNATC	2 cut(s)	345, 729
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	4 cut(s)	153, 234, 315, 719
BseNI	ACTGG	2 cut(s)	356, 794
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	1 cut(s)	539
BseYI	CCCAGC	1 cut(s)	523
BsgI	GTGCAG	2 cut(s)	258, 710
BshFI	GGCC	3 cut(s)	366, 465, 621
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	702, 789
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	644
BslFI	GGGAC	2 cut(s)	37, 506
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	37, 506
BsnI	GGCC	3 cut(s)	366, 465, 621
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	702, 789
Bsp143I	GATC	5 cut(s)	111, 130, 287, 649, 730
BspANI	GGCC	3 cut(s)	366, 465, 621
BspCNI	CTCAG	4 cut(s)	154, 235, 316, 718
BspLI	GGNNCC	2 cut(s)	180, 304
BspPI	GGATC	3 cut(s)	119, 644, 725
BspT107I	GGYRCC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	356, 794
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	1 cut(s)	815
BssMI	GATC	5 cut(s)	111, 130, 287, 649, 730
Bst4CI	ACNGT	1 cut(s)	750
Bst6I	CTCTTC	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	4 cut(s)	162, 243, 324, 705
BstDSI	CCRYGG	1 cut(s)	815
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	418, 502
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	5 cut(s)	114, 133, 290, 652, 733
BstMBI	GATC	5 cut(s)	111, 130, 287, 649, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	789
BstV1I	GCAGC	1 cut(s)	539
BstX2I	RGATCY	2 cut(s)	111, 649
BstYI	RGATCY	2 cut(s)	111, 649
BsuRI	GGCC	3 cut(s)	366, 465, 621
BtgI	CCRYGG	1 cut(s)	815
BtsCI	GGATG	2 cut(s)	418, 502
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	270, 349, 787
Cac8I	GCNNGC	1 cut(s)	702
CaiI	CAGNNNCTG	2 cut(s)	530, 680
CfoI	GCGC	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	643
Csp6I	GTAC	2 cut(s)	50, 414
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	3 cut(s)	374, 497, 617
CviJI	RGCY	7 cut(s)	366, 465, 530, 621, 643, 661, 686
CviKI_1	RGCY	7 cut(s)	366, 465, 530, 621, 643, 661, 686
CviQI	GTAC	2 cut(s)	50, 414
DdeI	CTNAG	4 cut(s)	162, 243, 324, 705
DpnI	GATC	5 cut(s)	113, 132, 289, 651, 732
DpnII	GATC	5 cut(s)	111, 130, 287, 649, 730
EaeI	YGGCCR	3 cut(s)	364, 463, 619
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	105
FaeI	CATG	3 cut(s)	377, 500, 620
FaqI	GGGAC	2 cut(s)	37, 506
FatI	CATG	3 cut(s)	373, 496, 616
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	405, 489
Fsp4HI	GCNGC	1 cut(s)	528
FspAI	RTGCGCAY	1 cut(s)	615
FspI	TGCGCA	1 cut(s)	615
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	1 cut(s)	528
GsaI	CCCAGC	1 cut(s)	527
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	366, 465, 621
HapII	CCGG	1 cut(s)	644
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	3 cut(s)	377, 500, 620
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	2 cut(s)	503, 605
Hpy166II	GTNNAC	2 cut(s)	455, 787
Hpy188I	TCNGA	5 cut(s)	43, 70, 130, 244, 827
Hpy188III	TCNNGA	4 cut(s)	9, 215, 296, 734
Hpy8I	GTNNAC	2 cut(s)	455, 787
HpyAV	CCTTC	3 cut(s)	101, 212, 293
HpyCH4III	ACNGT	1 cut(s)	750
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	7 cut(s)	124, 200, 275, 674, 691, 761, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	697
HpyF3I	CTNAG	4 cut(s)	162, 243, 324, 705
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	377, 500, 620
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	5 cut(s)	111, 130, 287, 649, 730
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	3 cut(s)	179, 209, 427
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	401, 676
MalI	GATC	5 cut(s)	113, 132, 289, 651, 732
MboI	GATC	5 cut(s)	111, 130, 287, 649, 730
MboII	GAAGA	4 cut(s)	29, 67, 448, 608
MflI	RGATCY	2 cut(s)	111, 649
MhlI	GDGCHC	2 cut(s)	702, 789
MlsI	TGGCCA	3 cut(s)	366, 465, 621
MluCI	AATT	4 cut(s)	78, 149, 385, 775
MluNI	TGGCCA	3 cut(s)	366, 465, 621
MnlI	CCTC	3 cut(s)	5, 241, 432
Mox20I	TGGCCA	3 cut(s)	366, 465, 621
MroXI	GAANNNNTTC	1 cut(s)	226
MscI	TGGCCA	3 cut(s)	366, 465, 621
MseI	TTAA	2 cut(s)	81, 236
Msp20I	TGGCCA	3 cut(s)	366, 465, 621
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	697
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	5 cut(s)	111, 130, 287, 649, 730
NlaIII	CATG	3 cut(s)	377, 500, 620
NlaIV	GGNNCC	2 cut(s)	180, 304
NsbI	TGCGCA	1 cut(s)	615
NspI	RCATGY	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	9
PciI	ACATGT	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	529
PscI	ACATGT	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	180, 304
PstNI	CAGNNNCTG	2 cut(s)	530, 680
PsuI	RGATCY	2 cut(s)	111, 649
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	51, 415
RsaNI	GTAC	2 cut(s)	50, 414
SaqAI	TTAA	2 cut(s)	81, 236
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	5 cut(s)	111, 130, 287, 649, 730
SduI	GDGCHC	2 cut(s)	702, 789
SetI	ASST	7 cut(s)	163, 180, 325, 454, 532, 663, 809
SfaNI	GCATC	3 cut(s)	179, 209, 427
SfcI	CTRYAG	1 cut(s)	406
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	4 cut(s)	78, 149, 385, 775
TaaI	ACNGT	1 cut(s)	750
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	10, 729
TasI	AATT	4 cut(s)	78, 149, 385, 775
TatI	WGTACW	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	81, 236
Tru9I	TTAA	2 cut(s)	81, 236
TscAI	CASTG	3 cut(s)	277, 356, 794
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	120, 378, 513
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	277, 356, 794
VneI	GTGCAC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	2 cut(s)	385, 775
XceI	RCATGY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.