pycom17g17010

phosphatase 2c

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
14910261 .. 14912677
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1635 bp
ATGTCAAATGTTACAAAGATAAGGAAATTGATGGAAGACATGTCTCCAGCAGTTGCAGTGACTCTTAGTTTAGGTAATTCGATATGTGATAGTTCTGGAATTGGAGCCAATGTGGAGTTCACATGGCTAAAGCTTGTAACAGACGCGGGAAATTTGTCTACGGATTCCTCTAAGGTGGTTTCTTTAGAGTCAGTCTCTTGCAGTAAAGGAAGTTCCGATGATATTGACAGCAAAGTTAGTGTGGTTCCCGTGCCATCACAAGACGATGATGGTGAAAACACTTCTGTTGCTAATGATATCATGGTTCAAGAAAGTGAGGAAGAGGAAATATTAGCCTTTAGATATGATACTAATGGAATTGTTAGTGAAGAATTGTTGACGTTAGAGATGGGGTCTGCGATAAGCTTGCCAGATGCTGTGGAGATGGGAAAAGTTGGTGAAGGGAATATTGTTGCAAAAGCTATCGTCTTGGTAGAATCGGCTGTTGGGAAAATGTCTTCTGGGGTTGTGGCAGCAGTAAGCTCTGCTTCTGAGTTATCAGATAAATCTGAATTAACAACCTCTACGGTACTTATCCAGTCAACTGGTGAGAAGGTTGTCAGTAAAGCAGGCATCCGGAGTGTTTTTGAGCTGAACTGTATTCCCCTCTGGGGTTCTGTATCAATTTGTGGAAGACGACCTGAAATGGAAGATGCATTTGCTGCTGTTCCTCGGTTTATCAACATTCCAATTAAAATGCTTGTCCGTAGTCAAGTGTATAATGGAATGAGCCAAAGTTTGACCCACCTAACCAGTCACTTTTTTGGCATTTATGATGGCCACGGTGGCCCTCAGGTTGCTAACTATTGTAGTGAGCGGCTCCATTTGGCTTTAGCTGAAGAGCTTGGAGGCATTAAGGATGACTCGGGTGATGGGATTATGGTAGAAACTCAGCAGGTGCAGTGGGAGAAAGCATTCACTAATTGTTTTCAGAGGGTTGATGATGAGATTGGAGGAAAAGTGAGCAGAGGCATCATTGAAAGCAACGCTGATGCTTCTGAAGCTAGTTTTGAGCCTGTTGCCCCAGAAACCGTTGGGTCTACAGCTGTCGTTGCGTTAGTTTCGTCATCCCATATTATAGTTGCAAACTGTGGTGATTCAAGAGCAGTTCTATGTCGTGGAAAACAAGCAATACCATTATCAGTCGACCATAAACCAAACAGAGAAGACGAATATGAAAGGATTGAGGCATCTGGTGGCAAGGTAATACAGTGGAATGGACACCGTGTTTTTGGAGTTCTTGCAATGTCAAGGTCCATTGGGGATAGATATTTGAAACCGTGGATAATTCCAGAACCAGAAGTCATGGTTGTCCCTCGAGCTAGAGACGATGAATGCCTTATTTTAGCTAGTGACGGTCTATGGGATGTTATGACGAATGAGGAAGCTTGTGAAGTGGCTCGAAGACGCATTCTGCTGTGGCACAAAAAGAACGGGGTTACACCTGTTGCAGAGAGGGGAAAAGGAGTTGATCCGGCAGCTGGGGAAGCTGCTGCCTACCTTTCAACCCTAGCCCTCCAGAAGGGAAGCAAGGACAATATCTCTGTGGTTGTGGTGGACTTGAAAGCTCAAAGGAAGTTCAAGAGCAAAACCTAA

Protein Analysis

545

Amino Acids

58.33

Weight (kDa)

4.89

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 244 - 527 1.6e-62 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 925
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 3 cut(s) 158, 1079, 1185
AccII CGCG 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 615
AciI CCGC 2 cut(s) 146, 856
AclWI GGATC 1 cut(s) 1505
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 2 cut(s) 897, 1059
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 7 cut(s) 308, 1019, 1140, 1315, 1545, 1603, 1621
AjuI GAANNNNNNNTTGG 4 cut(s) 101, 133, 468, 500
Alw26I GTCTC 3 cut(s) 48, 199, 1359
AlwI GGATC 1 cut(s) 1505
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 2 cut(s) 904, 1356
Aor13HI TCCGGA 1 cut(s) 615
AoxI GGCC 2 cut(s) 817, 826
ApeKI GCWGC 5 cut(s) 512, 701, 1517, 1529, 1532
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 953
AspS9I GGNCC 2 cut(s) 827, 1293
AsuHPI GGTGA 5 cut(s) 284, 449, 599, 920, 1145
AvaI CYCGRG 2 cut(s) 904, 1356
AvaII GGWCC 1 cut(s) 1293
AxyI CCTNAGG 1 cut(s) 831
BalI TGGCCA 1 cut(s) 819
BbsI GAAGAC 5 cut(s) 42, 489, 679, 1212, 1450
BbvI GCAGC 5 cut(s) 524, 688, 1516, 1519, 1529
BccI CCATC 7 cut(s) 25, 262, 263, 382, 418, 809, 905
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BcoDI GTCTC 3 cut(s) 48, 199, 1359
BfaI CTAG 4 cut(s) 1044, 1362, 1389, 1550
BfmI CTRYAG 1 cut(s) 1080
BfuAI ACCTGC 1 cut(s) 925
BglI GCCNNNNNGGC 1 cut(s) 825
BisI GCNGC 6 cut(s) 513, 702, 857, 1518, 1530, 1533
BlsI GCNGC 6 cut(s) 514, 703, 858, 1519, 1531, 1534
Bme18I GGWCC 1 cut(s) 1293
BmeT110I CYCGRG 2 cut(s) 904, 1356
BmgT120I GGNCC 2 cut(s) 827, 1293
BmiI GGNNCC 3 cut(s) 106, 246, 860
BmsI GCATC 6 cut(s) 403, 621, 682, 1020, 1021, 1238
BpiI GAAGAC 5 cut(s) 42, 489, 679, 1212, 1450
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpmI CTGGAG 2 cut(s) 30, 1541
BsaJI CCNNGG 3 cut(s) 710, 820, 1319
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 984, 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
Bse1I ACTGG 3 cut(s) 577, 589, 792
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 1290
BseAI TCCGGA 1 cut(s) 615
BseDI CCNNGG 3 cut(s) 710, 820, 1319
BseGI GGATG 4 cut(s) 612, 904, 1106, 1411
BseLI CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
BseMI GCAATG 1 cut(s) 1290
BseMII CTCAG 3 cut(s) 522, 845, 944
BseNI ACTGG 3 cut(s) 577, 589, 792
BseXI GCAGC 5 cut(s) 524, 688, 1516, 1519, 1529
BseYI CCCAGC 1 cut(s) 1520
BsgI GTGCAG 1 cut(s) 959
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 819, 828
BsiHKCI CYCGRG 2 cut(s) 904, 1356
BsiSI CCGG 2 cut(s) 616, 1514
BslFI GGGAC 1 cut(s) 1337
BslI CCNNNNNNNGG 3 cut(s) 650, 1520, 1561
BsmAI GTCTC 3 cut(s) 48, 199, 1359
BsmBI CGTCTC 1 cut(s) 1359
BsmFI GGGAC 1 cut(s) 1337
BsmI GAATGC 3 cut(s) 953, 1379, 1449
BsnI GGCC 2 cut(s) 819, 828
BsoBI CYCGRG 2 cut(s) 904, 1356
Bsp13I TCCGGA 1 cut(s) 615
Bsp143I GATC 1 cut(s) 1510
BspACI CCGC 2 cut(s) 146, 856
BspANI GGCC 2 cut(s) 819, 828
BspCNI CTCAG 3 cut(s) 523, 844, 943
BspEI TCCGGA 1 cut(s) 615
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 3 cut(s) 106, 246, 860
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 1 cut(s) 1505
BspQI GCTCTTC 1 cut(s) 873
BsrBI CCGCTC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 1290
BsrI ACTGG 3 cut(s) 577, 589, 792
BssECI CCNNGG 3 cut(s) 710, 820, 1319
BssMI GATC 1 cut(s) 1510
Bst4CI ACNGT 9 cut(s) 568, 638, 824, 1072, 1130, 1251, 1265, 1320, 1397
Bst6I CTCTTC 2 cut(s) 315, 873
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 407, 610
BstDEI CTNAG 5 cut(s) 65, 171, 531, 831, 930
BstDSI CCRYGG 2 cut(s) 820, 1319
BstENI CCTNNNNNAGG 1 cut(s) 1559
BstF5I GGATG 4 cut(s) 612, 904, 1106, 1411
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 1 cut(s) 1513
BstMAI GTCTC 3 cut(s) 48, 199, 1359
BstMBI GATC 1 cut(s) 1510
BstMWI GCNNNNNNNGC 5 cut(s) 701, 825, 1040, 1091, 1526
BstNSI RCATGY 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 1080
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 5 cut(s) 524, 688, 1516, 1519, 1529
BstV2I GAAGAC 5 cut(s) 42, 489, 679, 1212, 1450
BstXI CCANNNNNNTGG 1 cut(s) 584
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 2 cut(s) 819, 828
BtgI CCRYGG 2 cut(s) 820, 1319
BtsCI GGATG 4 cut(s) 612, 904, 1106, 1411
BtsI GCAGTG 2 cut(s) 63, 947
BtsIMutI CAGTG 3 cut(s) 63, 947, 1256
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 2 cut(s) 407, 610
CaiI CAGNNNCTG 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 827, 1293
CseI GACGC 2 cut(s) 152, 1455
Csp6I GTAC 1 cut(s) 569
CviAII CATG 4 cut(s) 40, 123, 301, 1345
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 5 cut(s) 65, 171, 531, 831, 930
DpnI GATC 1 cut(s) 1512
DpnII GATC 1 cut(s) 1510
EaeI YGGCCR 1 cut(s) 817
Eam1104I CTCTTC 2 cut(s) 315, 873
EarI CTCTTC 2 cut(s) 315, 873
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 1293
Eco57I CTGAAG 2 cut(s) 897, 1059
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 2 cut(s) 904, 1356
EcoNI CCTNNNNNAGG 1 cut(s) 1559
EcoRV GATATC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 697
Esp3I CGTCTC 1 cut(s) 1359
FaeI CATG 4 cut(s) 43, 126, 304, 1348
FalI AAGNNNNNCTT 2 cut(s) 511, 543
FaqI GGGAC 1 cut(s) 1337
FatI CATG 4 cut(s) 39, 122, 300, 1344
FauI CCCGC 1 cut(s) 139
FblI GTMKAC 3 cut(s) 158, 1079, 1185
Fnu4HI GCNGC 6 cut(s) 513, 702, 857, 1518, 1530, 1533
FokI GGATG 4 cut(s) 599, 911, 1093, 1418
Fsp4HI GCNGC 6 cut(s) 513, 702, 857, 1518, 1530, 1533
FspBI CTAG 4 cut(s) 1044, 1362, 1389, 1550
GluI GCNGC 6 cut(s) 513, 702, 857, 1518, 1530, 1533
GsaI CCCAGC 1 cut(s) 1524
GsuI CTGGAG 2 cut(s) 30, 1541
HaeIII GGCC 2 cut(s) 819, 828
HapII CCGG 2 cut(s) 616, 1514
HgaI GACGC 2 cut(s) 152, 1455
Hin1II CATG 4 cut(s) 43, 126, 304, 1348
HincII GTYRAC 3 cut(s) 378, 582, 1186
HindII GTYRAC 3 cut(s) 378, 582, 1186
HindIII AAGCTT 3 cut(s) 131, 403, 1425
HinfI GANTC 6 cut(s) 61, 164, 188, 476, 902, 1136
HpaII CCGG 2 cut(s) 616, 1514
HphI GGTGA 5 cut(s) 284, 449, 599, 920, 1145
Hpy166II GTNNAC 7 cut(s) 120, 159, 378, 582, 1080, 1186, 1597
Hpy188I TCNGA 6 cut(s) 217, 532, 541, 550, 972, 1039
Hpy188III TCNNGA 7 cut(s) 96, 308, 616, 1140, 1331, 1558, 1621
Hpy8I GTNNAC 7 cut(s) 120, 159, 378, 582, 1080, 1186, 1597
HpyAV CCTTC 3 cut(s) 434, 586, 1555
HpyCH4III ACNGT 9 cut(s) 568, 638, 824, 1072, 1130, 1251, 1265, 1320, 1397
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 8 cut(s) 56, 201, 455, 695, 940, 1124, 1283, 1490
HpyF10VI GCNNNNNNNGC 5 cut(s) 701, 825, 1040, 1091, 1526
HpyF3I CTNAG 5 cut(s) 65, 171, 531, 831, 930
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 4 cut(s) 43, 126, 304, 1348
Kpn2I TCCGGA 1 cut(s) 615
Kzo9I GATC 1 cut(s) 1510
LguI GCTCTTC 1 cut(s) 873
LmnI GCTCC 2 cut(s) 104, 864
Lsp1109I GCAGC 5 cut(s) 524, 688, 1516, 1519, 1529
LweI GCATC 6 cut(s) 403, 621, 682, 1020, 1021, 1238
MaeI CTAG 4 cut(s) 1044, 1362, 1389, 1550
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 6 cut(s) 10, 58, 136, 794, 1391, 1477
MalI GATC 1 cut(s) 1512
MbiI CCGCTC 1 cut(s) 856
MboI GATC 1 cut(s) 1510
MboII GAAGA 9 cut(s) 47, 332, 380, 489, 684, 701, 890, 1217, 1455
MlsI TGGCCA 1 cut(s) 819
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 3 cut(s) 55, 197, 896
Mox20I TGGCCA 1 cut(s) 819
Mph1103I ATGCAT 1 cut(s) 697
MroI TCCGGA 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 953
MscI TGGCCA 1 cut(s) 819
MseI TTAA 3 cut(s) 554, 732, 894
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 1085, 1520
MspI CCGG 2 cut(s) 616, 1514
Mva1269I GAATGC 3 cut(s) 953, 1379, 1449
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 701, 825, 1040, 1091, 1526
NdeII GATC 1 cut(s) 1510
NlaIII CATG 4 cut(s) 43, 126, 304, 1348
NlaIV GGNNCC 3 cut(s) 106, 246, 860
NmuCI GTSAC 3 cut(s) 58, 794, 1391
NsiI ATGCAT 1 cut(s) 697
NspI RCATGY 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 1356
PaqCI CACCTGC 1 cut(s) 925
PciI ACATGT 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 873
PctI GAATGC 3 cut(s) 953, 1379, 1449
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 3 cut(s) 164, 476, 1136
PkrI GCNGC 6 cut(s) 514, 703, 858, 1519, 1531, 1534
PleI GAGTC 3 cut(s) 55, 196, 896
PpsI GAGTC 3 cut(s) 55, 196, 896
PscI ACATGT 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 1520
PspN4I GGNNCC 3 cut(s) 106, 246, 860
PspPI GGNCC 2 cut(s) 827, 1293
PspXI VCTCGAGB 1 cut(s) 1356
PsrI GAACNNNNNNTAC 2 cut(s) 196, 228
PstNI CAGNNNCTG 1 cut(s) 416
PvuII CAGCTG 2 cut(s) 1085, 1520
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
SalI GTCGAC 1 cut(s) 1184
SapI GCTCTTC 1 cut(s) 873
SaqAI TTAA 3 cut(s) 554, 732, 894
SatI GCNGC 6 cut(s) 513, 702, 857, 1518, 1530, 1533
Sau3AI GATC 1 cut(s) 1510
Sau96I GGNCC 2 cut(s) 827, 1293
SchI GAGTC 3 cut(s) 55, 197, 896
SfaNI GCATC 6 cut(s) 403, 621, 682, 1020, 1021, 1238
SfcI CTRYAG 1 cut(s) 1080
SfiI GGCCNNNNNGGCC 1 cut(s) 825
Sfr274I CTCGAG 1 cut(s) 1356
SinI GGWCC 1 cut(s) 1293
SlaI CTCGAG 1 cut(s) 1356
SmlI CTYRAG 1 cut(s) 1356
SmoI CTYRAG 1 cut(s) 1356
SsiI CCGC 2 cut(s) 146, 856
SspI AATATT 2 cut(s) 330, 448
SspMI CTAG 4 cut(s) 1044, 1362, 1389, 1550
TaaI ACNGT 9 cut(s) 568, 638, 824, 1072, 1130, 1251, 1265, 1320, 1397
TaiI ACGT 1 cut(s) 383
TaqI TCGA 4 cut(s) 80, 1185, 1357, 1441
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 3 cut(s) 164, 476, 1136
Tru1I TTAA 3 cut(s) 554, 732, 894
Tru9I TTAA 3 cut(s) 554, 732, 894
TscAI CASTG 3 cut(s) 63, 947, 1256
TseFI GTSAC 3 cut(s) 58, 794, 1391
TseI GCWGC 5 cut(s) 512, 701, 1517, 1529, 1532
Tsp45I GTSAC 3 cut(s) 58, 794, 1391
TspDTI ATGAA 2 cut(s) 1230, 1386
TspGWI ACGGA 2 cut(s) 176, 734
TspRI CASTG 3 cut(s) 63, 947, 1256
VpaK11BI GGWCC 1 cut(s) 1293
XagI CCTNNNNNAGG 1 cut(s) 1559
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 43
XhoI CTCGAG 1 cut(s) 1356
XmiI GTMKAC 3 cut(s) 158, 1079, 1185
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 4 cut(s) 1044, 1362, 1389, 1550
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.