Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014934

Physical Location & Seq

Genomic Coordinates Reverse (-)

14236753 .. 14238604

Gene Structure 1852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAGTCTCAAAAAACTAGCATTCAAGTTCTTCACCCCTAGTTGTTTCAACGCCAACAAACCAATCATAGACAAAAAATCCCAAACGTCGAAAGAAATCTCATCGCGGAGATTGTCACTGTCGGATTTGAGTAACTCATCGGTGTGTACAGTCCTCAGTGATCTGTCAAATTCACTTATTGGATCAAACCTTCATATTTTTTCACACAATGAGCTTAAAAAGATTACACAAAGTTTCTCCAAGAGCAACTATCTCGGTGAGGGTGGGTTCGGGCAGGTCTACAAGGGGTTCATTGATGACAAGCTTAGGCCTGGACTGGAAGCTCAGCCTGTTGCTGTTAAGGTCTTGGATTTAGATGGCAAACAAGGACATAGGGAGTGGCTGGCTGAAGTGATTTTTCTTGGGCAACTGAAGCACCCGAATCTTGTTAAATTGATCGGGTACTGCTGCGAAGACGAATACAGGCTTCTGGTGTATGAGTACATGGAGAGAGGCAACTTAGATCACCAGCTATTCAAACGTTATGGTGGAACCCTACCTTGGCTAACAAGAATCAAGATAGCAATTGGAGCTGCAAAAGGCCTCAGTTGCCTCCATGAGGAAGAAAAGTCAGTCATATACCGCGATTTTAAGACTTCAAACATCTTACTGGACTCGGATTACACTGCTAAGCTGTCTGATTTCGGTCTAGCCATAGATGGCCCAGAAGGAGATGAAACACACATTACAACGCGTGTCATGGGAACTCATGGCTACGCAGCTCCAGAATATGTCAAGACAGGTCATTTAACAACGATGAGTGATGTATATAGCTTTGGCGTAGTTCTTTTGGAGCTACTAACTGGTAGAAGGTCCGTGGATGATTGCCGTCATGGTAGAGAACAGAACCTAGTGGAGCGGTTCAAACCTTTTCTGAAGGACTCACATAAACTTGACCGCATGATGGACCCTAGGCTCGAGGGTCAGTACTCGACCATAGGGGCAAGAAAAGCTGCTGCATTGGCTCACCAATGCCTGAGCCACAACCCCAAGTGTAGACCAACAATGACCAGCGTTGTCAAGACCTTGGAACCTCTTATGGACTTGACTAATGACATTCCAATCGGACCCTTTGTGTACATTGTTCCGAATGAGGGAAAAAATAAAGTCGGTGAGCACAGGGTTGAACGAGAGGGGCGAGCTGACTCTGATGTGGTGAAAAATGAGAGCACAGGTGAAGAAAAATTGGTGGAAAAGAAAGCGAAGGGCCACCACAGGAGCCGAGAAGGTCATCGGTTTAGAAACCGGAATAAGTCATTGAGTTCTAGTACCGTTTATTGTGATACTGCTGTATATGGAGTTCTTGGAACTGGTTTTTACTCTCCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

457

Amino Acids

51.2

Weight (kDa)

8.9

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72540
fragaria_vesca	FvH4_6g34900
malus_domestica	MD09G1181400.v1.1 MD17G1167600.v1.1
prunus_persica	Prupe.3G039500_v2.0.a1
pyrus_communis	pycom09g09900 pycom17g15930
rosa_chinensis	RchiOBHm_Chr2g0145801
rosa_laevigata	RLG00000020168
rosa_multiflora	Rmu_sc0000473.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434760 Rroxscaffold_2G00100440
rosa_rugosa	Rorug02G0393300
rosa_samantha	Rh2AG447600 Rh2CG434500
rosa_wichuraiana	Rw2G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	898
AccI	GTMKAC	2 cut(s)	279, 1036
AccII	CGCG	3 cut(s)	106, 624, 733
AciI	CCGC	4 cut(s)	106, 622, 898, 937
AclI	AACGTT	1 cut(s)	520
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	3 cut(s)	408, 431, 935
AfaI	GTAC	6 cut(s)	148, 443, 482, 968, 1118, 1309
AfiI	CCNNNNNNNGG	4 cut(s)	540, 598, 943, 1133
AflIII	ACRYGT	1 cut(s)	731
AgsI	TTSAA	6 cut(s)	25, 49, 517, 639, 904, 1166
AjnI	CCWGG	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	523, 555
Alw21I	GWGCWC	2 cut(s)	1158, 1211
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	956
AoxI	GGCC	4 cut(s)	308, 580, 700, 1246
ApeKI	GCWGC	5 cut(s)	447, 572, 758, 992, 995
ApoI	RAATTY	1 cut(s)	169
AspA2I	CCTAGG	1 cut(s)	950
AspS9I	GGNCC	5 cut(s)	701, 852, 946, 1106, 1246
AsuHPI	GGTGA	7 cut(s)	25, 269, 497, 998, 1163, 1207, 1226
AvaI	CYCGRG	1 cut(s)	956
AvaII	GGWCC	3 cut(s)	852, 946, 1106
AvrII	CCTAGG	1 cut(s)	950
BaeI	ACNNNNGTAYC	2 cut(s)	1314, 1347
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	1158, 1211
BbvI	GCAGC	5 cut(s)	434, 559, 770, 979, 982
BccI	CCATC	3 cut(s)	350, 692, 937
BceAI	ACGGC	1 cut(s)	852
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	6 cut(s)	17, 39, 689, 890, 951, 1305
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	5 cut(s)	448, 573, 759, 993, 996
BlnI	CCTAGG	1 cut(s)	950
BlpI	GCTNAGC	2 cut(s)	324, 669
BlsI	GCNGC	5 cut(s)	449, 574, 760, 994, 997
BmcAI	AGTACT	1 cut(s)	968
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	3 cut(s)	852, 946, 1106
BmeT110I	CYCGRG	1 cut(s)	956
BmgT120I	GGNCC	5 cut(s)	701, 852, 946, 1106, 1246
BmiI	GGNNCC	5 cut(s)	532, 948, 1071, 1108, 1259
BmrFI	CCNGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	2 cut(s)	305, 1016
Bpu1102I	GCTNAGC	2 cut(s)	324, 669
BsaJI	CCNNGG	4 cut(s)	539, 855, 950, 1065
BsaWI	WCCGGW	1 cut(s)	1284
Bsc4I	CCNNNNNNNGG	4 cut(s)	540, 598, 943, 1133
Bse1I	ACTGG	4 cut(s)	321, 654, 847, 1354
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	4 cut(s)	539, 855, 950, 1065
BseGI	GGATG	1 cut(s)	865
BseLI	CCNNNNNNNGG	4 cut(s)	540, 598, 943, 1133
BseMII	CTCAG	4 cut(s)	169, 338, 598, 1007
BseNI	ACTGG	4 cut(s)	321, 654, 847, 1354
BseXI	GCAGC	5 cut(s)	434, 559, 770, 979, 982
Bsh1236I	CGCG	3 cut(s)	106, 624, 733
BshFI	GGCC	4 cut(s)	310, 582, 702, 1248
BsiHKAI	GWGCWC	2 cut(s)	1158, 1211
BsiHKCI	CYCGRG	1 cut(s)	956
BsiSI	CCGG	1 cut(s)	1285
BslI	CCNNNNNNNGG	4 cut(s)	540, 598, 943, 1133
BsmAI	GTCTC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	4 cut(s)	310, 582, 702, 1248
BsoBI	CYCGRG	1 cut(s)	956
Bsp1286I	GDGCHC	2 cut(s)	1158, 1211
Bsp1407I	TGTACA	2 cut(s)	146, 1116
Bsp143I	GATC	4 cut(s)	160, 182, 435, 502
Bsp1720I	GCTNAGC	2 cut(s)	324, 669
BspACI	CCGC	4 cut(s)	106, 622, 898, 937
BspANI	GGCC	4 cut(s)	310, 582, 702, 1248
BspCNI	CTCAG	4 cut(s)	168, 337, 597, 1008
BspFNI	CGCG	3 cut(s)	106, 624, 733
BspLI	GGNNCC	5 cut(s)	532, 948, 1071, 1108, 1259
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	898
BsrGI	TGTACA	2 cut(s)	146, 1116
BsrI	ACTGG	4 cut(s)	321, 654, 847, 1354
BssECI	CCNNGG	4 cut(s)	539, 855, 950, 1065
BssMI	GATC	4 cut(s)	160, 182, 435, 502
BssT1I	CCWWGG	3 cut(s)	539, 950, 1065
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	120, 151, 1312
BstAUI	TGTACA	2 cut(s)	146, 1116
BstC8I	GCNNGC	2 cut(s)	384, 1179
BstDEI	CTNAG	7 cut(s)	155, 305, 324, 499, 584, 669, 1016
BstDSI	CCRYGG	1 cut(s)	855
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	865
BstFNI	CGCG	3 cut(s)	106, 624, 733
BstKTI	GATC	4 cut(s)	163, 185, 438, 505
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	4 cut(s)	160, 182, 435, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	412, 569, 588, 989, 1001
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstUI	CGCG	3 cut(s)	106, 624, 733
BstV1I	GCAGC	5 cut(s)	434, 559, 770, 979, 982
BstV2I	GAAGAC	1 cut(s)	459
BsuRI	GGCC	4 cut(s)	310, 582, 702, 1248
BtgI	CCRYGG	1 cut(s)	855
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	865
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	116, 163, 663
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	384, 1179
Cfr13I	GGNCC	5 cut(s)	701, 852, 946, 1106, 1246
Csp6I	GTAC	6 cut(s)	147, 442, 481, 967, 1117, 1308
CviAII	CATG	6 cut(s)	484, 596, 739, 749, 872, 940
CviQI	GTAC	6 cut(s)	147, 442, 481, 967, 1117, 1308
DdeI	CTNAG	7 cut(s)	155, 305, 324, 499, 584, 669, 1016
DpnI	GATC	4 cut(s)	162, 184, 437, 504
DpnII	GATC	4 cut(s)	160, 182, 435, 502
Eco130I	CCWWGG	3 cut(s)	539, 950, 1065
Eco147I	AGGCCT	2 cut(s)	310, 582
Eco47I	GGWCC	3 cut(s)	852, 946, 1106
Eco57I	CTGAAG	3 cut(s)	408, 431, 935
Eco88I	CYCGRG	1 cut(s)	956
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	3 cut(s)	539, 950, 1065
ErhI	CCWWGG	3 cut(s)	539, 950, 1065
FaeI	CATG	6 cut(s)	487, 599, 742, 752, 875, 943
FatI	CATG	6 cut(s)	483, 595, 738, 748, 871, 939
FblI	GTMKAC	2 cut(s)	279, 1036
Fnu4HI	GCNGC	5 cut(s)	448, 573, 759, 993, 996
FokI	GGATG	1 cut(s)	872
Fsp4HI	GCNGC	5 cut(s)	448, 573, 759, 993, 996
FspBI	CTAG	6 cut(s)	17, 39, 689, 890, 951, 1305
GluI	GCNGC	5 cut(s)	448, 573, 759, 993, 996
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	4 cut(s)	310, 582, 702, 1248
HapII	CCGG	1 cut(s)	1285
Hin1II	CATG	6 cut(s)	487, 599, 742, 752, 875, 943
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	6 cut(s)	4, 421, 552, 653, 920, 1184
HpaII	CCGG	1 cut(s)	1285
HphI	GGTGA	7 cut(s)	25, 269, 497, 998, 1163, 1207, 1226
Hpy166II	GTNNAC	4 cut(s)	147, 280, 1037, 1117
Hpy188I	TCNGA	7 cut(s)	124, 658, 679, 915, 1106, 1128, 1189
Hpy188III	TCNNGA	4 cut(s)	556, 764, 775, 1060
Hpy8I	GTNNAC	4 cut(s)	147, 280, 1037, 1117
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	6 cut(s)	200, 701, 843, 910, 1237, 1259
HpyCH4III	ACNGT	3 cut(s)	120, 151, 1312
HpyCH4IV	ACGT	2 cut(s)	86, 520
HpyCH4V	TGCA	2 cut(s)	575, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	412, 569, 588, 989, 1001
HpyF3I	CTNAG	7 cut(s)	155, 305, 324, 499, 584, 669, 1016
HpySE526I	ACGT	2 cut(s)	86, 520
Hsp92II	CATG	6 cut(s)	487, 599, 742, 752, 875, 943
Kzo9I	GATC	4 cut(s)	160, 182, 435, 502
LmnI	GCTCC	5 cut(s)	569, 766, 832, 895, 1257
Lsp1109I	GCAGC	5 cut(s)	434, 559, 770, 979, 982
MaeI	CTAG	6 cut(s)	17, 39, 689, 890, 951, 1305
MaeII	ACGT	2 cut(s)	86, 520
MaeIII	GTNAC	2 cut(s)	114, 131
MalI	GATC	4 cut(s)	162, 184, 437, 504
MbiI	CCGCTC	1 cut(s)	898
MboI	GATC	4 cut(s)	160, 182, 435, 502
MboII	GAAGA	4 cut(s)	22, 464, 614, 1229
MfeI	CAATTG	1 cut(s)	564
MhlI	GDGCHC	2 cut(s)	1158, 1211
MluCI	AATT	4 cut(s)	169, 431, 564, 1223
MluI	ACGCGT	1 cut(s)	731
MlyI	GAGTC	4 cut(s)	13, 647, 914, 1178
MmeI	TCCRAC	1 cut(s)	102
MseI	TTAA	5 cut(s)	216, 339, 429, 630, 788
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	1 cut(s)	1285
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	3 cut(s)	106, 624, 733
MwoI	GCNNNNNNNGC	5 cut(s)	412, 569, 588, 989, 1001
NdeII	GATC	4 cut(s)	160, 182, 435, 502
NlaIII	CATG	6 cut(s)	487, 599, 742, 752, 875, 943
NlaIV	GGNNCC	5 cut(s)	532, 948, 1071, 1108, 1259
NmeAIII	GCCGAG	1 cut(s)	1286
NmuCI	GTSAC	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	956
PceI	AGGCCT	2 cut(s)	310, 582
PcsI	WCGNNNNNNNCGW	1 cut(s)	1174
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	421, 552
PkrI	GCNGC	5 cut(s)	449, 574, 760, 994, 997
PleI	GAGTC	4 cut(s)	12, 647, 914, 1178
PpsI	GAGTC	4 cut(s)	12, 647, 914, 1178
Psp1406I	AACGTT	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	5 cut(s)	532, 948, 1071, 1108, 1259
PspPI	GGNCC	5 cut(s)	701, 852, 946, 1106, 1246
PspXI	VCTCGAGB	1 cut(s)	956
PsrI	GAACNNNNNNTAC	2 cut(s)	1323, 1355
RsaI	GTAC	6 cut(s)	148, 443, 482, 968, 1118, 1309
RsaNI	GTAC	6 cut(s)	147, 442, 481, 967, 1117, 1308
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	5 cut(s)	216, 339, 429, 630, 788
SatI	GCNGC	5 cut(s)	448, 573, 759, 993, 996
Sau3AI	GATC	4 cut(s)	160, 182, 435, 502
Sau96I	GGNCC	5 cut(s)	701, 852, 946, 1106, 1246
ScaI	AGTACT	1 cut(s)	968
SchI	GAGTC	4 cut(s)	13, 647, 914, 1178
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	1158, 1211
Sfr274I	CTCGAG	1 cut(s)	956
SinI	GGWCC	3 cut(s)	852, 946, 1106
SlaI	CTCGAG	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	4 cut(s)	169, 431, 564, 1223
SseBI	AGGCCT	2 cut(s)	310, 582
SsiI	CCGC	4 cut(s)	106, 622, 898, 937
SspMI	CTAG	6 cut(s)	17, 39, 689, 890, 951, 1305
StuI	AGGCCT	2 cut(s)	310, 582
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	3 cut(s)	539, 950, 1065
TaaI	ACNGT	3 cut(s)	120, 151, 1312
TaiI	ACGT	2 cut(s)	89, 523
TaqI	TCGA	3 cut(s)	89, 957, 971
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	4 cut(s)	169, 431, 564, 1223
TatI	WGTACW	4 cut(s)	146, 480, 966, 1116
TfiI	GAWTC	2 cut(s)	421, 552
Tru1I	TTAA	5 cut(s)	216, 339, 429, 630, 788
Tru9I	TTAA	5 cut(s)	216, 339, 429, 630, 788
TscAI	CASTG	3 cut(s)	123, 163, 670
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	5 cut(s)	447, 572, 758, 992, 995
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	182, 280, 729
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	3 cut(s)	123, 163, 670
VpaK11BI	GGWCC	3 cut(s)	852, 946, 1106
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	956
XmaJI	CCTAGG	1 cut(s)	950
XmiI	GTMKAC	2 cut(s)	279, 1036
XspI	CTAG	6 cut(s)	17, 39, 689, 890, 951, 1305
ZrmI	AGTACT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.