Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016078

Physical Location & Seq

Genomic Coordinates Reverse (-)

9548983 .. 9550331

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAAGACTGAAGCAAAACGCTTCGCCATCGAGATCGAAGACGACGACGAGTTCCTTTCTCAGGTAGCGGCGGCCGAGGCCGAAGCGCTCGCCTACAAGCGCCGTCGCATCAGCACCGTGCCCGCACAAAACGCCGCCGTTTCCTTCAGTTCCCACGCGAATAAAAAATTAGGCGCGGACCACGACGACGGCGGCCTCTACACCGCTGCTCTCAAGGGAAGTAATCGAGCACTCCCTGACACTCCCCGCGGCGGATTATCCAGAGGGAGGGTCAATGTCGGGGCGGCCGGGAACGACGGCGTCTCCGCTGGTGGTGATACGTGCTTCAAGTGCGGGAAGCCGGGGCATTGGGCCCGCGATTGTGATGCCCCCAGCGGAGGAGGAGGCGGTGGTGGGTATTATGGTAATTTTGGTGGCGGCGACTCTTCGATTTCTGTTCCGGAGAAAAATTGCCCTTGTGGGTATGGAGCCTGCCTGGTCCTCACTGCAAATACTGAGAAGAATCCGGGTCGAAGGTTTTACAAATGCCCTCTGAGACAGGAAAATGGAGGCTGTAGTTTCTTTGAGTGGTGTGACAATGCTGCTTCTGGGCCAAATGCCATGGCTACTACTGGTAGCGCTACTAGAAGCCATAGCTATGCTGCGTCTGATTCTTCGTTTCCAGCTCTAGAATGTCCCTGCGGTGGCGGTGTCTGCTTAATCTTAACTGCCAAAACTGGGAAAAATATCGGCAGCCAATTCTACCGTTGTCCAGCGAAGGAGGGAAGCTCTTGTGGGTTCTTCAAGTGGTGCAATGAGCATACTGCGGCAGCTGCTGGTGTTCCAGGTCGTGGTGCAAAGGTGCAATATGGTTTGAGCGAGGCAAACAACAAGGGGTATGTTGTAACTACTGGTTCTTCCTGCTTTAAGTGTGGAAAGGAAGGGCATTGGGCAAGAGATTGCCCAACAGTTCCTTCGTATAATGCTGCTCCGGCCGAAATGGGAGCACGGTCTGCTTCAGGGGGCTCTTGCTATAAGTGCGGCAAGCCAGGGCACTGGGCGCGGGACTGCCCTTCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016604 GO:0016605 GO:0016853 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCHC zf-GRF

Protein Analysis

354

Amino Acids

36.44

Weight (kDa)

8.5

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	107 - 122	3.5e-08	Zinc knuckle
Zn_ribbon_GRF	PF06839	150 - 193	4e-14	GRF zinc finger
Zn_ribbon_GRF	PF06839	225 - 266	2.3e-15	GRF zinc finger
zf-CCHC	PF00098	300 - 315	2.5e-08	Zinc knuckle
zf-CCHC	PF00098	336 - 352	8.2e-09	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42860
fragaria_vesca	FvH4_6g39844 FvH4_6g39844 FvH4_6g39844
malus_domestica	MD17G1125500.v1.1
prunus_persica	Prupe.3G190200_v2.0.a1
pyrus_communis	pycom17g11770
rosa_chinensis	RchiOBHm_Chr2g0154211
rosa_laevigata	RLG00000020764
rosa_roxburghii	Rroxscaffold_2G00094460
rosa_samantha	Rh2AG507900 Rh2BG518900 Rh2CG493200 Rh2DG529800
rosa_wichuraiana	Rw2G041710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccII	CGCG	5 cut(s)	158, 176, 249, 357, 1042
AccIII	TCCGGA	1 cut(s)	439
AcoI	YGGCCR	3 cut(s)	72, 285, 972
AcuI	CTGAAG	4 cut(s)	30, 130, 981, 1038
AcyI	GRCGYC	1 cut(s)	300
AfeI	AGCGCT	2 cut(s)	87, 619
AfiI	CCNNNNNNNGG	7 cut(s)	61, 251, 267, 377, 683, 717, 830
AgsI	TTSAA	2 cut(s)	328, 784
AjnI	CCWGG	3 cut(s)	474, 823, 1027
AjuI	GAANNNNNNNTTGG	2 cut(s)	937, 969
AluBI	AGCT	4 cut(s)	636, 665, 768, 812
AluI	AGCT	4 cut(s)	636, 665, 768, 812
Alw21I	GWGCWC	2 cut(s)	232, 988
Alw26I	GTCTC	2 cut(s)	307, 529
AlwNI	CAGNNNCTG	1 cut(s)	815
Aor13HI	TCCGGA	1 cut(s)	439
Aor51HI	AGCGCT	2 cut(s)	87, 619
AoxI	GGCC	7 cut(s)	72, 78, 193, 285, 351, 590, 972
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	7 cut(s)	206, 581, 641, 732, 809, 812, 965
AspLEI	GCGC	5 cut(s)	88, 102, 176, 620, 1042
AspS9I	GGNCC	5 cut(s)	178, 351, 352, 478, 590
AsuC2I	CCSGG	3 cut(s)	289, 342, 507
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	178, 478
BaeGI	GKGCMC	3 cut(s)	123, 355, 1035
BanII	GRGCYC	2 cut(s)	355, 1007
BbsI	GAAGAC	2 cut(s)	11, 45
Bbv12I	GWGCWC	2 cut(s)	232, 988
BbvI	GCAGC	7 cut(s)	193, 568, 628, 744, 799, 821, 952
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	4 cut(s)	87, 122, 205, 313
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	3 cut(s)	476, 825, 1029
BcnI	CCSGG	3 cut(s)	289, 342, 507
BcoDI	GTCTC	2 cut(s)	307, 529
BfaI	CTAG	2 cut(s)	624, 668
BfmI	CTRYAG	1 cut(s)	553
BfoI	RGCGCY	3 cut(s)	89, 103, 621
Bme1390I	CCNGG	6 cut(s)	289, 342, 476, 507, 825, 1029
Bme18I	GGWCC	2 cut(s)	178, 478
BmgT120I	GGNCC	5 cut(s)	178, 351, 352, 478, 590
BmiI	GGNNCC	2 cut(s)	353, 469
BmrFI	CCNGG	6 cut(s)	289, 342, 476, 507, 825, 1029
BmrI	ACTGGG	2 cut(s)	726, 1045
BmsI	GCATC	2 cut(s)	117, 355
BmuI	ACTGGG	2 cut(s)	726, 1045
BpiI	GAAGAC	2 cut(s)	11, 45
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	3 cut(s)	289, 342, 507
BsaAI	YACGTR	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	300
BsaJI	CCNNGG	5 cut(s)	75, 247, 341, 600, 1028
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	7 cut(s)	61, 251, 267, 377, 683, 717, 830
Bse1I	ACTGG	4 cut(s)	616, 721, 895, 1040
Bse3DI	GCAATG	1 cut(s)	799
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	3 cut(s)	476, 825, 1029
BseDI	CCNNGG	5 cut(s)	75, 247, 341, 600, 1028
BseLI	CCNNNNNNNGG	7 cut(s)	61, 251, 267, 377, 683, 717, 830
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	3 cut(s)	74, 486, 524
BseNI	ACTGG	4 cut(s)	616, 721, 895, 1040
BseRI	GAGGAG	2 cut(s)	393, 396
BseSI	GKGCMC	3 cut(s)	123, 355, 1035
BseX3I	CGGCCG	3 cut(s)	72, 285, 972
BseXI	GCAGC	7 cut(s)	193, 568, 628, 744, 799, 821, 952
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	5 cut(s)	158, 176, 249, 357, 1042
Bsh1285I	CGRYCG	3 cut(s)	75, 288, 975
BshFI	GGCC	7 cut(s)	74, 80, 195, 287, 353, 592, 974
BsiEI	CGRYCG	3 cut(s)	75, 288, 975
BsiHKAI	GWGCWC	2 cut(s)	232, 988
BsiSI	CCGG	5 cut(s)	288, 341, 440, 506, 971
BslFI	GGGAC	2 cut(s)	660, 1058
BslI	CCNNNNNNNGG	7 cut(s)	61, 251, 267, 377, 683, 717, 830
BsmAI	GTCTC	2 cut(s)	307, 529
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	660, 1058
BsnI	GGCC	7 cut(s)	74, 80, 195, 287, 353, 592, 974
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	6 cut(s)	123, 232, 355, 988, 1007, 1035
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	600
BspANI	GGCC	7 cut(s)	74, 80, 195, 287, 353, 592, 974
BspCNI	CTCAG	3 cut(s)	73, 487, 525
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	5 cut(s)	158, 176, 249, 357, 1042
BspLI	GGNNCC	2 cut(s)	353, 469
BsrDI	GCAATG	1 cut(s)	799
BsrI	ACTGG	4 cut(s)	616, 721, 895, 1040
BssECI	CCNNGG	5 cut(s)	75, 247, 341, 600, 1028
BssMI	GATC	1 cut(s)	33
BssNI	GRCGYC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	3 cut(s)	476, 825, 1029
Bst4CI	ACNGT	4 cut(s)	118, 746, 949, 990
Bst6I	CTCTTC	1 cut(s)	430
BstACI	GRCGYC	1 cut(s)	300
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	5 cut(s)	90, 123, 355, 472, 1025
BstDEI	CTNAG	3 cut(s)	60, 495, 533
BstDSI	CCRYGG	2 cut(s)	247, 600
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstFNI	CGCG	5 cut(s)	158, 176, 249, 357, 1042
BstH2I	RGCGCY	3 cut(s)	89, 103, 621
BstHHI	GCGC	5 cut(s)	88, 102, 176, 620, 1042
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	307, 529
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	3 cut(s)	75, 288, 975
BstMWI	GCNNNNNNNGC	9 cut(s)	77, 131, 330, 693, 812, 971, 992, 1017, 1039
BstNI	CCWGG	3 cut(s)	476, 825, 1029
BstSCI	CCNGG	6 cut(s)	287, 340, 474, 505, 823, 1027
BstSFI	CTRYAG	1 cut(s)	553
BstSLI	GKGCMC	3 cut(s)	123, 355, 1035
BstUI	CGCG	5 cut(s)	158, 176, 249, 357, 1042
BstV1I	GCAGC	7 cut(s)	193, 568, 628, 744, 799, 821, 952
BstV2I	GAAGAC	2 cut(s)	11, 45
BstXI	CCANNNNNNTGG	1 cut(s)	1035
BstZI	CGGCCG	3 cut(s)	72, 285, 972
BsuRI	GGCC	7 cut(s)	74, 80, 195, 287, 353, 592, 974
BtgI	CCRYGG	2 cut(s)	247, 600
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	483, 1033
Cac8I	GCNNGC	5 cut(s)	90, 123, 355, 472, 1025
CaiI	CAGNNNCTG	1 cut(s)	815
CfoI	GCGC	5 cut(s)	88, 102, 176, 620, 1042
Cfr13I	GGNCC	5 cut(s)	178, 351, 352, 478, 590
Cfr42I	CCGCGG	1 cut(s)	250
CseI	GACGC	2 cut(s)	289, 633
CviAII	CATG	1 cut(s)	601
DdeI	CTNAG	3 cut(s)	60, 495, 533
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	3 cut(s)	72, 285, 972
EagI	CGGCCG	3 cut(s)	72, 285, 972
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
EciI	GGCGGA	1 cut(s)	267
EclXI	CGGCCG	3 cut(s)	72, 285, 972
Eco130I	CCWWGG	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	355, 1007
Eco47I	GGWCC	2 cut(s)	178, 478
Eco47III	AGCGCT	2 cut(s)	87, 619
Eco52I	CGGCCG	3 cut(s)	72, 285, 972
Eco57I	CTGAAG	4 cut(s)	30, 130, 981, 1038
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	474, 823, 1027
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	2 cut(s)	355, 1007
ErhI	CCWWGG	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	1 cut(s)	604
FaqI	GGGAC	2 cut(s)	660, 1058
FatI	CATG	1 cut(s)	600
FauI	CCCGC	5 cut(s)	130, 254, 326, 362, 1035
FriOI	GRGCYC	2 cut(s)	355, 1007
FspBI	CTAG	2 cut(s)	624, 668
GlaI	GCGC	5 cut(s)	87, 101, 175, 619, 1041
GsaI	CCCAGC	1 cut(s)	375
HaeII	RGCGCY	3 cut(s)	89, 103, 621
HaeIII	GGCC	7 cut(s)	74, 80, 195, 287, 353, 592, 974
HapII	CCGG	5 cut(s)	288, 341, 440, 506, 971
HgaI	GACGC	2 cut(s)	289, 633
HhaI	GCGC	5 cut(s)	88, 102, 176, 620, 1042
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	5 cut(s)	86, 100, 174, 618, 1040
HinP1I	GCGC	5 cut(s)	86, 100, 174, 618, 1040
HinfI	GANTC	3 cut(s)	422, 502, 650
HpaII	CCGG	5 cut(s)	288, 341, 440, 506, 971
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	2 cut(s)	534, 649
Hpy188III	TCNNGA	4 cut(s)	31, 261, 440, 668
Hpy99I	CGWCG	6 cut(s)	47, 50, 108, 188, 191, 299
HpyAV	CCTTC	6 cut(s)	154, 507, 751, 914, 963, 1062
HpyCH4III	ACNGT	4 cut(s)	118, 746, 949, 990
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	488, 792, 836, 844
HpyF10VI	GCNNNNNNNGC	9 cut(s)	77, 131, 330, 693, 812, 971, 992, 1017, 1039
HpyF3I	CTNAG	3 cut(s)	60, 495, 533
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	5 cut(s)	86, 100, 174, 618, 1040
Kpn2I	TCCGGA	1 cut(s)	439
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	467, 973, 983
Lsp1109I	GCAGC	7 cut(s)	193, 568, 628, 744, 799, 821, 952
LweI	GCATC	2 cut(s)	117, 355
MaeI	CTAG	2 cut(s)	624, 668
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	572, 883
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	7 cut(s)	16, 50, 417, 511, 645, 772, 888
MhlI	GDGCHC	6 cut(s)	123, 232, 355, 988, 1007, 1035
MluCI	AATT	4 cut(s)	167, 406, 448, 737
MlyI	GAGTC	1 cut(s)	416
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	4 cut(s)	698, 704, 906, 1060
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	5 cut(s)	206, 249, 308, 375, 812
MspI	CCGG	5 cut(s)	288, 341, 440, 506, 971
MspR9I	CCNGG	6 cut(s)	289, 342, 476, 507, 825, 1029
MvaI	CCWGG	3 cut(s)	476, 825, 1029
MvnI	CGCG	5 cut(s)	158, 176, 249, 357, 1042
MwoI	GCNNNNNNNGC	9 cut(s)	77, 131, 330, 693, 812, 971, 992, 1017, 1039
NciI	CCSGG	3 cut(s)	289, 342, 507
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	2 cut(s)	353, 469
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	502, 650
PflFI	GACNNNGTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	830
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Ppu21I	YACGTR	1 cut(s)	321
Psp6I	CCWGG	3 cut(s)	474, 823, 1027
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	3 cut(s)	474, 823, 1027
PspN4I	GGNNCC	2 cut(s)	353, 469
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	5 cut(s)	178, 351, 352, 478, 590
PstNI	CAGNNNCTG	1 cut(s)	815
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	812
RseI	CAYNNNNRTG	1 cut(s)	636
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	698, 704, 906, 1060
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	5 cut(s)	178, 351, 352, 478, 590
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	6 cut(s)	289, 342, 476, 507, 825, 1029
SduI	GDGCHC	6 cut(s)	123, 232, 355, 988, 1007, 1035
SfaNI	GCATC	2 cut(s)	117, 355
SfcI	CTRYAG	1 cut(s)	553
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	2 cut(s)	178, 478
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	167, 406, 448, 737
SspMI	CTAG	2 cut(s)	624, 668
StyD4I	CCNGG	6 cut(s)	287, 340, 474, 505, 823, 1027
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	4 cut(s)	118, 746, 949, 990
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	5 cut(s)	30, 36, 226, 428, 511
TasI	AATT	4 cut(s)	167, 406, 448, 737
TauI	GCSGC	9 cut(s)	71, 74, 137, 195, 252, 287, 420, 809, 1023
TfiI	GAWTC	2 cut(s)	502, 650
Tru1I	TTAA	4 cut(s)	698, 704, 906, 1060
Tru9I	TTAA	4 cut(s)	698, 704, 906, 1060
TscAI	CASTG	2 cut(s)	490, 1040
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	7 cut(s)	206, 581, 641, 732, 809, 812, 965
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	490, 1040
Tth111I	GACNNNGTC	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	178, 478
XagI	CCTNNNNNAGG	1 cut(s)	59
XbaI	TCTAGA	1 cut(s)	667
XspI	CTAG	2 cut(s)	624, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.