Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017400

Physical Location & Seq

Genomic Coordinates Reverse (-)

63631472 .. 63632137

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATCGATCAAAAGAAAATGCTTCCCCATGGGGTCATAAATGCCGTAGCACATGCGGTACGATGTCCTTTCAAGCAATGTCAGTACCCGAATTGTCGTCTGGTCTATGCGCTTCTCCTTCATGGAAGTCGATGCCAAGTTCGTGTACCAGGAGGTTGTCTTCTCTGTAAGAAGATGTGGCTTCTCCTTTATCACCATGCTCTGTCTTGCAAAGAAGATGAGTGCTATGTGCCCCGTTGCAGAGATATAAGAGAAAAAATGAGGAAGAGGCTGCAGGCTGAGAGAGATGATGAGATTCATAACAAGGCTGCAGTACGGGCTGCACCAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004402 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009791 GO:0009908 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0061733 GO:0071704 GO:0071840 GO:0090567 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

9.39

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-TAZ	PF02135	13 - 80	1.2e-10	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017400)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015400_v2.0.a1 Prupe.7G015400_v2.0.a1
pyrus_communis	pycom17g15050
rosa_chinensis	RchiOBHm_Chr2g0149711
rosa_laevigata	RLG00000020441
rosa_multiflora	Rmu_co8319157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097770
rosa_rugosa	Rorug02G0415400 Rorug02G0415500
rosa_samantha	Rh2AG475300 Rh2BG486700 Rh2CG460800
rosa_wichuraiana	Rw2G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AfaI	GTAC	4 cut(s)	60, 86, 147, 315
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	148, 325
ApeKI	GCWGC	3 cut(s)	271, 308, 320
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	258, 295, 307
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	150, 327
BfmI	CTRYAG	2 cut(s)	272, 309
BisI	GCNGC	3 cut(s)	272, 309, 321
BlsI	GCNGC	3 cut(s)	273, 310, 322
Bme1390I	CCNGG	2 cut(s)	150, 327
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	150, 327
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	150, 327
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	258, 295, 307
BsgI	GTGCAG	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	3, 7
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	2 cut(s)	276, 313
BsrDI	GCAATG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	3, 7
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	150, 327
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	6, 10
BstMBI	GATC	2 cut(s)	3, 7
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 329
BstNI	CCWGG	2 cut(s)	150, 327
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	148, 325
BstSFI	CTRYAG	2 cut(s)	272, 309
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	258, 295, 307
BstV2I	GAAGAC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	4 cut(s)	59, 85, 146, 314
CviAII	CATG	4 cut(s)	29, 53, 122, 197
CviJI	RGCY	6 cut(s)	181, 271, 278, 308, 320, 332
CviKI_1	RGCY	6 cut(s)	181, 271, 278, 308, 320, 332
CviQI	GTAC	4 cut(s)	59, 85, 146, 314
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	5, 9
DpnII	GATC	2 cut(s)	3, 7
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	148, 325
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	32, 56, 125, 200
FaiI	YATR	9 cut(s)	30, 38, 54, 108, 123, 198, 228, 248, 300
FatI	CATG	4 cut(s)	28, 52, 121, 196
Fnu4HI	GCNGC	3 cut(s)	272, 309, 321
Fsp4HI	GCNGC	3 cut(s)	272, 309, 321
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	272, 309, 321
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	32, 56, 125, 200
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	210, 240, 274, 311, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 329
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	32, 56, 125, 200
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	3, 7
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	5 cut(s)	86, 135, 162, 260, 312
Lsp1109I	GCAGC	3 cut(s)	258, 295, 307
LweI	GCATC	1 cut(s)	122
MalI	GATC	2 cut(s)	5, 9
MboI	GATC	2 cut(s)	3, 7
MboII	GAAGA	4 cut(s)	152, 184, 227, 277
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	3 cut(s)	146, 255, 261
MspR9I	CCNGG	2 cut(s)	150, 327
MvaI	CCWGG	2 cut(s)	150, 327
MwoI	GCNNNNNNNGC	2 cut(s)	317, 329
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	3, 7
NlaIII	CATG	4 cut(s)	32, 56, 125, 200
NlaIV	GGNNCC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	273, 310, 322
Psp6I	CCWGG	2 cut(s)	148, 325
PspGI	CCWGG	2 cut(s)	148, 325
PspN4I	GGNNCC	1 cut(s)	331
PstI	CTGCAG	2 cut(s)	276, 313
RsaI	GTAC	4 cut(s)	60, 86, 147, 315
RsaNI	GTAC	4 cut(s)	59, 85, 146, 314
SatI	GCNGC	3 cut(s)	272, 309, 321
Sau3AI	GATC	2 cut(s)	3, 7
ScrFI	CCNGG	2 cut(s)	150, 327
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	2 cut(s)	272, 309
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	148, 325
StyI	CCWWGG	1 cut(s)	28
TaqI	TCGA	2 cut(s)	6, 130
TasI	AATT	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	295
TseI	GCWGC	3 cut(s)	271, 308, 320
TspDTI	ATGAA	2 cut(s)	110, 287
XceI	RCATGY	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.