Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0017400

Physical Location & Seq

Genomic Coordinates Forward (+)

12848199 .. 12848811

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGAGTTGTACAGCTTCGGAAAATGCTTGATCTTCTGGTGCATGCATCACAATGTCGTTCTGCACAATGTCAATACCCCAATTGCCGTAAGGTGAAGGGACTTTTCCGCCATGGAATTCAATGCAAAGTCCGTGCATCTGGAGGATGTGTTCTTTGCAAGAAAATGTGGTACCTTCTTCAACTTCATGCTCGAGCTTGCAAAATATCCGAGTGCCATGTGCCACGTTGCAGAGATTTAAAGGAGCATTTGAGGAGACTACAGCAGCAGTCTGATTCAAGAAGAAGAGCTGCTGTGATGGAGATGATGAGACAGAGGGCTGCCGAGCTACACAACAGTTCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

116

Amino Acids

13.42

Weight (kDa)

10.37

Isoelectric Point (pI)

65.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017400)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015400_v2.0.a1 Prupe.7G015400_v2.0.a1
pyrus_communis	pycom17g15050
rosa_chinensis	RchiOBHm_Chr2g0149711
rosa_laevigata	RLG00000020441
rosa_multiflora	Rmu_co8319157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097770
rosa_rugosa	Rorug02G0415400 Rorug02G0415500
rosa_samantha	Rh2AG475300 Rh2BG486700 Rh2CG460800
rosa_wichuraiana	Rw2G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	171
AciI	CCGC	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	2 cut(s)	12, 173
AgsI	TTSAA	3 cut(s)	122, 182, 279
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	16, 197, 290, 328
AluI	AGCT	4 cut(s)	16, 197, 290, 328
Alw26I	GTCTC	2 cut(s)	250, 304
Ama87I	CYCGRG	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	265, 290, 320
ApoI	RAATTY	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	277, 277, 307
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	250, 304
BfmI	CTRYAG	1 cut(s)	260
BisI	GCNGC	3 cut(s)	266, 291, 321
BlsI	GCNGC	3 cut(s)	267, 292, 322
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	173
BmsI	GCATC	2 cut(s)	56, 146
BpmI	CTGGAG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	3 cut(s)	277, 277, 307
BsgI	GTGCAG	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	250, 304
BsmFI	GGGAC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	45, 199
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	250, 304
BstMBI	GATC	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	277, 277, 307
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	45, 199
Csp6I	GTAC	2 cut(s)	11, 172
CviAII	CATG	4 cut(s)	44, 113, 188, 218
CviJI	RGCY	5 cut(s)	16, 197, 290, 320, 328
CviKI_1	RGCY	5 cut(s)	16, 197, 290, 320, 328
CviQI	GTAC	2 cut(s)	11, 172
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	4 cut(s)	47, 116, 191, 221
FaiI	YATR	4 cut(s)	45, 114, 189, 219
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	4 cut(s)	43, 112, 187, 217
Fnu4HI	GCNGC	3 cut(s)	266, 291, 321
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	266, 291, 321
GluI	GCNGC	3 cut(s)	266, 291, 321
GsuI	CTGGAG	1 cut(s)	162
Hin1II	CATG	4 cut(s)	47, 116, 191, 221
HinfI	GANTC	1 cut(s)	275
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	21, 211, 274
Hpy188III	TCNNGA	2 cut(s)	141, 279
HpyAV	CCTTC	2 cut(s)	91, 185
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	8 cut(s)	43, 47, 65, 126, 137, 159, 201, 231
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	4 cut(s)	47, 116, 191, 221
KpnI	GGTACC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	23, 126, 327
Lsp1109I	GCAGC	3 cut(s)	277, 277, 307
LweI	GCATC	2 cut(s)	56, 146
MaeII	ACGT	1 cut(s)	226
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	26, 170, 294, 297
MfeI	CAATTG	1 cut(s)	82
MluCI	AATT	2 cut(s)	82, 117
MnlI	CCTC	3 cut(s)	137, 246, 309
Mph1103I	ATGCAT	1 cut(s)	49
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	4 cut(s)	47, 116, 191, 221
NlaIV	GGNNCC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	47
PaeI	GCATGC	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	267, 292, 322
PspN4I	GGNNCC	1 cut(s)	173
PspXI	VCTCGAGB	1 cut(s)	192
RsaI	GTAC	2 cut(s)	12, 173
RsaNI	GTAC	2 cut(s)	11, 172
RseI	CAYNNNNRTG	1 cut(s)	52
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	3 cut(s)	266, 291, 321
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	7 cut(s)	18, 96, 177, 199, 229, 292, 330
SfaNI	GCATC	2 cut(s)	56, 146
SfcI	CTRYAG	1 cut(s)	260
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	82, 117
SsiI	CCGC	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	82, 117
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseI	GCWGC	3 cut(s)	265, 290, 320
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	122
XapI	RAATTY	1 cut(s)	117
XceI	RCATGY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.