Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014934

Physical Location & Seq

Genomic Coordinates Forward (+)

50393773 .. 50394393

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGAAGGGAAAGTTGATACGTCTCGATGATCGTTGGGTCTCCATCGCAATAGACAATCTAGACTCTTTCGGGGATGTTGGGTACCTAGACTTCAAGTTTCTCGATCAGGTCTTACCCCACTGCTCCAAAGACCAGTTGATTCACATCGAGAAGAGCACGAAAGATACAGACCTGACTCCGATCACTGATAAGCTCTGGAAGAAGATTTTCGAGAGAGAGTTCGGTGTCAAAGCCACAGATGAGGTGATCCAGAAGATGAAGATCAAGAAAGTGAGTTTCAAGTGGTCGGAGTTGTACCAGACCAAGTTGAAGAGAGTGGAAGAGGATGAGAAACAAGTGGGAGAAAGATTGAAGAGGCTGTATCAGAAAGAAGCTGCCAGGAAACAAAGCCGGCAAGTTAGGGTTTTGGACAAGCTTCCGCCTTCTTCGTCAAGCAATAAAAGAAGTGGTTCCACCAAAGAGAGCAAACTGATGAAAAAAGTGAGAAAAGAGTATCACAACTGTCTAGAGGTGAAAAATATTGAAGCTATGAAGATGAAGAGAAGTGCCAAGTGTTCTAGTCTCATCAAAAAGCCAAGAAACGACTATTCAAGCTATGAACGTGTTTTGAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

206

Amino Acids

24.34

Weight (kDa)

9.72

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elongin_A	PF06881	25 - 133	4.6e-22	RNA polymerase II transcription factor SIII (Elongin) subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72540
fragaria_vesca	FvH4_6g34900
malus_domestica	MD09G1181400.v1.1 MD17G1167600.v1.1
prunus_persica	Prupe.3G039500_v2.0.a1
pyrus_communis	pycom09g09900 pycom17g15930
rosa_chinensis	RchiOBHm_Chr2g0145801
rosa_laevigata	RLG00000020168
rosa_multiflora	Rmu_sc0000473.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434760 Rroxscaffold_2G00100440
rosa_rugosa	Rorug02G0393300
rosa_samantha	Rh2AG447600 Rh2CG434500
rosa_wichuraiana	Rw2G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	86, 299
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	7 cut(s)	97, 283, 313, 355, 527, 594, 613
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	5 cut(s)	196, 377, 418, 530, 597
AluI	AGCT	5 cut(s)	196, 377, 418, 530, 597
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	3 cut(s)	29, 46, 569
AlwI	GGATC	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	377
Asp700I	GAANNNNTTC	2 cut(s)	209, 451
Asp718I	GGTACC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	259, 526
BanI	GGYRCC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	382
BcoDI	GTCTC	3 cut(s)	29, 46, 569
BfaI	CTAG	4 cut(s)	62, 89, 509, 561
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	86, 454
BmrFI	CCNGG	1 cut(s)	382
BsaBI	GATNNNNATC	2 cut(s)	146, 263
BsaI	GGTCTC	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	136
Bse8I	GATNNNNATC	2 cut(s)	146, 263
BseBI	CCWGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	82, 334
BseJI	GATNNNNATC	2 cut(s)	146, 263
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	394
BsmAI	GTCTC	3 cut(s)	29, 46, 569
BsmBI	CGTCTC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	31, 106, 183, 249, 264
BspACI	CCGC	1 cut(s)	422
BspLI	GGNNCC	2 cut(s)	86, 454
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	393
BssMI	GATC	5 cut(s)	31, 106, 183, 249, 264
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	5 cut(s)	149, 308, 318, 350, 536
BstC8I	GCNNGC	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	82, 334
BstKTI	GATC	5 cut(s)	34, 109, 186, 252, 267
BstMAI	GTCTC	3 cut(s)	29, 46, 569
BstMBI	GATC	5 cut(s)	31, 106, 183, 249, 264
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	364
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	82, 334
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	121, 186
Cac8I	GCNNGC	1 cut(s)	395
Cfr10I	RCCGGY	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	85, 298
CviJI	RGCY	9 cut(s)	196, 236, 361, 377, 393, 418, 530, 577, 597
CviKI_1	RGCY	9 cut(s)	196, 236, 361, 377, 393, 418, 530, 577, 597
CviQI	GTAC	2 cut(s)	85, 298
DpnI	GATC	5 cut(s)	33, 108, 185, 251, 266
DpnII	GATC	5 cut(s)	31, 106, 183, 249, 264
Eam1104I	CTCTTC	5 cut(s)	149, 308, 318, 350, 536
EarI	CTCTTC	5 cut(s)	149, 308, 318, 350, 536
EciI	GGCGGA	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	380
Esp3I	CGTCTC	1 cut(s)	29
FaiI	YATR	2 cut(s)	533, 600
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	2 cut(s)	89, 341
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	4 cut(s)	62, 89, 509, 561
GluI	GCNGC	1 cut(s)	378
HapII	CCGG	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	65, 142, 178
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	259, 526
Hpy188I	TCNGA	3 cut(s)	183, 292, 369
Hpy188III	TCNNGA	9 cut(s)	26, 62, 104, 151, 199, 214, 253, 268, 509
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	2 cut(s)	22, 604
HpySE526I	ACGT	2 cut(s)	22, 604
KpnI	GGTACC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
Kzo9I	GATC	5 cut(s)	31, 106, 183, 249, 264
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	9 cut(s)	95, 149, 184, 188, 266, 314, 367, 394, 407
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	4 cut(s)	62, 89, 509, 561
MaeII	ACGT	2 cut(s)	22, 604
MalI	GATC	5 cut(s)	33, 108, 185, 251, 266
MboI	GATC	5 cut(s)	31, 106, 183, 249, 264
MhlI	GDGCHC	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	59, 172
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	238, 319, 351, 505
MroNI	GCCGGC	1 cut(s)	393
MroXI	GAANNNNTTC	2 cut(s)	209, 451
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
NaeI	GCCGGC	1 cut(s)	395
NdeII	GATC	5 cut(s)	31, 106, 183, 249, 264
NgoMIV	GCCGGC	1 cut(s)	393
NlaIV	GGNNCC	2 cut(s)	86, 454
PciSI	GCTCTTC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	209, 451
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	2 cut(s)	59, 172
PpsI	GAGTC	2 cut(s)	59, 172
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	86, 454
RsaI	GTAC	2 cut(s)	86, 299
RsaNI	GTAC	2 cut(s)	85, 298
SapI	GCTCTTC	1 cut(s)	149
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	5 cut(s)	31, 106, 183, 249, 264
SchI	GAGTC	2 cut(s)	59, 172
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	161
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	62, 89, 509, 561
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	2 cut(s)	25, 607
TaqI	TCGA	4 cut(s)	27, 105, 150, 213
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	2 cut(s)	128, 193
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	5 cut(s)	275, 491, 548, 554, 615
TspRI	CASTG	2 cut(s)	128, 193
XbaI	TCTAGA	2 cut(s)	61, 508
XmnI	GAANNNNTTC	2 cut(s)	209, 451
XspI	CTAG	4 cut(s)	62, 89, 509, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.