pycom17g10800

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011444
Physical Location & Seq
Forward (+)
8388973 .. 8391354
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGCAGAAACCACCAGCCCTCACAGCCACCCTAGCCCTCTTTGCCCTCTTCCTCTTCCTCCTATCCTCGTCGTCCCAAGCGCACAACATTACGCACATACTCGACCAGCACCCCTCCCTCTCCACCTTCAACCACTACCTCAGCCTCACCCACCTCGCCACCGAGATCAACCGCCGTCAGACCATCACTGTCCTCGCCCTCGACAATGCCGCCATGTCATCCCTCATTTCCAAAGGACTCTCGGTATACACCATTAAAAATGTGCTCTCCCTCCATGTCCTTGTTGATTACTTTGGCGCAAAGAAACTTCACCAGCTCACCCATGGCACCACCTTGGCTAGCAGCATGTTCCAAGCCACCGGGGTGGCGGCCGGGACCTCTGGGTACGTGAACATAACCAACCTCAAGGGCGGTAAAGTCGGCTTCGGAGCTGAAGACAATGGTGGGACACTCAATTCCTTCTATGTGAAGTCTGTGCTGGAGATGCCATACAACATCTCTGTCTTGCAAATCAGTCAGGCACTAACTTCTGCTGAAGCCGAGGCGCCAACTGCCGGACCAAGCCAGCTGAATCTAACGGCCATCATCTCAAAGCAAGGCTGCAAAGCCTTCGCCGACTTGCTCATCGCTGCCGGAGCCGACTCCACCTTCGAGACCAACATCGACGGCGGCTTGACGGTCTTCTGCCCGACGGACTCCGTCGTCAACGCCTTCCTCCCCAAGTATAAAAATCTAACGGCGTCCCAGAAGGTGTCGCTGCTGCTCTACCACGGTGTCCCCGTCTACCAGTCCCTCCAGGATCTCAAGTCCAACAACGGTCTCGTCAACACGCTCGCCACCGACAAGGCGAAGAAGTTCGAGTTCACGGTTCAGAACGACGGCGAGGTCGTAAGTTTGGAGACGCAGGTGGTGACGGCGAAGATCACGGGGACGGTGATTGATCAGGAGCCGTTGGTGGTTTATAAGGTGAACAAGGTTTTGCAGCCGACGGAACTGTTTAAGGCGACGGTGGCTCCCGCGCCGAAGGAGGTGGCGGCGGGGCCGGCTGATGCGCCGTCGGATGATACGCCGGCGGATCAGACGGCTGATAGTGAGAAGAATGGAGTTGCGGGATTGGACGGTGGGAGATTGGTCTCGGTTATTTTGAGTTTTTGTGTTGGGGTTTTGCTTATGTGA

Protein Analysis

392

Amino Acids

41.32

Weight (kDa)

5.98

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 200 - 329 1.9e-16 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
AarI CACCTGC 1 cut(s) 895
AasI GACNNNNNNGTC 2 cut(s) 701, 884
Acc36I ACCTGC 1 cut(s) 895
AccB1I GGYRCC 2 cut(s) 326, 544
AccI GTMKAC 2 cut(s) 246, 783
AccII CGCG 1 cut(s) 1019
AclWI GGATC 2 cut(s) 807, 1083
AcoI YGGCCR 2 cut(s) 369, 579
AcuI CTGAAG 2 cut(s) 453, 555
AcyI GRCGYC 2 cut(s) 545, 740
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 795
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 3 cut(s) 316, 431, 568
AluI AGCT 3 cut(s) 316, 431, 568
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 4 cut(s) 647, 824, 893, 1138
AlwI GGATC 2 cut(s) 807, 1083
AoxI GGCC 3 cut(s) 369, 579, 1040
ApeKI GCWGC 6 cut(s) 342, 600, 629, 757, 760, 982
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 1 cut(s) 854
AspLEI GCGC 5 cut(s) 82, 299, 547, 1021, 1054
AspS9I GGNCC 3 cut(s) 375, 557, 1040
AsuC2I CCSGG 2 cut(s) 361, 373
AsuHPI GGTGA 6 cut(s) 139, 302, 310, 922, 946, 979
AsuNHI GCTAGC 1 cut(s) 338
AvaII GGWCC 2 cut(s) 375, 557
BanI GGYRCC 2 cut(s) 326, 544
BbsI GAAGAC 2 cut(s) 441, 673
Bbv12I GWGCWC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 140
BbvI GCAGC 6 cut(s) 354, 587, 616, 744, 747, 994
BccI CCATC 2 cut(s) 191, 590
BceAI ACGGC 9 cut(s) 159, 594, 682, 753, 895, 930, 934, 1039, 1098
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 1 cut(s) 797
BclI TGATCA 1 cut(s) 940
BcnI CCSGG 2 cut(s) 361, 373
BcoDI GTCTC 4 cut(s) 647, 824, 893, 1138
BfaI CTAG 2 cut(s) 32, 339
BfoI RGCGCY 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 895
Bme1390I CCNGG 3 cut(s) 361, 373, 797
Bme18I GGWCC 2 cut(s) 375, 557
BmgT120I GGNCC 3 cut(s) 375, 557, 1040
BmiI GGNNCC 7 cut(s) 328, 376, 546, 637, 948, 1014, 1041
BmrFI CCNGG 3 cut(s) 361, 373, 797
BmsI GCATC 2 cut(s) 474, 1039
BmtI GCTAGC 1 cut(s) 342
BpiI GAAGAC 2 cut(s) 441, 673
BpmI CTGGAG 2 cut(s) 500, 779
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 2 cut(s) 389, 788
BpuMI CCSGG 2 cut(s) 361, 373
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 2 cut(s) 545, 740
BsaI GGTCTC 3 cut(s) 647, 824, 1138
BsaJI CCNNGG 5 cut(s) 322, 333, 360, 540, 769
BsaXI ACNNNNNCTCC 2 cut(s) 997, 1027
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse118I RCCGGY 2 cut(s) 1042, 1069
Bse1I ACTGG 1 cut(s) 787
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 5 cut(s) 322, 333, 360, 540, 769
BseGI GGATG 2 cut(s) 218, 1066
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 787
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 6 cut(s) 354, 587, 616, 744, 747, 994
Bsh1236I CGCG 1 cut(s) 1019
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 371, 581, 1042
BshNI GGYRCC 2 cut(s) 326, 544
BsiEI CGRYCG 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 6 cut(s) 360, 372, 555, 633, 1043, 1070
BslFI GGGAC 7 cut(s) 58, 388, 460, 727, 761, 775, 943
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 4 cut(s) 647, 824, 893, 1138
BsmBI CGTCTC 1 cut(s) 893
BsmFI GGGAC 7 cut(s) 58, 388, 460, 727, 761, 775, 943
BsnI GGCC 3 cut(s) 371, 581, 1042
Bso31I GGTCTC 3 cut(s) 647, 824, 1138
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 165, 799, 921, 940, 1075
Bsp19I CCATGG 1 cut(s) 322
BspANI GGCC 3 cut(s) 371, 581, 1042
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 1019
BspLI GGNNCC 7 cut(s) 328, 376, 546, 637, 948, 1014, 1041
BspMI ACCTGC 1 cut(s) 895
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 2 cut(s) 807, 1083
BspT107I GGYRCC 2 cut(s) 326, 544
BspTNI GGTCTC 3 cut(s) 647, 824, 1138
BsrFI RCCGGY 2 cut(s) 1042, 1069
BsrI ACTGG 1 cut(s) 787
BssAI RCCGGY 2 cut(s) 1042, 1069
BssECI CCNNGG 5 cut(s) 322, 333, 360, 540, 769
BssMI GATC 5 cut(s) 165, 799, 921, 940, 1075
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 2 cut(s) 545, 740
BssT1I CCWWGG 2 cut(s) 322, 333
Bst1107I GTATAC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 9 cut(s) 190, 679, 773, 818, 868, 934, 996, 1009, 1121
Bst6I CTCTTC 2 cut(s) 53, 59
BstACI GRCGYC 2 cut(s) 545, 740
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 5 cut(s) 340, 566, 834, 1044, 1071
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 2 cut(s) 322, 769
BstF5I GGATG 2 cut(s) 218, 1066
BstFNI CGCG 1 cut(s) 1019
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 5 cut(s) 82, 299, 547, 1021, 1054
BstKTI GATC 5 cut(s) 168, 802, 924, 943, 1078
BstMAI GTCTC 4 cut(s) 647, 824, 893, 1138
BstMBI GATC 5 cut(s) 165, 799, 921, 940, 1075
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 8 cut(s) 23, 32, 41, 484, 551, 635, 1010, 1043
BstNI CCWGG 1 cut(s) 797
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 3 cut(s) 359, 371, 795
BstUI CGCG 1 cut(s) 1019
BstV1I GCAGC 6 cut(s) 354, 587, 616, 744, 747, 994
BstV2I GAAGAC 2 cut(s) 441, 673
BstX2I RGATCY 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 1 cut(s) 799
BstZ17I GTATAC 1 cut(s) 247
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 3 cut(s) 371, 581, 1042
BtgI CCRYGG 2 cut(s) 322, 769
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 2 cut(s) 218, 1066
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 5 cut(s) 340, 566, 834, 1044, 1071
CfoI GCGC 5 cut(s) 82, 299, 547, 1021, 1054
Cfr10I RCCGGY 2 cut(s) 1042, 1069
Cfr13I GGNCC 3 cut(s) 375, 557, 1040
CseI GACGC 2 cut(s) 729, 910
Csp6I GTAC 1 cut(s) 385
CviAII CATG 4 cut(s) 214, 275, 323, 346
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 1 cut(s) 140
DinI GGCGCC 1 cut(s) 546
DpnI GATC 5 cut(s) 167, 801, 923, 942, 1077
DpnII GATC 5 cut(s) 165, 799, 921, 940, 1075
DrdI GACNNNNNNGTC 2 cut(s) 701, 884
DseDI GACNNNNNNGTC 2 cut(s) 701, 884
EaeI YGGCCR 2 cut(s) 369, 579
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 53, 59
EarI CTCTTC 2 cut(s) 53, 59
EciI GGCGGA 1 cut(s) 1088
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 322, 333
Eco31I GGTCTC 3 cut(s) 647, 824, 1138
Eco47I GGWCC 2 cut(s) 375, 557
Eco52I CGGCCG 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 453, 555
EcoO109I RGGNCCY 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 322, 333
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
ErhI CCWWGG 2 cut(s) 322, 333
Esp3I CGTCTC 1 cut(s) 893
FaeI CATG 4 cut(s) 217, 278, 326, 349
FaqI GGGAC 7 cut(s) 58, 388, 460, 727, 761, 775, 943
FatI CATG 4 cut(s) 213, 274, 322, 345
FauI CCCGC 3 cut(s) 1024, 1030, 1102
FbaI TGATCA 1 cut(s) 940
FblI GTMKAC 2 cut(s) 246, 783
FokI GGATG 2 cut(s) 205, 1073
FspBI CTAG 2 cut(s) 32, 339
GlaI GCGC 5 cut(s) 81, 298, 546, 1020, 1053
GsuI CTGGAG 2 cut(s) 500, 779
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 3 cut(s) 371, 581, 1042
HapII CCGG 6 cut(s) 360, 372, 555, 633, 1043, 1070
HgaI GACGC 2 cut(s) 729, 910
HhaI GCGC 5 cut(s) 82, 299, 547, 1021, 1054
Hin1I GRCGYC 2 cut(s) 545, 740
Hin1II CATG 4 cut(s) 217, 278, 326, 349
Hin6I GCGC 5 cut(s) 80, 297, 545, 1019, 1052
HinP1I GCGC 5 cut(s) 80, 297, 545, 1019, 1052
HincII GTYRAC 2 cut(s) 706, 826
HindII GTYRAC 2 cut(s) 706, 826
HinfI GANTC 4 cut(s) 237, 571, 641, 695
HpaII CCGG 6 cut(s) 360, 372, 555, 633, 1043, 1070
HphI GGTGA 6 cut(s) 139, 302, 310, 922, 946, 979
Hpy166II GTNNAC 7 cut(s) 247, 391, 706, 784, 826, 864, 970
Hpy188I TCNGA 5 cut(s) 180, 428, 873, 1060, 1080
Hpy188III TCNNGA 2 cut(s) 652, 944
Hpy8I GTNNAC 7 cut(s) 247, 391, 706, 784, 826, 864, 970
Hpy99I CGWCG 8 cut(s) 73, 668, 694, 704, 881, 991, 1009, 1060
HpyAV CCTTC 7 cut(s) 136, 469, 619, 658, 721, 742, 1018
HpyCH4III ACNGT 9 cut(s) 190, 679, 773, 818, 868, 934, 996, 1009, 1121
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 4 cut(s) 4, 508, 603, 982
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 32, 41, 484, 551, 635, 1010, 1043
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 2 cut(s) 545, 740
Hsp92II CATG 4 cut(s) 217, 278, 326, 349
HspAI GCGC 5 cut(s) 80, 297, 545, 1019, 1052
KasI GGCGCC 1 cut(s) 544
KroI GCCGGC 2 cut(s) 1042, 1069
KroNI GCCGGC 2 cut(s) 1044, 1071
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 5 cut(s) 165, 799, 921, 940, 1075
LmnI GCTCC 4 cut(s) 428, 635, 946, 1018
Lsp1109I GCAGC 6 cut(s) 354, 587, 616, 744, 747, 994
LweI GCATC 2 cut(s) 474, 1039
MaeI CTAG 2 cut(s) 32, 339
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 910
MalI GATC 5 cut(s) 167, 801, 923, 942, 1077
MboI GATC 5 cut(s) 165, 799, 921, 940, 1075
MboII GAAGA 7 cut(s) 40, 46, 446, 673, 862, 931, 1108
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 1 cut(s) 454
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 3 cut(s) 231, 635, 689
MmeI TCCRAC 2 cut(s) 834, 1038
MreI CGCCGGCG 1 cut(s) 1069
MroNI GCCGGC 2 cut(s) 1042, 1069
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 2 cut(s) 255, 999
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 6 cut(s) 360, 372, 555, 633, 1043, 1070
MspR9I CCNGG 3 cut(s) 361, 373, 797
MvaI CCWGG 1 cut(s) 797
MvnI CGCG 1 cut(s) 1019
MwoI GCNNNNNNNGC 8 cut(s) 23, 32, 41, 484, 551, 635, 1010, 1043
NaeI GCCGGC 2 cut(s) 1044, 1071
NarI GGCGCC 1 cut(s) 545
NciI CCSGG 2 cut(s) 361, 373
NcoI CCATGG 1 cut(s) 322
NdeII GATC 5 cut(s) 165, 799, 921, 940, 1075
NgoMIV GCCGGC 2 cut(s) 1042, 1069
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 4 cut(s) 217, 278, 326, 349
NlaIV GGNNCC 7 cut(s) 328, 376, 546, 637, 948, 1014, 1041
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 362
PaqCI CACCTGC 1 cut(s) 895
PcsI WCGNNNNNNNCGW 2 cut(s) 777, 885
PdiI GCCGGC 2 cut(s) 1044, 1071
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 1 cut(s) 571
PflFI GACNNNGTC 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 795
PleI GAGTC 3 cut(s) 231, 635, 689
PluTI GGCGCC 1 cut(s) 548
PpsI GAGTC 3 cut(s) 231, 635, 689
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 375
PsiI TTATAA 1 cut(s) 963
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 795
PspGI CCWGG 1 cut(s) 795
PspN4I GGNNCC 7 cut(s) 328, 376, 546, 637, 948, 1014, 1041
PspPI GGNCC 3 cut(s) 375, 557, 1040
PspPPI RGGWCCY 1 cut(s) 375
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 698
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 2 cut(s) 255, 999
Sau3AI GATC 5 cut(s) 165, 799, 921, 940, 1075
Sau96I GGNCC 3 cut(s) 375, 557, 1040
SchI GAGTC 3 cut(s) 231, 635, 689
ScrFI CCNGG 3 cut(s) 361, 373, 797
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 2 cut(s) 474, 1039
SfoI GGCGCC 1 cut(s) 546
SgrAI CRCCGGYG 1 cut(s) 1069
SinI GGWCC 2 cut(s) 375, 557
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 404, 803
SmoI CTYRAG 2 cut(s) 404, 803
Sse9I AATT 1 cut(s) 454
SspDI GGCGCC 1 cut(s) 544
SspMI CTAG 2 cut(s) 32, 339
StyD4I CCNGG 3 cut(s) 359, 371, 795
StyI CCWWGG 2 cut(s) 322, 333
TaaI ACNGT 9 cut(s) 190, 679, 773, 818, 868, 934, 996, 1009, 1121
TaiI ACGT 1 cut(s) 390
TaqI TCGA 5 cut(s) 102, 201, 651, 663, 858
TasI AATT 1 cut(s) 454
TauI GCSGC 4 cut(s) 212, 371, 672, 1037
TfiI GAWTC 1 cut(s) 571
Tru1I TTAA 2 cut(s) 255, 999
Tru9I TTAA 2 cut(s) 255, 999
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 6 cut(s) 342, 600, 629, 757, 760, 982
Tsp45I GTSAC 1 cut(s) 910
TspGWI ACGGA 3 cut(s) 688, 707, 1004
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 375, 557
XceI RCATGY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmiI GTMKAC 2 cut(s) 246, 783
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 2 cut(s) 32, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.