Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017400

Physical Location & Seq

Genomic Coordinates Reverse (-)

69408453 .. 69416340

Gene Structure 7888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG475300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACTGGTTTCCTCGTTGTTGTCAGCTTCCTTGGACTTTTTAGTCTTGTTCCGCTTCGCAAGGTTATGGTTATGGATTACAAACTTACATACCCCAGTGGGACTGCCACAGCAATGTTGATCAATAGCTTTCACACTAAAAGTGGTGCAGAGCTTGCCGGGAAGCAAGTGCAATGTCTTGGAAAGGATCTAAGCATGAGTTTAATTTGGAGCTGCTTTAAGTGGTTCTTCAGTGTTTGGTTCCTTCATTTTGTTGTGAGCAGCTGTTTGATTGTTAACAGTCCGATTAGGTTGTGTTTTGAAACTGCAGATTGTGTTGCTTTCTCTGTGTCTATTTACTTTCAGTACAAGTTTGATGTCATTAGTAGATGCTGCTGGAAAATGCTTCCCCATGGGGTCATAAATGCCGTAGCACATGCGGTACGATGTCCTTTCAAGCAATGTCAGTACCCCAATTGTCGTCGGGTCTATGCGCTTCTCCTTCATGGAAGTCGATGCCAAGTTCGTGTACCAGGAGGTTGTCTTCTCTGTAAGAAGATGTGGCTTCTCCTTTATCACCATGCTCTGTCTTGCAAAGAAGATGAGTGCTATGTGCCCCGTTGCAGAGATATAAGAGAAAAAATGAGGAAGAGGCTGCAGGCTGAGAAAGATGATGAGATTCATAACAAGGCTGCAGTACGGGCTGCACCAGGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

232

Amino Acids

26.47

Weight (kDa)

9.26

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	4 - 91	3.3e-15	OPT oligopeptide transporter protein
zf-TAZ	PF02135	134 - 201	4.7e-10	TAZ zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017400)

Species	Orthologous Gene IDs
prunus_persica	Prupe.7G015400_v2.0.a1 Prupe.7G015400_v2.0.a1
pyrus_communis	pycom17g15050
rosa_chinensis	RchiOBHm_Chr2g0149711
rosa_laevigata	RLG00000020441
rosa_multiflora	Rmu_co8319157.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097770
rosa_rugosa	Rorug02G0415400 Rorug02G0415500
rosa_samantha	Rh2AG475300 Rh2BG486700 Rh2CG460800
rosa_wichuraiana	Rw2G038730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	42
AciI	CCGC	2 cut(s)	53, 419
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	214
AfaI	GTAC	5 cut(s)	347, 423, 449, 510, 678
AgsI	TTSAA	2 cut(s)	302, 436
AjnI	CCWGG	2 cut(s)	511, 688
AluBI	AGCT	5 cut(s)	27, 129, 154, 213, 264
AluI	AGCT	5 cut(s)	27, 129, 154, 213, 264
AlwI	GGATC	1 cut(s)	195
ApeKI	GCWGC	6 cut(s)	213, 261, 372, 634, 671, 683
AspLEI	GCGC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	6 cut(s)	200, 273, 359, 621, 658, 670
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	2 cut(s)	513, 690
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	160
BfmI	CTRYAG	3 cut(s)	306, 635, 672
BisI	GCNGC	6 cut(s)	214, 262, 373, 635, 672, 684
BlsI	GCNGC	6 cut(s)	215, 263, 374, 636, 673, 685
Bme1390I	CCNGG	3 cut(s)	160, 513, 690
BmiI	GGNNCC	2 cut(s)	242, 694
BmrFI	CCNGG	3 cut(s)	160, 513, 690
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	359, 485
BmuI	ACTGGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	31, 391
Bse1I	ACTGG	2 cut(s)	10, 96
Bse3DI	GCAATG	3 cut(s)	120, 179, 446
BseBI	CCWGG	2 cut(s)	513, 690
BseDI	CCNNGG	2 cut(s)	31, 391
BseMI	GCAATG	3 cut(s)	120, 179, 446
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	10, 96
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	6 cut(s)	200, 273, 359, 621, 658, 670
BsgI	GTGCAG	2 cut(s)	168, 669
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	2 cut(s)	120, 187
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	2 cut(s)	53, 419
BspCNI	CTCAG	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	242, 694
BspMAI	CTGCAG	3 cut(s)	310, 639, 676
BspPI	GGATC	1 cut(s)	195
BsrDI	GCAATG	3 cut(s)	120, 179, 446
BsrI	ACTGG	2 cut(s)	10, 96
BssECI	CCNNGG	2 cut(s)	31, 391
BssMI	GATC	2 cut(s)	120, 187
BssT1I	CCWWGG	2 cut(s)	31, 391
Bst2UI	CCWGG	2 cut(s)	513, 690
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	156, 639
BstDEI	CTNAG	2 cut(s)	191, 642
BstDSI	CCRYGG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	123, 190
BstMBI	GATC	2 cut(s)	120, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 680, 692
BstNI	CCWGG	2 cut(s)	513, 690
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	158, 511, 688
BstSFI	CTRYAG	3 cut(s)	306, 635, 672
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	6 cut(s)	200, 273, 359, 621, 658, 670
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	103, 238
Cac8I	GCNNGC	2 cut(s)	156, 639
CfoI	GCGC	1 cut(s)	475
Csp6I	GTAC	5 cut(s)	346, 422, 448, 509, 677
CviAII	CATG	5 cut(s)	196, 392, 416, 485, 560
CviQI	GTAC	5 cut(s)	346, 422, 448, 509, 677
DdeI	CTNAG	2 cut(s)	191, 642
DpnI	GATC	2 cut(s)	122, 189
DpnII	GATC	2 cut(s)	120, 187
DrdI	GACNNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	623
Eco130I	CCWWGG	2 cut(s)	31, 391
Eco57I	CTGAAG	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	511, 688
EcoT14I	CCWWGG	2 cut(s)	31, 391
ErhI	CCWWGG	2 cut(s)	31, 391
FaeI	CATG	5 cut(s)	199, 395, 419, 488, 563
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	5 cut(s)	195, 391, 415, 484, 559
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	214, 262, 373, 635, 672, 684
Fsp4HI	GCNGC	6 cut(s)	214, 262, 373, 635, 672, 684
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	6 cut(s)	214, 262, 373, 635, 672, 684
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	5 cut(s)	199, 395, 419, 488, 563
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	658
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	277, 509
Hpy188I	TCNGA	1 cut(s)	285
Hpy8I	GTNNAC	2 cut(s)	277, 509
Hpy99I	CGWCG	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	254, 491
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	8 cut(s)	149, 172, 308, 573, 603, 637, 674, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 680, 692
HpyF3I	CTNAG	2 cut(s)	191, 642
Hsp92II	CATG	5 cut(s)	199, 395, 419, 488, 563
HspAI	GCGC	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	120, 187
LmnI	GCTCC	2 cut(s)	210, 692
LpnPI	CCDG	7 cut(s)	109, 172, 361, 498, 525, 623, 675
Lsp1109I	GCAGC	6 cut(s)	200, 273, 359, 621, 658, 670
LweI	GCATC	2 cut(s)	359, 485
MalI	GATC	2 cut(s)	122, 189
MboI	GATC	2 cut(s)	120, 187
MboII	GAAGA	5 cut(s)	220, 515, 547, 590, 640
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	2 cut(s)	204, 454
MnlI	CCTC	4 cut(s)	23, 509, 618, 624
MseI	TTAA	3 cut(s)	203, 219, 276
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	3 cut(s)	160, 513, 690
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	513, 690
MwoI	GCNNNNNNNGC	3 cut(s)	155, 680, 692
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	2 cut(s)	120, 187
NlaIII	CATG	5 cut(s)	199, 395, 419, 488, 563
NlaIV	GGNNCC	2 cut(s)	242, 694
NspI	RCATGY	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	6 cut(s)	215, 263, 374, 636, 673, 685
Psp6I	CCWGG	2 cut(s)	511, 688
PspGI	CCWGG	2 cut(s)	511, 688
PspN4I	GGNNCC	2 cut(s)	242, 694
PstI	CTGCAG	3 cut(s)	310, 639, 676
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	5 cut(s)	347, 423, 449, 510, 678
RsaNI	GTAC	5 cut(s)	346, 422, 448, 509, 677
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	203, 219, 276
SatI	GCNGC	6 cut(s)	214, 262, 373, 635, 672, 684
Sau3AI	GATC	2 cut(s)	120, 187
ScrFI	CCNGG	3 cut(s)	160, 513, 690
SduI	GDGCHC	1 cut(s)	597
SetI	ASST	8 cut(s)	29, 66, 131, 156, 215, 266, 293, 520
SfaNI	GCATC	2 cut(s)	359, 485
SfcI	CTRYAG	3 cut(s)	306, 635, 672
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	204, 454
SsiI	CCGC	2 cut(s)	53, 419
StyD4I	CCNGG	3 cut(s)	158, 511, 688
StyI	CCWWGG	2 cut(s)	31, 391
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	493
TasI	AATT	2 cut(s)	204, 454
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	3 cut(s)	203, 219, 276
Tru9I	TTAA	3 cut(s)	203, 219, 276
TscAI	CASTG	2 cut(s)	103, 238
TseI	GCWGC	6 cut(s)	213, 261, 372, 634, 671, 683
TspDTI	ATGAA	3 cut(s)	236, 473, 650
TspRI	CASTG	2 cut(s)	103, 238
XceI	RCATGY	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.