Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017400

Physical Location & Seq

Genomic Coordinates Forward (+)

18980606 .. 18984845

Gene Structure 4240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCTTCCCCATGAGGTCATAAATTCCGTAGCACATGCAGTACGATGTCCTTTCAAGCAATGTCAGTATCCCAATTGTCGTCGGGTTTATGCGCTTCTCCTTCATGGAAGTCGATGCCAAGTTCGTGTACCAGGAGATTGTCTTCTCTGTAAGAAGATGTGGCTTCTCCTTTATCACCATGCTCTGTCTTGCAAAGAAGATGAGTGCTATGTGCCCCGTTGCAGTGTAATAAAAGACCAAGTGACGATAGGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

85

Amino Acids

9.78

Weight (kDa)

8.8

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	5 - 74	2.4e-11	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017400)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015400_v2.0.a1 Prupe.7G015400_v2.0.a1
pyrus_communis	pycom17g15050
rosa_chinensis	RchiOBHm_Chr2g0149711
rosa_laevigata	RLG00000020441
rosa_multiflora	Rmu_co8319157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097770
rosa_rugosa	Rorug02G0415400 Rorug02G0415500
rosa_samantha	Rh2AG475300 Rh2BG486700 Rh2CG460800
rosa_wichuraiana	Rw2G038730

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	22
AfaI	GTAC	2 cut(s)	42, 129
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
CfoI	GCGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	41, 128
CviAII	CATG	4 cut(s)	11, 35, 104, 179
CviJI	RGCY	1 cut(s)	163
CviKI_1	RGCY	1 cut(s)	163
CviQI	GTAC	2 cut(s)	41, 128
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	4 cut(s)	14, 38, 107, 182
FaiI	YATR	7 cut(s)	12, 20, 36, 90, 105, 180, 210
FatI	CATG	4 cut(s)	10, 34, 103, 178
GlaI	GCGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	14, 38, 107, 182
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	38, 192, 222
Hsp92II	CATG	4 cut(s)	14, 38, 107, 182
HspAI	GCGC	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	117, 144
LweI	GCATC	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	134, 166, 209
MfeI	CAATTG	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	22, 73
MnlI	CCTC	1 cut(s)	7
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	132
NlaIII	CATG	4 cut(s)	14, 38, 107, 182
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	42, 129
RsaNI	GTAC	2 cut(s)	41, 128
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	104
Sse9I	AATT	2 cut(s)	22, 73
StyD4I	CCNGG	1 cut(s)	130
TaqI	TCGA	1 cut(s)	112
TasI	AATT	2 cut(s)	22, 73
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.