Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017400

Physical Location & Seq

Genomic Coordinates Reverse (-)

53188774 .. 53201437

Gene Structure 12664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3036 bp

ATGAGGCTGCTTCCGCCAGTTACTAAACTCCACGATGACGCTGAACGGCTTCCCGGAATCAGAAGCCGGCTTGGGTTCAGCCTCGGCGGCGACAACCGACCCCTAACCCTAACCGCCACCATCCCCGTCCTTTCCTTCACCGGCGACAAGGTCGGCGAGACCTTCCTCGACCTGTTCCCGCTGTGGTTCTTGGCGGGAGAACCTAGCTTCAAAATAGGTGCTGCTGGGCCTTCAGGCAATGGGCTGCGTGTGGGCTATGGGTCTTTGCGCTATGAGAGTATTAGGTATGGGCCCATCCCTAATGGGCGTAGTGAGAAGTTCTGTGGTGCTCCAATTACTAAGGTGCGCCGAGCCGGGAAGAGGAAACTGAAGACATTCCGACTCCGAAGAGGAGCCGCCATGGCCTTGAGTTGGTCCCGGTGGAGCTGGAGGCTGAGCAATTGGATCTGCCTTTGTTTAAGGATGGTCTGGTGGAGATGTTGGGTGAGGTATAGCCGTGGGCGTAACCGAAGTGTTGCAGCTTTACTGCTCGGTGGTTTTGCTCTTAATCTTAAGCTCCTAGTTCATGCCCAGGATCAATCAGGGTTCATTAGCATAGATTGTGGACTCCCGGCAGAAAATTCAAGCTATATTGAAAGGACAACCGGCATTAACTATACATCAGATGCCAACTTCATTGACACTGGTGAAATTAAGATGGTATTTCCTGAATACAGAGATAAGAAGCAGCAGCCATACGAGTCTCTTAGGATGTTTCCCGAAGGGATAAGGAACTGCTACAAAATAAATGTTACAAGTCGCAGCAAGTATTTGATCCGAGCATGTTTCTATTACGGGAACTATGATGGTCAAGATAAATCACCAGAATTTGAACTTCATTTTGGTGCTAATTTGTGGGATTCAGTGACTTTTGATGATGCATCCACAGACATAAACAAGGAGCTTATACATTTTGTACCTGATGGAGTCTCAAATGTACATGTTTGTCTGGTGAACACAGGCTTTGGGGTTCCATTTATATCAGGGATAGAGCTGAGGCCTTTATCTAATGAATCGTATGAAGCACAAGTGGGATCCTTGGCACTTGAATGGCGGTATGGCACAGGTCTAATGGCTAATAAGAGGGGATACAGGTATCCAGAGGATGTTCATGACCGCTTCTGGTATATCTACGAAAGCCTCGACAATTGGGAACAATTAAATACTTCATCCACCATCGACCCTGACAATCAGAACAGCTTTGAATTACCATCTGTTGTTATGAGTACTGCCATCAAGCCAAAAAATAAGTTGAAAAGCTCCAACCAAACCAGACTAGATTTCAATACATTACCAAAAATGGAAAGATCTATATATAATGACCTATTTGCTTTGGAGTACATGTACCCAGCTACTAGTTACAGTAGTAAAGCAATGAGCGGAGGACAAGACATTTCAATCTTCAAGGCTGAGAATTCCACCCTTCCACCCATCCTCAATGCTTTTGAGATTTATAAGGTGAAAAAATTCGTAGAATTAGATACAAGTCAAGGAGATGTTGTTGCAATCACACAACTCAAGTCATCTTATAAAATCAGAAGAAACTGGCAAGGAGATCCTTGTGCCCCTCAAGTTTACTCATGGCAAGGTCTAAACTGTAGCTATCTGAAAAGTGATCAGGCCCTAAGAATCATATCCTTGAACTTGTCCTCAAGTGGACTAACATGGGAGATTCATCTTTCTATGTCCAATCTCACAATGCTAGAGACTTTGGATTTATCGAACAACAACTTAACAGGACCTGTTCCAGAATTTTTGTCTCAATTGTCAAATTTAAAAGTCCTAAACTTGGAGAACAACAATCTGAAAGGCTTGGTTCCAGTTGGACTGATTGAAAGAATGAATGATGGTTCACTAACATTAAGTTTGTGCCAAAATCCAAATGTATCTGGACTTGTTTCTTGCACGAAGATGGAAAAGAAGAAGCAGAAGTTCTTAATTCCGGTAGTTCTGTCAATTGCTGGAGTGTCAATCTTCTTATTAACTATATCAGCTATCTTGTTGGGTTTGAAAAGGAAAAGGAAACATGATGCAAAATCCGAAACTCAATTAGGATCATTGGGGTCAACTAAACGACCCTTTAAGCACTCTGAGATCCTGAAGTTCACCAACAACTTGGAAAAGACTCTTGGGAAAGGTGGATTTGGAACAGTTTATCATGGCTATATAGACAAAACTCAAGTAGCCATTAAGATGCTTTCGCCATCATCAGTTCAGGGGTTTCAAGAATTTCATGCAGAGGTTAATCTTCTGATGAGAGTTCATCATACAAACTTGACCAGCCTTGTTGGATATTGCAATGAGGAAACCAATATAGGGCTCGTGTACGAGTATATGGCCAATGGAAACTTACAAGAACATCTGTTAGATGACAGTTCCACTACTTTGGGTTGGGAAGATAGACTTCGAATAGCAGTAGACGCTGCACAAGGATTGGAGTATCTGCATTATGGTTGTAAGCCACCTATAATTCACAGGGATGTGAAATCAGCAAACATCTTGCTGACTGAAAACTTCCAAGCCAAAGTATCTGATTTTGGCCTATCCAGAAATTTCCCTACAGACCTTGTGACTCATATAACAACTGGCGTTGCTGGTACTCCTGGCTACCTTGACCCAGAGTACTACCTAACAAGCAGGTTAAATGAGAAAAGTGATGTTTATAGCTTTGGGATTGTGCTATTGGAAATTATCACAAGCCGACCTGTTATATCAGGAACTGTTGAGAGAATTCACATTAGTCAACGGGTTGCTTCCATGCTTGCGCAAGGAGACATTTACAGTATTATTGATCCAGGATTAGAGAGAAATTTCAATGCTAACTGTGTGTGGAAAGTTTTGGAGATAGCAATGGCATGTATATCTCCAGACCCCGTCAAAAGGCCAATGATGAGTCAGGTAGTGATGGAACTGAAGGAGTGTTTGGCAACAGAACTGGCTCGAACAAAGCAGAGAGGAAATGAAAATGGTTTAGGATATTCCACGTACGTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

1011

Amino Acids

113.53

Weight (kDa)

8.74

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	199 - 434	4e-78	Malectin-like domain
LRR_8	PF13855	581 - 618	6.9e-06	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	719 - 984	1.7e-50	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	719 - 981	1.3e-41	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017400)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015400_v2.0.a1 Prupe.7G015400_v2.0.a1
pyrus_communis	pycom17g15050
rosa_chinensis	RchiOBHm_Chr2g0149711
rosa_laevigata	RLG00000020441
rosa_multiflora	Rmu_co8319157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097770
rosa_rugosa	Rorug02G0415400 Rorug02G0415500
rosa_samantha	Rh2AG475300 Rh2BG486700 Rh2CG460800
rosa_wichuraiana	Rw2G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1494, 1569
Acc16I	TGCGCA	1 cut(s)	2805
Acc36I	ACCTGC	1 cut(s)	2667
AccBSI	CCGCTC	1 cut(s)	1419
AccI	GTMKAC	1 cut(s)	2457
AciI	CCGC	9 cut(s)	14, 87, 114, 179, 194, 396, 1093, 1156, 1419
AclWI	GGATC	9 cut(s)	452, 582, 808, 1068, 1081, 1589, 2101, 2128, 2825
AcoI	YGGCCR	1 cut(s)	2376
AcuI	CTGAAG	4 cut(s)	216, 389, 2159, 2972
AfiI	CCNNNNNNNGG	5 cut(s)	360, 411, 1828, 2355, 2919
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	2 cut(s)	979, 1380
AhlI	ACTAGT	1 cut(s)	1394
AjnI	CCWGG	3 cut(s)	570, 2641, 2833
AjuI	GAANNNNNNNTTGG	6 cut(s)	864, 896, 2151, 2183, 2945, 2977
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	6 cut(s)	152, 747, 973, 1739, 1803, 2805
AlwI	GGATC	9 cut(s)	452, 582, 808, 1068, 1081, 1589, 2101, 2128, 2825
AlwNI	CAGNNNCTG	2 cut(s)	1781, 2759
AoxI	GGCC	8 cut(s)	227, 290, 402, 1037, 1659, 2376, 2578, 2921
ApaI	GGGCCC	1 cut(s)	294
ApeKI	GCWGC	8 cut(s)	7, 221, 244, 518, 727, 730, 801, 2462
Asp700I	GAANNNNTTC	3 cut(s)	48, 374, 1505
AspLEI	GCGC	3 cut(s)	270, 348, 2806
AspS9I	GGNCC	6 cut(s)	227, 290, 291, 414, 1660, 1778
AsuC2I	CCSGG	4 cut(s)	54, 355, 418, 611
AsuHPI	GGTGA	7 cut(s)	130, 496, 698, 852, 1003, 1510, 2137
AsuII	TTCGAA	1 cut(s)	2446
AvaII	GGWCC	2 cut(s)	414, 1778
BaeGI	GKGCMC	2 cut(s)	294, 1606
BalI	TGGCCA	1 cut(s)	2378
BamHI	GGATCC	1 cut(s)	1073
BanII	GRGCYC	2 cut(s)	294, 2361
BauI	CACGAG	1 cut(s)	2360
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	1034
BbvI	GCAGC	7 cut(s)	208, 231, 530, 739, 742, 813, 2449
BceAI	ACGGC	2 cut(s)	62, 480
BciT130I	CCWGG	3 cut(s)	572, 2643, 2835
BciVI	GTATCC	2 cut(s)	1121, 1146
BclI	TGATCA	1 cut(s)	1654
BcnI	CCSGG	4 cut(s)	54, 355, 418, 611
BcoDI	GTCTC	6 cut(s)	152, 747, 973, 1739, 1803, 2805
BcuI	ACTAGT	1 cut(s)	1394
BfaI	CTAG	5 cut(s)	204, 560, 1316, 1395, 1742
BfmI	CTRYAG	2 cut(s)	1636, 2598
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	2667
BfuI	GTATCC	2 cut(s)	1121, 1146
BglI	GCCNNNNNGGC	2 cut(s)	87, 401
BglII	AGATCT	1 cut(s)	1346
BlpI	GCTNAGC	1 cut(s)	434
BmcAI	AGTACT	2 cut(s)	1267, 2663
Bme1390I	CCNGG	7 cut(s)	54, 355, 418, 572, 611, 2643, 2835
Bme18I	GGWCC	2 cut(s)	414, 1778
BmgT120I	GGNCC	6 cut(s)	227, 290, 291, 414, 1660, 1778
BmiI	GGNNCC	6 cut(s)	292, 394, 416, 1011, 1075, 1857
BmrFI	CCNGG	7 cut(s)	54, 355, 418, 572, 611, 2643, 2835
BmsI	GCATC	5 cut(s)	655, 907, 929, 2059, 2223
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	3 cut(s)	448, 2022, 2889
Bpu10I	CCTNAGC	1 cut(s)	1034
Bpu1102I	GCTNAGC	1 cut(s)	434
Bpu14I	TTCGAA	1 cut(s)	2446
BpuEI	CTTGAG	5 cut(s)	427, 1541, 1593, 1675, 2202
BpuMI	CCSGG	4 cut(s)	54, 355, 418, 611
BsaAI	YACGTR	2 cut(s)	3024, 3028
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	5 cut(s)	82, 399, 496, 570, 1077
BsaWI	WCCGGW	1 cut(s)	1981
BsaXI	ACNNNNNCTCC	4 cut(s)	1367, 1397, 1524, 1554
Bsc4I	CCNNNNNNNGG	5 cut(s)	360, 411, 1828, 2355, 2919
Bse118I	RCCGGY	3 cut(s)	66, 140, 644
Bse1I	ACTGG	6 cut(s)	17, 688, 1589, 1859, 2629, 2979
Bse3DI	GCAATG	4 cut(s)	244, 1419, 2344, 2895
BseBI	CCWGG	3 cut(s)	572, 2643, 2835
BseDI	CCNNGG	5 cut(s)	82, 399, 496, 570, 1077
BseGI	GGATG	9 cut(s)	120, 294, 468, 756, 920, 1150, 1208, 1470, 2524
BseLI	CCNNNNNNNGG	5 cut(s)	360, 411, 1828, 2355, 2919
BseMI	GCAATG	4 cut(s)	244, 1419, 2344, 2895
BseMII	CTCAG	4 cut(s)	425, 1025, 1440, 2121
BseNI	ACTGG	6 cut(s)	17, 688, 1589, 1859, 2629, 2979
BseRI	GAGGAG	1 cut(s)	405
BseSI	GKGCMC	2 cut(s)	294, 1606
BseXI	GCAGC	7 cut(s)	208, 231, 530, 739, 742, 813, 2449
BseYI	CCCAGC	2 cut(s)	224, 1387
BsgI	GTGCAG	1 cut(s)	2448
BshFI	GGCC	8 cut(s)	229, 292, 404, 1039, 1661, 2378, 2580, 2923
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	8 cut(s)	54, 67, 141, 354, 418, 611, 645, 1982
BsiWI	CGTACG	1 cut(s)	3024
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	5 cut(s)	360, 411, 1828, 2355, 2919
BsmAI	GTCTC	6 cut(s)	152, 747, 973, 1739, 1803, 2805
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	8 cut(s)	229, 292, 404, 1039, 1661, 2378, 2580, 2923
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	2446
Bsp120I	GGGCCC	1 cut(s)	290
Bsp1286I	GDGCHC	4 cut(s)	294, 331, 1606, 2361
Bsp1407I	TGTACA	1 cut(s)	976
Bsp1720I	GCTNAGC	1 cut(s)	434
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	9 cut(s)	14, 87, 114, 179, 194, 396, 1093, 1156, 1419
BspANI	GGCC	8 cut(s)	229, 292, 404, 1039, 1661, 2378, 2580, 2923
BspCNI	CTCAG	4 cut(s)	426, 1026, 1441, 2122
BspHI	TCATGA	1 cut(s)	1150
BspLI	GGNNCC	6 cut(s)	292, 394, 416, 1011, 1075, 1857
BspMI	ACCTGC	1 cut(s)	2667
BspPI	GGATC	9 cut(s)	452, 582, 808, 1068, 1081, 1589, 2101, 2128, 2825
BspT104I	TTCGAA	1 cut(s)	2446
BspTI	CTTAAG	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	1419
BsrDI	GCAATG	4 cut(s)	244, 1419, 2344, 2895
BsrFI	RCCGGY	3 cut(s)	66, 140, 644
BsrGI	TGTACA	1 cut(s)	976
BsrI	ACTGG	6 cut(s)	17, 688, 1589, 1859, 2629, 2979
BssAI	RCCGGY	3 cut(s)	66, 140, 644
BssECI	CCNNGG	5 cut(s)	82, 399, 496, 570, 1077
BssSI	CACGAG	1 cut(s)	2360
BssT1I	CCWWGG	2 cut(s)	399, 1077
Bst2BI	CACGAG	1 cut(s)	2360
Bst2UI	CCWGG	3 cut(s)	572, 2643, 2835
Bst4CI	ACNGT	8 cut(s)	1403, 1637, 2191, 2414, 2761, 2822, 2864, 3033
Bst6I	CTCTTC	2 cut(s)	353, 382
BstAFI	CTTAAG	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	976
BstBAI	YACGTR	2 cut(s)	3024, 3028
BstBI	TTCGAA	1 cut(s)	2446
BstC8I	GCNNGC	2 cut(s)	68, 2802
BstDEI	CTNAG	7 cut(s)	339, 434, 746, 1034, 1449, 1664, 2130
BstDSI	CCRYGG	2 cut(s)	399, 496
BstF5I	GGATG	9 cut(s)	120, 294, 468, 756, 920, 1150, 1208, 1470, 2524
BstHHI	GCGC	3 cut(s)	270, 348, 2806
BstMAI	GTCTC	6 cut(s)	152, 747, 973, 1739, 1803, 2805
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 87, 401, 2459
BstNI	CCWGG	3 cut(s)	572, 2643, 2835
BstNSI	RCATGY	4 cut(s)	825, 983, 1384, 2898
BstSCI	CCNGG	7 cut(s)	52, 353, 416, 570, 609, 2641, 2833
BstSFI	CTRYAG	2 cut(s)	1636, 2598
BstSLI	GKGCMC	2 cut(s)	294, 1606
BstSNI	TACGTA	1 cut(s)	3028
BstV1I	GCAGC	7 cut(s)	208, 231, 530, 739, 742, 813, 2449
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	5 cut(s)	444, 1073, 1346, 1594, 2133
BstXI	CCANNNNNNTGG	2 cut(s)	2155, 2425
BstYI	RGATCY	5 cut(s)	444, 1073, 1346, 1594, 2133
BsuI	GTATCC	2 cut(s)	1121, 1146
BsuRI	GGCC	8 cut(s)	229, 292, 404, 1039, 1661, 2378, 2580, 2923
BtgI	CCRYGG	2 cut(s)	399, 496
BtsCI	GGATG	9 cut(s)	120, 294, 468, 756, 920, 1150, 1208, 1470, 2524
BtsIMutI	CAGTG	2 cut(s)	681, 909
BveI	ACCTGC	1 cut(s)	2667
Cac8I	GCNNGC	2 cut(s)	68, 2802
CaiI	CAGNNNCTG	2 cut(s)	1781, 2759
CciI	TCATGA	1 cut(s)	1150
CfoI	GCGC	3 cut(s)	270, 348, 2806
Cfr10I	RCCGGY	3 cut(s)	66, 140, 644
Cfr13I	GGNCC	6 cut(s)	227, 290, 291, 414, 1660, 1778
CseI	GACGC	2 cut(s)	47, 2468
DdeI	CTNAG	7 cut(s)	339, 434, 746, 1034, 1449, 1664, 2130
DraI	TTTAAA	1 cut(s)	1815
EaeI	YGGCCR	1 cut(s)	2376
Eam1104I	CTCTTC	2 cut(s)	353, 382
EarI	CTCTTC	2 cut(s)	353, 382
Eco105I	TACGTA	1 cut(s)	3028
Eco130I	CCWWGG	2 cut(s)	399, 1077
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	2 cut(s)	294, 2361
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	414, 1778
Eco57I	CTGAAG	4 cut(s)	216, 389, 2159, 2972
EcoO109I	RGGNCCY	2 cut(s)	1660, 1778
EcoRI	GAATTC	2 cut(s)	1453, 2769
EcoRII	CCWGG	3 cut(s)	570, 2641, 2833
EcoT14I	CCWWGG	2 cut(s)	399, 1077
EcoT22I	ATGCAT	1 cut(s)	922
EcoT38I	GRGCYC	2 cut(s)	294, 2361
ErhI	CCWWGG	2 cut(s)	399, 1077
FalI	AAGNNNNNCTT	2 cut(s)	2427, 2459
FaqI	GGGAC	1 cut(s)	400
FauI	CCCGC	2 cut(s)	186, 187
FbaI	TGATCA	1 cut(s)	1654
FblI	GTMKAC	1 cut(s)	2457
FokI	GGATG	9 cut(s)	107, 281, 475, 763, 907, 1157, 1195, 1457, 2531
FriOI	GRGCYC	2 cut(s)	294, 2361
FspBI	CTAG	5 cut(s)	204, 560, 1316, 1395, 1742
FspI	TGCGCA	1 cut(s)	2805
GlaI	GCGC	3 cut(s)	269, 347, 2805
GsaI	CCCAGC	2 cut(s)	228, 1391
GsuI	CTGGAG	3 cut(s)	448, 2022, 2889
HaeIII	GGCC	8 cut(s)	229, 292, 404, 1039, 1661, 2378, 2580, 2923
HapII	CCGG	8 cut(s)	54, 67, 141, 354, 418, 611, 645, 1982
HgaI	GACGC	2 cut(s)	47, 2468
HhaI	GCGC	3 cut(s)	270, 348, 2806
Hin6I	GCGC	3 cut(s)	268, 346, 2804
HinP1I	GCGC	3 cut(s)	268, 346, 2804
HincII	GTYRAC	2 cut(s)	2106, 2783
HindII	GTYRAC	2 cut(s)	2106, 2783
HpaII	CCGG	8 cut(s)	54, 67, 141, 354, 418, 611, 645, 1982
HphI	GGTGA	7 cut(s)	130, 496, 698, 852, 1003, 1510, 2137
HpyAV	CCTTC	6 cut(s)	145, 172, 240, 755, 1472, 2947
HpyCH4III	ACNGT	8 cut(s)	1403, 1637, 2191, 2414, 2761, 2822, 2864, 3033
HpyCH4IV	ACGT	2 cut(s)	3023, 3027
HpyCH4V	TGCA	9 cut(s)	518, 920, 1544, 1944, 2072, 2276, 2337, 2465, 2485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 87, 401, 2459
HpyF3I	CTNAG	7 cut(s)	339, 434, 746, 1034, 1449, 1664, 2130
HpySE526I	ACGT	2 cut(s)	3023, 3027
HspAI	GCGC	3 cut(s)	268, 346, 2804
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	1654
LmnI	GCTCC	6 cut(s)	334, 392, 423, 561, 940, 1304
Lsp1109I	GCAGC	7 cut(s)	208, 231, 530, 739, 742, 813, 2449
LweI	GCATC	5 cut(s)	655, 907, 929, 2059, 2223
MaeI	CTAG	5 cut(s)	204, 560, 1316, 1395, 1742
MaeII	ACGT	2 cut(s)	3023, 3027
MaeIII	GTNAC	6 cut(s)	19, 503, 790, 904, 1397, 2608
MbiI	CCGCTC	1 cut(s)	1419
MfeI	CAATTG	4 cut(s)	439, 1186, 1802, 1995
MflI	RGATCY	5 cut(s)	444, 1073, 1346, 1594, 2133
MhlI	GDGCHC	4 cut(s)	294, 331, 1606, 2361
MlsI	TGGCCA	1 cut(s)	2378
MluNI	TGGCCA	1 cut(s)	2378
MlyI	GAGTC	7 cut(s)	375, 600, 749, 975, 2158, 2605, 2941
MmeI	TCCRAC	4 cut(s)	403, 1326, 1843, 2308
Mox20I	TGGCCA	1 cut(s)	2378
Mph1103I	ATGCAT	1 cut(s)	922
MroNI	GCCGGC	1 cut(s)	66
MroXI	GAANNNNTTC	3 cut(s)	48, 374, 1505
MscI	TGGCCA	1 cut(s)	2378
MslI	CAYNNNNRTG	5 cut(s)	882, 1087, 1949, 2231, 2517
Msp20I	TGGCCA	1 cut(s)	2378
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	8 cut(s)	54, 67, 141, 354, 418, 611, 645, 1982
MspR9I	CCNGG	7 cut(s)	54, 355, 418, 572, 611, 2643, 2835
MunI	CAATTG	4 cut(s)	439, 1186, 1802, 1995
MvaI	CCWGG	3 cut(s)	572, 2643, 2835
MwoI	GCNNNNNNNGC	4 cut(s)	13, 87, 401, 2459
NaeI	GCCGGC	1 cut(s)	68
NciI	CCSGG	4 cut(s)	54, 355, 418, 611
NcoI	CCATGG	1 cut(s)	399
NgoMIV	GCCGGC	1 cut(s)	66
NlaIV	GGNNCC	6 cut(s)	292, 394, 416, 1011, 1075, 1857
NmeAIII	GCCGAG	2 cut(s)	63, 374
NmuCI	GTSAC	2 cut(s)	904, 2608
NsbI	TGCGCA	1 cut(s)	2805
NsiI	ATGCAT	1 cut(s)	922
NspI	RCATGY	4 cut(s)	825, 983, 1384, 2898
NspV	TTCGAA	1 cut(s)	2446
PagI	TCATGA	1 cut(s)	1150
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	2 cut(s)	979, 1380
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PdiI	GCCGGC	1 cut(s)	68
PdmI	GAANNNNTTC	3 cut(s)	48, 374, 1505
PfeI	GAWTC	5 cut(s)	57, 899, 1052, 1668, 1711
Pfl23II	CGTACG	1 cut(s)	3024
PflFI	GACNNNGTC	2 cut(s)	149, 2912
PfoI	TCCNGGA	2 cut(s)	52, 2833
PleI	GAGTC	7 cut(s)	375, 600, 748, 974, 2158, 2605, 2940
PpsI	GAGTC	7 cut(s)	375, 600, 748, 974, 2158, 2605, 2940
Ppu21I	YACGTR	2 cut(s)	3024, 3028
PpuMI	RGGWCCY	1 cut(s)	1778
PscI	ACATGT	2 cut(s)	979, 1380
PsiI	TTATAA	2 cut(s)	1494, 1569
Psp5II	RGGWCCY	1 cut(s)	1778
Psp6I	CCWGG	3 cut(s)	570, 2641, 2833
PspFI	CCCAGC	2 cut(s)	224, 1387
PspGI	CCWGG	3 cut(s)	570, 2641, 2833
PspLI	CGTACG	1 cut(s)	3024
PspN4I	GGNNCC	6 cut(s)	292, 394, 416, 1011, 1075, 1857
PspOMI	GGGCCC	1 cut(s)	290
PspPI	GGNCC	6 cut(s)	227, 290, 291, 414, 1660, 1778
PspPPI	RGGWCCY	1 cut(s)	1778
PstNI	CAGNNNCTG	2 cut(s)	1781, 2759
PsuI	RGATCY	5 cut(s)	444, 1073, 1346, 1594, 2133
PsyI	GACNNNGTC	2 cut(s)	149, 2912
RseI	CAYNNNNRTG	5 cut(s)	882, 1087, 1949, 2231, 2517
Sau96I	GGNCC	6 cut(s)	227, 290, 291, 414, 1660, 1778
ScaI	AGTACT	2 cut(s)	1267, 2663
SchI	GAGTC	7 cut(s)	375, 600, 749, 975, 2158, 2605, 2941
ScrFI	CCNGG	7 cut(s)	54, 355, 418, 572, 611, 2643, 2835
SduI	GDGCHC	4 cut(s)	294, 331, 1606, 2361
SfaNI	GCATC	5 cut(s)	655, 907, 929, 2059, 2223
SfcI	CTRYAG	2 cut(s)	1636, 2598
SfuI	TTCGAA	1 cut(s)	2446
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	414, 1778
SmiMI	CAYNNNNRTG	5 cut(s)	882, 1087, 1949, 2231, 2517
SmlI	CTYRAG	6 cut(s)	406, 551, 1556, 1608, 1690, 2217
SmoI	CTYRAG	6 cut(s)	406, 551, 1556, 1608, 1690, 2217
SnaBI	TACGTA	1 cut(s)	3028
SpeI	ACTAGT	1 cut(s)	1394
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	9 cut(s)	14, 87, 114, 179, 194, 396, 1093, 1156, 1419
SspMI	CTAG	5 cut(s)	204, 560, 1316, 1395, 1742
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	7 cut(s)	52, 353, 416, 570, 609, 2641, 2833
StyI	CCWWGG	2 cut(s)	399, 1077
TaaI	ACNGT	8 cut(s)	1403, 1637, 2191, 2414, 2761, 2822, 2864, 3033
TaiI	ACGT	2 cut(s)	3026, 3030
TaqI	TCGA	6 cut(s)	168, 1182, 1218, 1760, 2446, 2980
TatI	WGTACW	4 cut(s)	976, 1265, 1377, 2661
TauI	GCSGC	2 cut(s)	90, 398
TfiI	GAWTC	5 cut(s)	57, 899, 1052, 1668, 1711
TscAI	CASTG	2 cut(s)	688, 909
TseFI	GTSAC	2 cut(s)	904, 2608
TseI	GCWGC	8 cut(s)	7, 221, 244, 518, 727, 730, 801, 2462
Tsp45I	GTSAC	2 cut(s)	904, 2608
TspRI	CASTG	2 cut(s)	688, 909
Tth111I	GACNNNGTC	2 cut(s)	149, 2912
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	414, 1778
XceI	RCATGY	4 cut(s)	825, 983, 1384, 2898
XmiI	GTMKAC	1 cut(s)	2457
XmnI	GAANNNNTTC	3 cut(s)	48, 374, 1505
XspI	CTAG	5 cut(s)	204, 560, 1316, 1395, 1742
ZrmI	AGTACT	2 cut(s)	1267, 2663
Zsp2I	ATGCAT	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.