Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017400

Physical Location & Seq

Genomic Coordinates Reverse (-)

53180561 .. 53185092

Gene Structure 4532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0415400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGATGTTGCTTCCACCGAAGCACATCCTCTTTGCGCTGCTTGGTGGTTTTTCTCTTATACTCCTAGTCCATGCCCAGGATGATCAATCAGGCTTCATTAGCATAGATTGCGGCCGAACTCAAAATTCCAGCTACACTGAAAAGACAACAGGCATCAACTACATTTCTGACACAGGCTTCATAGACACCGGTGAAAGTAAGCTCGTTTTGCGTTTTGTAAAAGATATTTATCAACAGCCATACTGGGGTGTCAGGAGCTTTCGTGAAGGAATCAGGAACTGCTACAAGATCAATGTTACAAGTGGGGACAAATATTTGATCAGAGCAAGTTTCGTGTATGGGAACTACGATGGCAAAGATGAACTACCAACATTCCTCCTTCATCTTGGAACAAATTTGTGGGATTCAGTGAAGGTGGAGAATGTATCCTATCTCATAAACAAGGAGATCATCCATGTCCCTCTCCGAAATTATATACATGTTTGTCTGGTGAACAATGGCTCCGGGGTTCCGTTTATATCAGCATTAGAATTAAGGCCTTTGAACATTACATCCTATCCAACACAAATTGGGTCCTTGGCACTTAACTGGCGGCTTGACATTGGACAAATAGCACCTGATCTAAAATTTTATAGGTATCCAAAGGATATTTATGATCGCTTTTGGGATCCCTATGAGGATGTTGACAATGAGTGGTTAACATTGAATACTTCATCCACAGTCGACTTTGACAAACACAACAGGTACCAACCAGCATCAATTGTCATGAGCACAGCTGCCACATCACGAAATGCCAATGTTTCCTTGAATTTATGGTGGGATCCTCCTATTGATGCAAACGATACAGAATATTATGTTTACATGCACTTTGCAGAAATTGAAAAGCTCCAATCAAACGAGTCCAGAATGCAGTACATTACTAACCATGGAGAGCTTTTCCAGGAGTCATTTTCTGCTAGTTACTTGTATACCACAACAATTTACAGCATTAAAGGTTTGAGAGGAGGGCAGAACTTTTCAATCATCAAGGATGACAACTCTACCCTTCCACCCAGTATCAATGGACTTGAGGTCTACACACTGAAAGAATTCCTAGAATTAGAAACAAACCAAGAGGATGTTGAAGCAATCACATACGTCAAGTCAGCTTATGAAATTACAAAGAATTGGCAGGGAGATCCATGTCTCCCACTAAACTACTTGTGGGAAGGCCTAATATGTAGCTATCCTGAAAACGACTCCCCAAGAATCATTTCCTTGGACTTGTCGTCGAGTGGATTAACAGGAGAGGTTTCTCGTTCAATATCCAATCTCGCAATGATACAAATATTGGATTTATCAAACAACAATTTGACAGGACCAATTCCGGACTTTTTGTCTCAATTGCCAGATTTAAATGTCCTGAACCTGGAGAAAAACAAGTTCACAGGCTCACTTCCACTAGGACTCGTTGATAGAAGGAAGAGTAGCCTCCTATCAATAAGTTTGTGTGACAACCCAAATCTAGCCGGAAATGAATCTTGCACAACAAAGAAGAAGAAGAAGAAGAACAAAAGCATTATTCCAATAATTGGAGCTATTGCCGGAATTTCAACCCTCATTATAGCTGGAGCAGTTTTCTTTTGTTTCTGTAAAAGGAAAAGACAACATGTAGCTGCAATCAATTCAAAACCCAACCCTGGATCAGTGGAACTCGAGCAAAAAAACCGAAAGTTTACATACTCTGAGATCCTCAAGATCACAAACAACCGACAAAGGGTTCTTGGCAAAGGTGGATTTGGAACTGTTTATCATGGCTACATAGATGACAAAACTCAAGTAGCTGTCAAGCTGCTTTCACCATCATCAAGTCAAGGACTTCAACAATTTCATGCAGAGGTTCATCTTCTTATGAGAGTTCATCATACAAACTTGACTAGCCTCGTTGGATATTGTGATGACGAAATCAACAAAGGGCTTGTTTACGAGTACATGGCCAATGGAAACTTGCAAGCATTTCTCTCAGATAAAAGTTCAGATGTCTTGACATGGAACGGAAGACTTCAAATAGCAACAGAAGCTGCACAAGGATTGGAGTATCTACACTATGGTTGTAAACCAACTATGATCCATAGAGATGTGAAATCAACAAACATCTTACTCAATGAAAAGTTCCAAGCTAAACTCTCTGATTTTGGCCTGTCAAGAAACTTTGCTCCAGGTGATGGGACTCATATAGTTACAGGTGTTGCTGGGACTCCTGGCTACCTGGCCCCTGAGTACCATCAATCAAACAGGCTGAATGAGAAGAGTGATGTTTATAGCTTTGGGATTGTACTGCTTGAGATTATCACTGGTCAACCTGTTTATTCTAGAACAAATGGTGAGAGAACTCACATTAGTAGATGGGTTGAACTCATGCTTCGGCAAGGAGACATTTACTGTATCATTGATCCGATGTTAGAGAGAAACTTCAATGTCAACTCTGCCTGGAAAGCTGTTGAGATAGGAATGGCATGTGTATCTGCAGAGGCCAGCAAGAGGCCAGTCATGAGCAATGTTGTGATGGAACTAAAAGAGTGTTTGGCAGCACAACTCAATCTGACAAACCTCAGCAGCTATGAAACTGAACTAGGAAGTTCCATTGATGTGGTGTCTCAAAATAACTCCATCACTATGATGCGTCCCTCAGTAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

892

Amino Acids

100.25

Weight (kDa)

6.07

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	35 - 360	2.8e-103	Malectin-like domain
Pkinase	PF00069	584 - 847	3.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	585 - 790	1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017400)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015400_v2.0.a1 Prupe.7G015400_v2.0.a1
pyrus_communis	pycom17g15050
rosa_chinensis	RchiOBHm_Chr2g0149711
rosa_laevigata	RLG00000020441
rosa_multiflora	Rmu_co8319157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097770
rosa_rugosa	Rorug02G0415400 Rorug02G0415500
rosa_samantha	Rh2AG475300 Rh2BG486700 Rh2CG460800
rosa_wichuraiana	Rw2G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	744
AccB1I	GGYRCC	1 cut(s)	744
AccB7I	CCANNNNNTGG	2 cut(s)	1571, 2204
AccI	GTMKAC	3 cut(s)	723, 968, 1074
AccIII	TCCGGA	1 cut(s)	1366
AciI	CCGC	2 cut(s)	111, 592
AclWI	GGATC	9 cut(s)	662, 675, 815, 828, 1172, 1690, 1723, 2101, 2426
AcoI	YGGCCR	2 cut(s)	112, 1974
AcsI	RAATTY	6 cut(s)	124, 394, 626, 808, 1088, 1587
AfaI	GTAC	5 cut(s)	746, 914, 1970, 2261, 2316
AfiI	CCNNNNNNNGG	9 cut(s)	76, 245, 1408, 1571, 1679, 1756, 2204, 2520, 2673
AflIII	ACRYGT	2 cut(s)	478, 1648
AgeI	ACCGGT	1 cut(s)	188
AhdI	GACNNNNNGTC	3 cut(s)	1070, 1267, 1375
AjnI	CCWGG	8 cut(s)	75, 939, 1407, 1678, 2197, 2239, 2247, 2468
AjuI	GAANNNNNNNTTGG	2 cut(s)	1237, 1269
AloI	GAACNNNNNNTCC	4 cut(s)	485, 517, 536, 568
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	4 cut(s)	1190, 1383, 2406, 2640
AlwI	GGATC	9 cut(s)	662, 675, 815, 828, 1172, 1690, 1723, 2101, 2426
AlwNI	CAGNNNCTG	2 cut(s)	279, 2060
Ama87I	CYCGRG	1 cut(s)	1694
Aor13HI	TCCGGA	1 cut(s)	1366
AoxI	GGCC	8 cut(s)	112, 536, 1210, 1974, 2176, 2250, 2511, 2522
ApeKI	GCWGC	7 cut(s)	37, 776, 1655, 1831, 2060, 2567, 2595
ApoI	RAATTY	6 cut(s)	124, 394, 626, 808, 1088, 1587
AsiGI	ACCGGT	1 cut(s)	188
Asp700I	GAANNNNTTC	2 cut(s)	1088, 1252
Asp718I	GGTACC	1 cut(s)	744
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	573, 1358, 2251
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	5 cut(s)	203, 502, 1830, 2213, 2375
AvaI	CYCGRG	1 cut(s)	1694
AvaII	GGWCC	2 cut(s)	573, 1358
BalI	TGGCCA	1 cut(s)	1976
BamHI	GGATCC	2 cut(s)	667, 820
BanI	GGYRCC	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	2044
Bbv12I	GWGCWC	1 cut(s)	773
BbvCI	CCTCAGC	1 cut(s)	2591
BbvI	GCAGC	7 cut(s)	24, 763, 1642, 1818, 2047, 2579, 2607
BccI	CCATC	7 cut(s)	344, 1849, 2198, 2271, 2379, 2539, 2657
BciT130I	CCWGG	8 cut(s)	77, 941, 1409, 1680, 2199, 2241, 2249, 2470
BciVI	GTATCC	2 cut(s)	436, 648
BclI	TGATCA	2 cut(s)	82, 318
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	4 cut(s)	1190, 1383, 2406, 2640
BfaI	CTAG	8 cut(s)	65, 957, 1094, 1442, 1505, 1917, 2352, 2612
BfmI	CTRYAG	1 cut(s)	2505
BfuI	GTATCC	2 cut(s)	436, 648
BisI	GCNGC	9 cut(s)	38, 112, 593, 777, 1656, 1832, 2061, 2568, 2596
BlsI	GCNGC	9 cut(s)	39, 113, 594, 778, 1657, 1833, 2062, 2569, 2597
Bme1390I	CCNGG	9 cut(s)	77, 505, 941, 1409, 1680, 2199, 2241, 2249, 2470
Bme18I	GGWCC	2 cut(s)	573, 1358
BmeRI	GACNNNNNGTC	3 cut(s)	1070, 1267, 1375
BmeT110I	CYCGRG	1 cut(s)	1694
BmgT120I	GGNCC	3 cut(s)	573, 1358, 2251
BmiI	GGNNCC	7 cut(s)	502, 510, 574, 669, 746, 822, 2253
BmrFI	CCNGG	9 cut(s)	77, 505, 941, 1409, 1680, 2199, 2241, 2249, 2470
BmrI	ACTGGG	2 cut(s)	253, 1047
BmsI	GCATC	4 cut(s)	162, 764, 823, 2649
BmuI	ACTGGG	2 cut(s)	253, 1047
BpiI	GAAGAC	1 cut(s)	2044
BpmI	CTGGAG	3 cut(s)	1430, 1629, 2181
Bpu10I	CCTNAGC	1 cut(s)	2591
BpuEI	CTTGAG	4 cut(s)	1088, 1718, 1800, 2342
BpuMI	CCSGG	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	6 cut(s)	75, 504, 576, 925, 1257, 1678
BsaWI	WCCGGW	2 cut(s)	188, 1366
BsaXI	ACNNNNNCTCC	4 cut(s)	247, 277, 485, 515
Bsc4I	CCNNNNNNNGG	9 cut(s)	76, 245, 1408, 1571, 1679, 1756, 2204, 2520, 2673
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	5 cut(s)	248, 593, 1053, 2338, 2525
Bse3DI	GCAATG	2 cut(s)	1323, 2542
Bse8I	GATNNNNATC	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	1366
BseBI	CCWGG	8 cut(s)	77, 941, 1409, 1680, 2199, 2241, 2249, 2470
BseDI	CCNNGG	6 cut(s)	75, 504, 576, 925, 1257, 1678
BseGI	GGATG	8 cut(s)	24, 85, 450, 551, 685, 713, 1036, 1123
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	9 cut(s)	76, 245, 1408, 1571, 1679, 1756, 2204, 2520, 2673
BseMI	GCAATG	2 cut(s)	1323, 2542
BseMII	CTCAG	4 cut(s)	1716, 2016, 2247, 2605
BseNI	ACTGG	5 cut(s)	248, 593, 1053, 2338, 2525
BseRI	GAGGAG	1 cut(s)	1017
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	7 cut(s)	24, 763, 1642, 1818, 2047, 2579, 2607
BseYI	CCCAGC	1 cut(s)	2231
BsgI	GTGCAG	1 cut(s)	2046
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	8 cut(s)	114, 538, 1212, 1976, 2178, 2252, 2513, 2524
BshNI	GGYRCC	1 cut(s)	744
BshTI	ACCGGT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	773
BsiHKCI	CYCGRG	1 cut(s)	1694
BsiSI	CCGG	5 cut(s)	189, 504, 1367, 1509, 1584
BslFI	GGGAC	5 cut(s)	320, 443, 2221, 2248, 2649
BslI	CCNNNNNNNGG	9 cut(s)	76, 245, 1408, 1571, 1679, 1756, 2204, 2520, 2673
BsmAI	GTCTC	4 cut(s)	1190, 1383, 2406, 2640
BsmFI	GGGAC	5 cut(s)	320, 443, 2221, 2248, 2649
BsmI	GAATGC	1 cut(s)	912
BsnI	GGCC	8 cut(s)	114, 538, 1212, 1976, 2178, 2252, 2513, 2524
BsoBI	CYCGRG	1 cut(s)	1694
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp13I	TCCGGA	1 cut(s)	1366
Bsp19I	CCATGG	1 cut(s)	925
BspACI	CCGC	2 cut(s)	111, 592
BspANI	GGCC	8 cut(s)	114, 538, 1212, 1976, 2178, 2252, 2513, 2524
BspCNI	CTCAG	4 cut(s)	1717, 2015, 2248, 2604
BspEI	TCCGGA	1 cut(s)	1366
BspHI	TCATGA	2 cut(s)	765, 2529
BspLI	GGNNCC	7 cut(s)	502, 510, 574, 669, 746, 822, 2253
BspMAI	CTGCAG	1 cut(s)	2509
BspPI	GGATC	9 cut(s)	662, 675, 815, 828, 1172, 1690, 1723, 2101, 2426
BspT107I	GGYRCC	1 cut(s)	744
BsrDI	GCAATG	2 cut(s)	1323, 2542
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	5 cut(s)	248, 593, 1053, 2338, 2525
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	6 cut(s)	75, 504, 576, 925, 1257, 1678
BssNAI	GTATAC	1 cut(s)	969
BssT1I	CCWWGG	3 cut(s)	576, 925, 1257
Bst1107I	GTATAC	1 cut(s)	969
Bst2UI	CCWGG	8 cut(s)	77, 941, 1409, 1680, 2199, 2241, 2249, 2470
Bst4CI	ACNGT	3 cut(s)	721, 1786, 2423
Bst6I	CTCTTC	2 cut(s)	1457, 2282
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	1992, 2515
BstDEI	CTNAG	5 cut(s)	1725, 2002, 2256, 2591, 2668
BstDSI	CCRYGG	1 cut(s)	925
BstENI	CCTNNNNNAGG	1 cut(s)	2671
BstF5I	GGATG	8 cut(s)	24, 85, 450, 551, 685, 713, 1036, 1123
BstHHI	GCGC	1 cut(s)	37
BstMAI	GTCTC	4 cut(s)	1190, 1383, 2406, 2640
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 108, 208, 2057, 2474
BstNI	CCWGG	8 cut(s)	77, 941, 1409, 1680, 2199, 2241, 2249, 2470
BstNSI	RCATGY	4 cut(s)	482, 865, 1652, 2499
BstSCI	CCNGG	9 cut(s)	75, 503, 939, 1407, 1678, 2197, 2239, 2247, 2468
BstSFI	CTRYAG	1 cut(s)	2505
BstV1I	GCAGC	7 cut(s)	24, 763, 1642, 1818, 2047, 2579, 2607
BstV2I	GAAGAC	1 cut(s)	2044
BstX2I	RGATCY	4 cut(s)	667, 820, 1177, 1728
BstXI	CCANNNNNNTGG	1 cut(s)	2629
BstYI	RGATCY	4 cut(s)	667, 820, 1177, 1728
BstZ17I	GTATAC	1 cut(s)	969
BstZI	CGGCCG	1 cut(s)	112
BsuI	GTATCC	2 cut(s)	436, 648
BsuRI	GGCC	8 cut(s)	114, 538, 1212, 1976, 2178, 2252, 2513, 2524
BtgI	CCRYGG	1 cut(s)	925
BtsCI	GGATG	8 cut(s)	24, 85, 450, 551, 685, 713, 1036, 1123
BtsIMutI	CAGTG	5 cut(s)	135, 414, 1079, 1692, 2331
Cac8I	GCNNGC	2 cut(s)	1992, 2515
CaiI	CAGNNNCTG	2 cut(s)	279, 2060
CciI	TCATGA	2 cut(s)	765, 2529
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	573, 1358, 2251
CseI	GACGC	1 cut(s)	2651
Csp6I	GTAC	5 cut(s)	745, 913, 1969, 2260, 2315
CspAI	ACCGGT	1 cut(s)	188
CviQI	GTAC	5 cut(s)	745, 913, 1969, 2260, 2315
DdeI	CTNAG	5 cut(s)	1725, 2002, 2256, 2591, 2668
DraI	TTTAAA	1 cut(s)	1395
DriI	GACNNNNNGTC	3 cut(s)	1070, 1267, 1375
EaeI	YGGCCR	2 cut(s)	112, 1974
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	1457, 2282
Eam1105I	GACNNNNNGTC	3 cut(s)	1070, 1267, 1375
EarI	CTCTTC	2 cut(s)	1457, 2282
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	3 cut(s)	576, 925, 1257
Eco147I	AGGCCT	2 cut(s)	538, 1212
Eco47I	GGWCC	2 cut(s)	573, 1358
Eco52I	CGGCCG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	1694
EcoNI	CCTNNNNNAGG	1 cut(s)	2671
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	1088
EcoRII	CCWGG	8 cut(s)	75, 939, 1407, 1678, 2197, 2239, 2247, 2468
EcoT14I	CCWWGG	3 cut(s)	576, 925, 1257
ErhI	CCWWGG	3 cut(s)	576, 925, 1257
FaqI	GGGAC	5 cut(s)	320, 443, 2221, 2248, 2649
FbaI	TGATCA	2 cut(s)	82, 318
FblI	GTMKAC	3 cut(s)	723, 968, 1074
Fnu4HI	GCNGC	9 cut(s)	38, 112, 593, 777, 1656, 1832, 2061, 2568, 2596
FokI	GGATG	8 cut(s)	11, 92, 437, 538, 692, 700, 1043, 1130
Fsp4HI	GCNGC	9 cut(s)	38, 112, 593, 777, 1656, 1832, 2061, 2568, 2596
FspBI	CTAG	8 cut(s)	65, 957, 1094, 1442, 1505, 1917, 2352, 2612
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	9 cut(s)	38, 112, 593, 777, 1656, 1832, 2061, 2568, 2596
GsaI	CCCAGC	1 cut(s)	2235
GsuI	CTGGAG	3 cut(s)	1430, 1629, 2181
HaeIII	GGCC	8 cut(s)	114, 538, 1212, 1976, 2178, 2252, 2513, 2524
HapII	CCGG	5 cut(s)	189, 504, 1367, 1509, 1584
HgaI	GACGC	1 cut(s)	2651
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	5 cut(s)	685, 699, 724, 2339, 2461
HindII	GTYRAC	5 cut(s)	685, 699, 724, 2339, 2461
HpaI	GTTAAC	1 cut(s)	699
HpaII	CCGG	5 cut(s)	189, 504, 1367, 1509, 1584
HphI	GGTGA	5 cut(s)	203, 502, 1830, 2213, 2375
Hpy188I	TCNGA	9 cut(s)	169, 323, 467, 1726, 2005, 2017, 2170, 2436, 2583
Hpy99I	CGWCG	1 cut(s)	1273
HpyAV	CCTTC	6 cut(s)	260, 389, 406, 1055, 1202, 1452
HpyCH4III	ACNGT	3 cut(s)	721, 1786, 2423
HpyCH4IV	ACGT	1 cut(s)	1137
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 108, 208, 2057, 2474
HpyF3I	CTNAG	5 cut(s)	1725, 2002, 2256, 2591, 2668
HpySE526I	ACGT	1 cut(s)	1137
HspAI	GCGC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	1366
KpnI	GGTACC	1 cut(s)	748
Ksp22I	TGATCA	2 cut(s)	82, 318
KspAI	GTTAAC	1 cut(s)	699
LmnI	GCTCC	6 cut(s)	255, 506, 891, 1574, 1610, 2200
Lsp1109I	GCAGC	7 cut(s)	24, 763, 1642, 1818, 2047, 2579, 2607
LweI	GCATC	4 cut(s)	162, 764, 823, 2649
MaeI	CTAG	8 cut(s)	65, 957, 1094, 1442, 1505, 1917, 2352, 2612
MaeII	ACGT	1 cut(s)	1137
MaeIII	GTNAC	4 cut(s)	295, 959, 1490, 2218
MboII	GAAGA	9 cut(s)	1474, 1546, 1549, 1552, 1555, 1558, 1877, 2049, 2299
MfeI	CAATTG	2 cut(s)	759, 1382
MflI	RGATCY	4 cut(s)	667, 820, 1177, 1728
MhlI	GDGCHC	1 cut(s)	773
MlsI	TGGCCA	1 cut(s)	1976
MluNI	TGGCCA	1 cut(s)	1976
MlyI	GAGTC	6 cut(s)	908, 953, 1232, 1440, 2203, 2230
MmeI	TCCRAC	2 cut(s)	584, 1906
Mox20I	TGGCCA	1 cut(s)	1976
MroI	TCCGGA	1 cut(s)	1366
MroXI	GAANNNNTTC	2 cut(s)	1088, 1252
MscI	TGGCCA	1 cut(s)	1976
MseI	TTAA	6 cut(s)	533, 585, 698, 990, 1280, 1394
MslI	CAYNNNNRTG	4 cut(s)	2115, 2627, 2654, 2657
Msp20I	TGGCCA	1 cut(s)	1976
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	5 cut(s)	189, 504, 1367, 1509, 1584
MspR9I	CCNGG	9 cut(s)	77, 505, 941, 1409, 1680, 2199, 2241, 2249, 2470
MunI	CAATTG	2 cut(s)	759, 1382
Mva1269I	GAATGC	1 cut(s)	912
MvaI	CCWGG	8 cut(s)	77, 941, 1409, 1680, 2199, 2241, 2249, 2470
MwoI	GCNNNNNNNGC	5 cut(s)	99, 108, 208, 2057, 2474
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	925
NlaIV	GGNNCC	7 cut(s)	502, 510, 574, 669, 746, 822, 2253
NmuCI	GTSAC	1 cut(s)	1490
NspI	RCATGY	4 cut(s)	482, 865, 1652, 2499
PaeR7I	CTCGAG	1 cut(s)	1694
PagI	TCATGA	2 cut(s)	765, 2529
PceI	AGGCCT	2 cut(s)	538, 1212
PciI	ACATGT	2 cut(s)	478, 1648
PctI	GAATGC	1 cut(s)	912
PdmI	GAANNNNTTC	2 cut(s)	1088, 1252
PfeI	GAWTC	4 cut(s)	270, 404, 1248, 1517
PflMI	CCANNNNNTGG	2 cut(s)	1571, 2204
PfoI	TCCNGGA	1 cut(s)	939
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	9 cut(s)	39, 113, 594, 778, 1657, 1833, 2062, 2569, 2597
PleI	GAGTC	6 cut(s)	907, 952, 1232, 1440, 2203, 2230
PpsI	GAGTC	6 cut(s)	907, 952, 1232, 1440, 2203, 2230
PpuMI	RGGWCCY	1 cut(s)	573
PscI	ACATGT	2 cut(s)	478, 1648
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	8 cut(s)	75, 939, 1407, 1678, 2197, 2239, 2247, 2468
PspFI	CCCAGC	1 cut(s)	2231
PspGI	CCWGG	8 cut(s)	75, 939, 1407, 1678, 2197, 2239, 2247, 2468
PspN4I	GGNNCC	7 cut(s)	502, 510, 574, 669, 746, 822, 2253
PspPI	GGNCC	3 cut(s)	573, 1358, 2251
PspPPI	RGGWCCY	1 cut(s)	573
PspXI	VCTCGAGB	1 cut(s)	1694
PstI	CTGCAG	1 cut(s)	2509
PstNI	CAGNNNCTG	2 cut(s)	279, 2060
PsuI	RGATCY	4 cut(s)	667, 820, 1177, 1728
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	5 cut(s)	746, 914, 1970, 2261, 2316
RsaNI	GTAC	5 cut(s)	745, 913, 1969, 2260, 2315
RseI	CAYNNNNRTG	4 cut(s)	2115, 2627, 2654, 2657
SalI	GTCGAC	1 cut(s)	722
SaqAI	TTAA	6 cut(s)	533, 585, 698, 990, 1280, 1394
SatI	GCNGC	9 cut(s)	38, 112, 593, 777, 1656, 1832, 2061, 2568, 2596
Sau96I	GGNCC	3 cut(s)	573, 1358, 2251
SchI	GAGTC	6 cut(s)	908, 953, 1232, 1440, 2203, 2230
ScrFI	CCNGG	9 cut(s)	77, 505, 941, 1409, 1680, 2199, 2241, 2249, 2470
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	4 cut(s)	162, 764, 823, 2649
SfcI	CTRYAG	1 cut(s)	2505
Sfr274I	CTCGAG	1 cut(s)	1694
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	573, 1358
SlaI	CTCGAG	1 cut(s)	1694
SmiI	ATTTAAAT	1 cut(s)	1395
SmiMI	CAYNNNNRTG	4 cut(s)	2115, 2627, 2654, 2657
SmlI	CTYRAG	5 cut(s)	1067, 1694, 1733, 1815, 2321
SmoI	CTYRAG	5 cut(s)	1067, 1694, 1733, 1815, 2321
SseBI	AGGCCT	2 cut(s)	538, 1212
SsiI	CCGC	2 cut(s)	111, 592
SspI	AATATT	3 cut(s)	314, 851, 1329
SspMI	CTAG	8 cut(s)	65, 957, 1094, 1442, 1505, 1917, 2352, 2612
StuI	AGGCCT	2 cut(s)	538, 1212
StyD4I	CCNGG	9 cut(s)	75, 503, 939, 1407, 1678, 2197, 2239, 2247, 2468
StyI	CCWWGG	3 cut(s)	576, 925, 1257
SwaI	ATTTAAAT	1 cut(s)	1395
TaaI	ACNGT	3 cut(s)	721, 1786, 2423
TaiI	ACGT	1 cut(s)	1140
TaqI	TCGA	3 cut(s)	723, 1271, 1695
TatI	WGTACW	3 cut(s)	912, 1968, 2314
TauI	GCSGC	2 cut(s)	114, 595
TfiI	GAWTC	4 cut(s)	270, 404, 1248, 1517
Tru1I	TTAA	6 cut(s)	533, 585, 698, 990, 1280, 1394
Tru9I	TTAA	6 cut(s)	533, 585, 698, 990, 1280, 1394
TscAI	CASTG	5 cut(s)	142, 414, 1086, 1692, 2338
TseFI	GTSAC	1 cut(s)	1490
TseI	GCWGC	7 cut(s)	37, 776, 1655, 1831, 2060, 2567, 2595
Tsp45I	GTSAC	1 cut(s)	1490
TspGWI	ACGGA	2 cut(s)	501, 2049
TspRI	CASTG	5 cut(s)	142, 414, 1086, 1692, 2338
Van91I	CCANNNNNTGG	2 cut(s)	1571, 2204
VpaK11BI	GGWCC	2 cut(s)	573, 1358
XagI	CCTNNNNNAGG	1 cut(s)	2671
XapI	RAATTY	6 cut(s)	124, 394, 626, 808, 1088, 1587
XbaI	TCTAGA	1 cut(s)	2351
XceI	RCATGY	4 cut(s)	482, 865, 1652, 2499
XhoI	CTCGAG	1 cut(s)	1694
XmiI	GTMKAC	3 cut(s)	723, 968, 1074
XmnI	GAANNNNTTC	2 cut(s)	1088, 1252
XspI	CTAG	8 cut(s)	65, 957, 1094, 1442, 1505, 1917, 2352, 2612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.