Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014934

Physical Location & Seq

Genomic Coordinates Reverse (-)

22298982 .. 22300890

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAGGTTCAAAAAACTAGCCACCAACTTCTTCACACCTACTTGTTTCAAGGCCAAAAGCCAGAGATCAGAACATAAATCCCAGTTATCATCCAAAGAGATCACTATTTCGCGTAGATTGTCACTTTCGGATGTGAGCAATTCATCAATCTGCACTGTCCTGAGTGACATATCAAATTCGCTTATCGGATCAAATCTTCATATCTTTGCCCACAATGAGCTCGAAAAGATCACTCAAAGCTTTTCTAAGAGCAATTATCTTGGAGAAGGCGGGTTCGGGAAAGTGTACAAAGGGTTTGTTGATGATAAGCTCAGGCCTGGCTTGGAAGCTCAACCTGTTGCTGTTAAGGTTTTGGATTTGGATGGCACGCAAGGTTATTCTGGAACCTTGCCTTGGTTGACAAGAGTCAAAATAGCAATTGGGGCTGCTAAAGGCCTCAGTTTCCTCCATGAGGAAGAAAAGCCAGTTATATATAGAGATTTCAAGGCTTCAAATATCTTACTAGACTGTGATTACACAGCTAAGCTCTCTGATTTCGGTCTAGCTATAGATGGCCCGGAAGGCGGTGAAACACATGTCACAACGCATGTCATGGGTACTCATGGCTATGCAGCTCCAGAATACATCACGACAGGTCATTTAACAACAATGAGCGACGTCTATAGCTTCGGTGTAGTTCTTTTGGAGCTTCTAACAGGTAGAAGATCCATGGATGAGAGCCGTACTTTTAGAGAACAGAACCTAGTGGAGTGGGCCAAGCCATTTTTGAAGGACTCGCACAAACTTGACCGTGTGATGGACCAAAGACTCGAGGGTCAGTATTCTACCGAAGGGGCTAAAAAGGCCGCTGCATTGGCTCATCAGTGCCTGAGTCATAACCCCAAGTCTAGACCAACAATGAGCACTGTGGTCAAGACCTTAGAGCCTCTAATGAACTTGAATGACATACCAATCGGACCCTTTGTGTATGTCGTTCCAACTGAATCAGGAAAACAAGGTCAAATTGGCTGTCATGATAAGGTAAAAAATGACAACAAAGGTGAAGTAAAAGAGGGAGGGTTGGAGAAAGTGAAGGGCAGCCACCGGAGGCGAAAAGGTCAGAGGCATAGGCATCGGATTAAGCCACTGAAGTCTAATACTGTCTTTTCGGATACTGCTCTATATAAGGTTCTCGGAACTGGTTTATACTCTCCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

399

Amino Acids

44.22

Weight (kDa)

9.29

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	132 - 307	1.1e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	138 - 305	3.2e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72540
fragaria_vesca	FvH4_6g34900
malus_domestica	MD09G1181400.v1.1 MD17G1167600.v1.1
prunus_persica	Prupe.3G039500_v2.0.a1
pyrus_communis	pycom09g09900 pycom17g15930
rosa_chinensis	RchiOBHm_Chr2g0145801
rosa_laevigata	RLG00000020168
rosa_multiflora	Rmu_sc0000473.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434760 Rroxscaffold_2G00100440
rosa_rugosa	Rorug02G0393300
rosa_samantha	Rh2AG447600 Rh2CG434500
rosa_wichuraiana	Rw2G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	813
AatII	GACGTC	1 cut(s)	660
AccII	CGCG	1 cut(s)	112
AciI	CCGC	3 cut(s)	270, 564, 846
AclWI	GGATC	2 cut(s)	196, 699
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	1148
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	3 cut(s)	287, 598, 724
AfiI	CCNNNNNNNGG	4 cut(s)	393, 451, 563, 796
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	6 cut(s)	10, 49, 484, 492, 769, 940
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
Alw21I	GWGCWC	2 cut(s)	222, 905
AlwI	GGATC	2 cut(s)	196, 699
AlwNI	CAGNNNCTG	1 cut(s)	868
Ama87I	CYCGRG	1 cut(s)	809
AoxI	GGCC	6 cut(s)	51, 314, 433, 553, 753, 843
ApeKI	GCWGC	4 cut(s)	425, 611, 848, 1077
ApoI	RAATTY	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	994, 1026
AspS9I	GGNCC	4 cut(s)	554, 753, 799, 956
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	578, 1052
AvaI	CYCGRG	1 cut(s)	809
AvaII	GGWCC	2 cut(s)	799, 956
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	222, 905
BbvI	GCAGC	4 cut(s)	412, 623, 835, 1089
BccI	CCATC	3 cut(s)	356, 545, 790
BceAI	ACGGC	1 cut(s)	705
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	1144
BcnI	CCSGG	1 cut(s)	557
BfaI	CTAG	5 cut(s)	17, 503, 542, 743, 888
BfmI	CTRYAG	2 cut(s)	546, 661
BfuI	GTATCC	1 cut(s)	1144
BglI	GCCNNNNNGGC	1 cut(s)	561
BisI	GCNGC	5 cut(s)	426, 612, 846, 849, 1078
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	5 cut(s)	427, 613, 847, 850, 1079
Bme1390I	CCNGG	2 cut(s)	318, 557
Bme18I	GGWCC	2 cut(s)	799, 956
BmeT110I	CYCGRG	1 cut(s)	809
BmgT120I	GGNCC	4 cut(s)	554, 753, 799, 956
BmiI	GGNNCC	2 cut(s)	385, 958
BmrFI	CCNGG	2 cut(s)	318, 557
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	1120
BmuI	ACTGGG	1 cut(s)	76
BoxI	GACNNNNGTC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuMI	CCSGG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	392, 708
BsaWI	WCCGGW	1 cut(s)	1083
Bsc4I	CCNNNNNNNGG	4 cut(s)	393, 451, 563, 796
Bse1I	ACTGG	3 cut(s)	82, 464, 1183
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	392, 708
BseGI	GGATG	4 cut(s)	89, 136, 367, 718
BseLI	CCNNNNNNNGG	4 cut(s)	393, 451, 563, 796
BseMII	CTCAG	4 cut(s)	152, 325, 451, 860
BseNI	ACTGG	3 cut(s)	82, 464, 1183
BseXI	GCAGC	4 cut(s)	412, 623, 835, 1089
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	6 cut(s)	53, 316, 435, 555, 755, 845
BsiHKAI	GWGCWC	2 cut(s)	222, 905
BsiHKCI	CYCGRG	1 cut(s)	809
BsiSI	CCGG	2 cut(s)	557, 1084
BslI	CCNNNNNNNGG	4 cut(s)	393, 451, 563, 796
BsnI	GGCC	6 cut(s)	53, 316, 435, 555, 755, 845
BsoBI	CYCGRG	1 cut(s)	809
Bsp1286I	GDGCHC	2 cut(s)	222, 905
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	65, 99, 188, 228, 704
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	3 cut(s)	270, 564, 846
BspANI	GGCC	6 cut(s)	53, 316, 435, 555, 755, 845
BspCNI	CTCAG	4 cut(s)	153, 324, 450, 861
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	2 cut(s)	385, 958
BspPI	GGATC	2 cut(s)	196, 699
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	82, 464, 1183
BssECI	CCNNGG	2 cut(s)	392, 708
BssMI	GATC	5 cut(s)	65, 99, 188, 228, 704
BssNI	GRCGYC	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	392, 708
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	5 cut(s)	157, 509, 791, 907, 1141
BstACI	GRCGYC	1 cut(s)	657
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	7 cut(s)	161, 246, 311, 437, 522, 869, 919
BstDSI	CCRYGG	1 cut(s)	708
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	4 cut(s)	89, 136, 367, 718
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	5 cut(s)	68, 102, 191, 231, 707
BstMBI	GATC	5 cut(s)	65, 99, 188, 228, 704
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 561, 842, 854
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	578, 590
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	316, 555
BstSFI	CTRYAG	2 cut(s)	546, 661
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	412, 623, 835, 1089
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	1144
BsuRI	GGCC	6 cut(s)	53, 316, 435, 555, 755, 845
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	89, 136, 367, 718
BtsIMutI	CAGTG	4 cut(s)	153, 869, 903, 1124
Cac8I	GCNNGC	1 cut(s)	368
CaiI	CAGNNNCTG	1 cut(s)	868
CciI	TCATGA	1 cut(s)	1012
Cfr13I	GGNCC	4 cut(s)	554, 753, 799, 956
Csp6I	GTAC	3 cut(s)	286, 597, 723
CviAII	CATG	8 cut(s)	449, 575, 587, 592, 602, 709, 1013, 1197
CviQI	GTAC	3 cut(s)	286, 597, 723
DdeI	CTNAG	7 cut(s)	161, 246, 311, 437, 522, 869, 919
DpnI	GATC	5 cut(s)	67, 101, 190, 230, 706
DpnII	GATC	5 cut(s)	65, 99, 188, 228, 704
DrdI	GACNNNNNNGTC	1 cut(s)	813
DseDI	GACNNNNNNGTC	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	392, 708
Eco147I	AGGCCT	2 cut(s)	316, 435
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	799, 956
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	1148
Eco88I	CYCGRG	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	392, 708
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	392, 708
FaeI	CATG	8 cut(s)	452, 578, 590, 595, 605, 712, 1016, 1200
FatI	CATG	8 cut(s)	448, 574, 586, 591, 601, 708, 1012, 1196
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	5 cut(s)	426, 612, 846, 849, 1078
FokI	GGATG	4 cut(s)	76, 143, 374, 725
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	5 cut(s)	426, 612, 846, 849, 1078
FspBI	CTAG	5 cut(s)	17, 503, 542, 743, 888
GluI	GCNGC	5 cut(s)	426, 612, 846, 849, 1078
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	6 cut(s)	53, 316, 435, 555, 755, 845
HapII	CCGG	2 cut(s)	557, 1084
Hin1I	GRCGYC	1 cut(s)	657
Hin1II	CATG	8 cut(s)	452, 578, 590, 595, 605, 712, 1016, 1200
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	5 cut(s)	405, 773, 807, 871, 983
HpaII	CCGG	2 cut(s)	557, 1084
HphI	GGTGA	2 cut(s)	578, 1052
Hpy166II	GTNNAC	2 cut(s)	286, 399
Hpy188I	TCNGA	9 cut(s)	70, 130, 188, 532, 956, 1101, 1116, 1150, 1175
Hpy188III	TCNNGA	9 cut(s)	160, 277, 381, 617, 628, 888, 913, 987, 1013
Hpy8I	GTNNAC	2 cut(s)	286, 399
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	5 cut(s)	260, 554, 763, 824, 1066
HpyCH4III	ACNGT	5 cut(s)	157, 509, 791, 907, 1141
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	3 cut(s)	153, 611, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 561, 842, 854
HpyF3I	CTNAG	7 cut(s)	161, 246, 311, 437, 522, 869, 919
HpySE526I	ACGT	1 cut(s)	657
Hsp92I	GRCGYC	1 cut(s)	657
Hsp92II	CATG	8 cut(s)	452, 578, 590, 595, 605, 712, 1016, 1200
Kzo9I	GATC	5 cut(s)	65, 99, 188, 228, 704
LmnI	GCTCC	2 cut(s)	619, 685
Lsp1109I	GCAGC	4 cut(s)	412, 623, 835, 1089
LweI	GCATC	1 cut(s)	1120
MaeI	CTAG	5 cut(s)	17, 503, 542, 743, 888
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	3 cut(s)	120, 164, 577
MalI	GATC	5 cut(s)	67, 101, 190, 230, 706
MboI	GATC	5 cut(s)	65, 99, 188, 228, 704
MboII	GAAGA	4 cut(s)	22, 188, 467, 714
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	2 cut(s)	222, 905
MluCI	AATT	5 cut(s)	139, 175, 253, 417, 1002
MlyI	GAGTC	4 cut(s)	414, 767, 801, 880
MmeI	TCCRAC	2 cut(s)	1001, 1041
MnlI	CCTC	9 cut(s)	445, 446, 455, 805, 936, 1045, 1049, 1080, 1095
MseI	TTAA	3 cut(s)	345, 641, 1119
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	2 cut(s)	557, 1084
MspR9I	CCNGG	2 cut(s)	318, 557
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	4 cut(s)	422, 561, 842, 854
NciI	CCSGG	1 cut(s)	557
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	5 cut(s)	65, 99, 188, 228, 704
NlaIII	CATG	8 cut(s)	452, 578, 590, 595, 605, 712, 1016, 1200
NlaIV	GGNNCC	2 cut(s)	385, 958
NmuCI	GTSAC	3 cut(s)	120, 164, 577
NspI	RCATGY	2 cut(s)	578, 590
PaeR7I	CTCGAG	1 cut(s)	809
PagI	TCATGA	1 cut(s)	1012
PceI	AGGCCT	2 cut(s)	316, 435
PciI	ACATGT	1 cut(s)	574
PfeI	GAWTC	1 cut(s)	983
PkrI	GCNGC	5 cut(s)	427, 613, 847, 850, 1079
PleI	GAGTC	4 cut(s)	413, 767, 801, 879
PpsI	GAGTC	4 cut(s)	413, 767, 801, 879
PscI	ACATGT	1 cut(s)	574
PshAI	GACNNNNGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	385, 958
PspPI	GGNCC	4 cut(s)	554, 753, 799, 956
PspXI	VCTCGAGB	1 cut(s)	809
PstNI	CAGNNNCTG	1 cut(s)	868
PsuI	RGATCY	1 cut(s)	704
RsaI	GTAC	3 cut(s)	287, 598, 724
RsaNI	GTAC	3 cut(s)	286, 597, 723
RseI	CAYNNNNRTG	1 cut(s)	606
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	345, 641, 1119
SatI	GCNGC	5 cut(s)	426, 612, 846, 849, 1078
Sau3AI	GATC	5 cut(s)	65, 99, 188, 228, 704
Sau96I	GGNCC	4 cut(s)	554, 753, 799, 956
SchI	GAGTC	4 cut(s)	414, 767, 801, 880
ScrFI	CCNGG	2 cut(s)	318, 557
SduI	GDGCHC	2 cut(s)	222, 905
SfaNI	GCATC	1 cut(s)	1120
SfcI	CTRYAG	2 cut(s)	546, 661
Sfr274I	CTCGAG	1 cut(s)	809
SinI	GGWCC	2 cut(s)	799, 956
SlaI	CTCGAG	1 cut(s)	809
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	5 cut(s)	139, 175, 253, 417, 1002
SseBI	AGGCCT	2 cut(s)	316, 435
SsiI	CCGC	3 cut(s)	270, 564, 846
SspMI	CTAG	5 cut(s)	17, 503, 542, 743, 888
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	2 cut(s)	316, 435
StyD4I	CCNGG	2 cut(s)	316, 555
StyI	CCWWGG	2 cut(s)	392, 708
TaaI	ACNGT	5 cut(s)	157, 509, 791, 907, 1141
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	2 cut(s)	222, 810
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	5 cut(s)	139, 175, 253, 417, 1002
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	1 cut(s)	983
Tru1I	TTAA	3 cut(s)	345, 641, 1119
Tru9I	TTAA	3 cut(s)	345, 641, 1119
TscAI	CASTG	4 cut(s)	160, 869, 910, 1131
TseFI	GTSAC	3 cut(s)	120, 164, 577
TseI	GCWGC	4 cut(s)	425, 611, 848, 1077
Tsp45I	GTSAC	3 cut(s)	120, 164, 577
TspDTI	ATGAA	3 cut(s)	132, 188, 947
TspRI	CASTG	4 cut(s)	160, 869, 910, 1131
VpaK11BI	GGWCC	2 cut(s)	799, 956
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	175
XbaI	TCTAGA	1 cut(s)	887
XceI	RCATGY	2 cut(s)	578, 590
XhoI	CTCGAG	1 cut(s)	809
XspI	CTAG	5 cut(s)	17, 503, 542, 743, 888
ZraI	GACGTC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.