pycom17g19670

VHS domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
17615134 .. 17617866
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
ATGGATTCGAGTCGAAGAGCTGTGGAGTCGTACTGGAGGTCCCGGATGATCGATGCGGTGACTTCCGACGAAGACAAGGTTGCACCCGTTTACAAATTGGAAGAGATTTGCCAGCTTCTGCGATCCTCGCATGTCAGTATTGTCAAGGAGATGTCTGAGTTTGTATTTAAGCGTTTGGACCATAAAAGTCCAATTGTTAAGCAGAAGGCTCTTAGATTAATAAAGTATGCAGTGGGAAAGTCTGGTGTGGAGTTCAGGAGGGAAATGCAAAGAAATTCAGTGGCAGTGCGCCAACTATTTCACTATAAGGGACACCCAGATCCTTTGAAAGGAGATGCACTTAATAAGGCTGTGCGGGATACTGCTCATGAGGCTATTTCTGCTATCTTTCAAGAGGAAAGTAATGCAGCACCTGCAGATGATCTTAACAGAAGAATACAAGGTTTTGGGAATACGAACATCGAGATGTCATCAGATGAAAAAAAGTCTTTCATTAGTGAGGTTGTTGGTCTTGGAAGTGCATCTATCAAACAGGGACTTACTAATTTTACCCATAGTCCCTCTTTTAAAAAGAAAGACGATGGAAATTACAAAAGTCCAAATCTTCATAGATCGTTGACCATAGAAAGCGAGCAGGCTGATAGATATGAACCTGCTCAATATCGCAATGAGGCTCAAAGTAGTTTTGGGTCATCAAAAAATGTGGCTAGTGGACCATGGAATGAGGATTCTAGGGTAACCAAAACTGAAATAACCAATGGAGATTCCAGTTCAAATTACAGAGAGAGTAAAACCCGTGAGGAGAGGTTGTTGGAGACCATTGTGACGTCGGGTGGTGTACGTTTACAACCCACTCGAGATGCCATTCTGATTTTCCTTACTGAGGCGAAGAAGTTGGATGCTGTAGCTTTGAGTCATGCCCTGGATTTAAAACTACAATCTCCATTGTGGCAGGTACGCATGAAAACTATTTGTGTTCTTGAATCAATTTTGAGGAGAAAGGATGATGAGCATTTTGCAATCATAGAATCATATTTTATTGACAACAAAGATCTTGTAGTGAGATGCTCCGACTCTCCCCAGTCTTCTTTGAGGGAAAAGGCTAACAAGGTTTTGAGCCTCTTGGGTGGAGAACAGACAGACAATGTGGCAAGTAATTCAGAACAGCCTATGAAGGCTCAGACTGCTACTTTTGTTCAGATGCCTGACCTTATAGACACCGGTGATCTAGATGATTACCACGTGACCAATGCTGCAATTGAGAACCCAAGTTCGATCAAGTCATCACAAACTTAA

Protein Analysis

432

Amino Acids

48.36

Weight (kDa)

6.59

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 17 - 130 7.8e-06 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
AatII GACGTC 1 cut(s) 830
Acc36I ACCTGC 3 cut(s) 421, 661, 943
AciI CCGC 2 cut(s) 56, 355
AclWI GGATC 2 cut(s) 117, 314
AcsI RAATTY 1 cut(s) 274
AcvI CACGTG 1 cut(s) 1243
AcyI GRCGYC 1 cut(s) 827
AfaI GTAC 3 cut(s) 32, 840, 957
AfiI CCNNNNNNNGG 2 cut(s) 329, 883
AgeI ACCGGT 1 cut(s) 1220
AgsI TTSAA 4 cut(s) 328, 392, 774, 983
AjnI CCWGG 1 cut(s) 921
AluBI AGCT 3 cut(s) 20, 115, 908
AluI AGCT 3 cut(s) 20, 115, 908
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 2 cut(s) 117, 314
AlwNI CAGNNNCTG 2 cut(s) 118, 413
Ama87I CYCGRG 1 cut(s) 855
ApeKI GCWGC 2 cut(s) 407, 1253
ApoI RAATTY 1 cut(s) 274
AseI ATTAAT 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 1220
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 3 cut(s) 39, 178, 713
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 70, 1235
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 3 cut(s) 39, 178, 713
BbrPI CACGTG 1 cut(s) 1243
BbsI GAAGAC 2 cut(s) 78, 1077
BbvI GCAGC 2 cut(s) 419, 1240
BccI CCATC 1 cut(s) 575
BciT130I CCWGG 1 cut(s) 923
BciVI GTATCC 1 cut(s) 352
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 3 cut(s) 708, 732, 1229
BfmI CTRYAG 2 cut(s) 414, 903
BfuAI ACCTGC 3 cut(s) 421, 661, 943
BfuI GTATCC 1 cut(s) 352
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 2 cut(s) 408, 1254
BlsI GCNGC 2 cut(s) 409, 1255
Bme1390I CCNGG 2 cut(s) 43, 923
Bme18I GGWCC 3 cut(s) 39, 178, 713
BmeT110I CYCGRG 1 cut(s) 855
BmgT120I GGNCC 3 cut(s) 39, 178, 713
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 43, 923
BmrI ACTGGG 1 cut(s) 1075
BmsI GCATC 7 cut(s) 43, 325, 530, 850, 889, 1055, 1191
BmuI ACTGGG 1 cut(s) 1075
BpiI GAAGAC 2 cut(s) 78, 1077
BpmI CTGGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 1243
BsaHI GRCGYC 1 cut(s) 827
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 2 cut(s) 716, 921
BsaWI WCCGGW 1 cut(s) 1220
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 883
Bse118I RCCGGY 1 cut(s) 1220
Bse1I ACTGG 3 cut(s) 38, 768, 1081
Bse3DI GCAATG 1 cut(s) 673
BseBI CCWGG 1 cut(s) 923
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 716, 921
BseGI GGATG 3 cut(s) 51, 904, 1009
BseLI CCNNNNNNNGG 2 cut(s) 329, 883
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 3 cut(s) 147, 873, 1193
BseNI ACTGG 3 cut(s) 38, 768, 1081
BseRI GAGGAG 2 cut(s) 815, 1009
BseXI GCAGC 2 cut(s) 419, 1240
BshTI ACCGGT 1 cut(s) 1220
BshVI ATCGAT 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 2 cut(s) 43, 1221
BslFI GGGAC 4 cut(s) 25, 324, 543, 549
BslI CCNNNNNNNGG 2 cut(s) 329, 883
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 4 cut(s) 25, 324, 543, 549
Bso31I GGTCTC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 855
Bsp143I GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 2 cut(s) 56, 355
BspCNI CTCAG 3 cut(s) 148, 874, 1192
BspDI ATCGAT 1 cut(s) 51
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 3 cut(s) 421, 661, 943
BspPI GGATC 2 cut(s) 117, 314
BspQI GCTCTTC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 1220
BsrI ACTGG 3 cut(s) 38, 768, 1081
BssAI RCCGGY 1 cut(s) 1220
BssECI CCNNGG 2 cut(s) 716, 921
BssMI GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
BssNI GRCGYC 1 cut(s) 827
BssT1I CCWWGG 1 cut(s) 716
Bst2UI CCWGG 1 cut(s) 923
Bst6I CTCTTC 2 cut(s) 10, 96
BstACI GRCGYC 1 cut(s) 827
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 1243
BstC8I GCNNGC 3 cut(s) 113, 632, 636
BstDEI CTNAG 4 cut(s) 156, 212, 882, 1179
BstDSI CCRYGG 1 cut(s) 716
BstEII GGTNACC 1 cut(s) 736
BstENI CCTNNNNNAGG 2 cut(s) 327, 881
BstF5I GGATG 3 cut(s) 51, 904, 1009
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 8 cut(s) 51, 125, 322, 424, 614, 1054, 1228, 1278
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
BstMWI GCNNNNNNNGC 5 cut(s) 127, 371, 380, 413, 1184
BstNI CCWGG 1 cut(s) 923
BstNSI RCATGY 1 cut(s) 134
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 2 cut(s) 41, 921
BstSFI CTRYAG 2 cut(s) 414, 903
BstV1I GCAGC 2 cut(s) 419, 1240
BstV2I GAAGAC 2 cut(s) 78, 1077
BstX2I RGATCY 2 cut(s) 319, 1051
BstYI RGATCY 2 cut(s) 319, 1051
Bsu15I ATCGAT 1 cut(s) 51
BsuI GTATCC 1 cut(s) 352
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 3 cut(s) 51, 904, 1009
BtsI GCAGTG 2 cut(s) 237, 291
BtsIMutI CAGTG 3 cut(s) 237, 285, 291
BveI ACCTGC 3 cut(s) 421, 661, 943
Cac8I GCNNGC 3 cut(s) 113, 632, 636
CaiI CAGNNNCTG 2 cut(s) 118, 413
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 1220
Cfr13I GGNCC 3 cut(s) 39, 178, 713
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 3 cut(s) 31, 839, 956
CspAI ACCGGT 1 cut(s) 1220
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 5 cut(s) 131, 368, 717, 917, 961
CviQI GTAC 3 cut(s) 31, 839, 956
DdeI CTNAG 4 cut(s) 156, 212, 882, 1179
DpnI GATC 8 cut(s) 50, 124, 321, 423, 613, 1053, 1227, 1277
DpnII GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
DraI TTTAAA 2 cut(s) 568, 930
Eam1104I CTCTTC 2 cut(s) 10, 96
EarI CTCTTC 2 cut(s) 10, 96
Eco130I CCWWGG 1 cut(s) 716
Eco31I GGTCTC 1 cut(s) 809
Eco47I GGWCC 3 cut(s) 39, 178, 713
Eco72I CACGTG 1 cut(s) 1243
Eco88I CYCGRG 1 cut(s) 855
Eco91I GGTNACC 1 cut(s) 736
EcoNI CCTNNNNNAGG 2 cut(s) 327, 881
EcoO109I RGGNCCY 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 921
EcoT14I CCWWGG 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 716
FaeI CATG 5 cut(s) 134, 371, 720, 920, 964
FaqI GGGAC 4 cut(s) 25, 324, 543, 549
FatI CATG 5 cut(s) 130, 367, 716, 916, 960
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 408, 1254
FokI GGATG 3 cut(s) 58, 911, 1016
Fsp4HI GCNGC 2 cut(s) 408, 1254
FspBI CTAG 3 cut(s) 708, 732, 1229
GlaI GCGC 1 cut(s) 290
GluI GCNGC 2 cut(s) 408, 1254
GsuI CTGGAG 1 cut(s) 55
HapII CCGG 2 cut(s) 43, 1221
HhaI GCGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 827
Hin1II CATG 5 cut(s) 134, 371, 720, 920, 964
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 9 cut(s) 5, 10, 26, 728, 764, 913, 983, 1028, 1073
HpaII CCGG 2 cut(s) 43, 1221
HphI GGTGA 2 cut(s) 70, 1235
Hpy166II GTNNAC 5 cut(s) 91, 618, 713, 839, 845
Hpy188I TCNGA 8 cut(s) 67, 157, 475, 870, 1072, 1162, 1182, 1200
Hpy188III TCNNGA 7 cut(s) 256, 368, 392, 463, 857, 980, 1229
Hpy8I GTNNAC 5 cut(s) 91, 618, 713, 839, 845
Hpy99I CGWCG 2 cut(s) 71, 832
HpyAV CCTTC 2 cut(s) 199, 1168
HpyCH4IV ACGT 3 cut(s) 827, 841, 1242
HpyCH4V TGCA 9 cut(s) 83, 230, 268, 338, 407, 416, 521, 1019, 1256
HpyF10VI GCNNNNNNNGC 5 cut(s) 127, 371, 380, 413, 1184
HpyF3I CTNAG 4 cut(s) 156, 212, 882, 1179
HpySE526I ACGT 3 cut(s) 827, 841, 1242
Hsp92I GRCGYC 1 cut(s) 827
Hsp92II CATG 5 cut(s) 134, 371, 720, 920, 964
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 1073
Lsp1109I GCAGC 2 cut(s) 419, 1240
LweI GCATC 7 cut(s) 43, 325, 530, 850, 889, 1055, 1191
MaeI CTAG 3 cut(s) 708, 732, 1229
MaeII ACGT 3 cut(s) 827, 841, 1242
MaeIII GTNAC 4 cut(s) 58, 736, 823, 1243
MalI GATC 8 cut(s) 50, 124, 321, 423, 613, 1053, 1227, 1277
MboI GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
MboII GAAGA 7 cut(s) 27, 83, 113, 444, 596, 901, 1077
MfeI CAATTG 2 cut(s) 192, 1257
MflI RGATCY 2 cut(s) 319, 1051
MluCI AATT 9 cut(s) 95, 192, 274, 544, 586, 775, 987, 1156, 1257
MlyI GAGTC 4 cut(s) 19, 35, 922, 1067
MmeI TCCRAC 4 cut(s) 90, 792, 876, 1095
MseI TTAA 8 cut(s) 168, 198, 218, 342, 426, 567, 929, 1294
MslI CAYNNNNRTG 1 cut(s) 464
MspI CCGG 2 cut(s) 43, 1221
MspR9I CCNGG 2 cut(s) 43, 923
MunI CAATTG 2 cut(s) 192, 1257
MvaI CCWGG 1 cut(s) 923
MwoI GCNNNNNNNGC 5 cut(s) 127, 371, 380, 413, 1184
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 716
NdeII GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
NlaIII CATG 5 cut(s) 134, 371, 720, 920, 964
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 3 cut(s) 58, 823, 1243
NspI RCATGY 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 855
PagI TCATGA 1 cut(s) 367
PaqCI CACCTGC 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 10
PfeI GAWTC 5 cut(s) 5, 728, 764, 983, 1028
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 1220
PkrI GCNGC 2 cut(s) 409, 1255
PleI GAGTC 4 cut(s) 18, 34, 921, 1067
PmaCI CACGTG 1 cut(s) 1243
PmlI CACGTG 1 cut(s) 1243
PpsI GAGTC 4 cut(s) 18, 34, 921, 1067
Ppu21I YACGTR 1 cut(s) 1243
PpuMI RGGWCCY 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 921
PspCI CACGTG 1 cut(s) 1243
PspEI GGTNACC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 921
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 3 cut(s) 39, 178, 713
PspPPI RGGWCCY 1 cut(s) 39
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 2 cut(s) 118, 413
PsuI RGATCY 2 cut(s) 319, 1051
RsaI GTAC 3 cut(s) 32, 840, 957
RsaNI GTAC 3 cut(s) 31, 839, 956
RseI CAYNNNNRTG 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 8 cut(s) 168, 198, 218, 342, 426, 567, 929, 1294
SatI GCNGC 2 cut(s) 408, 1254
Sau3AI GATC 8 cut(s) 48, 122, 319, 421, 611, 1051, 1225, 1275
Sau96I GGNCC 3 cut(s) 39, 178, 713
SchI GAGTC 4 cut(s) 19, 35, 922, 1067
ScrFI CCNGG 2 cut(s) 43, 923
SfaNI GCATC 7 cut(s) 43, 325, 530, 850, 889, 1055, 1191
SfcI CTRYAG 2 cut(s) 414, 903
Sfr274I CTCGAG 1 cut(s) 855
SgrAI CRCCGGYG 1 cut(s) 1220
SinI GGWCC 3 cut(s) 39, 178, 713
SlaI CTCGAG 1 cut(s) 855
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 855
SmoI CTYRAG 1 cut(s) 855
Sse9I AATT 9 cut(s) 95, 192, 274, 544, 586, 775, 987, 1156, 1257
SsiI CCGC 2 cut(s) 56, 355
SspMI CTAG 3 cut(s) 708, 732, 1229
StyD4I CCNGG 2 cut(s) 41, 921
StyI CCWWGG 1 cut(s) 716
TaiI ACGT 3 cut(s) 830, 844, 1245
TaqI TCGA 6 cut(s) 8, 13, 51, 462, 856, 1274
TasI AATT 9 cut(s) 95, 192, 274, 544, 586, 775, 987, 1156, 1257
TfiI GAWTC 5 cut(s) 5, 728, 764, 983, 1028
Tru1I TTAA 8 cut(s) 168, 198, 218, 342, 426, 567, 929, 1294
Tru9I TTAA 8 cut(s) 168, 198, 218, 342, 426, 567, 929, 1294
TscAI CASTG 3 cut(s) 237, 285, 291
TseFI GTSAC 3 cut(s) 58, 823, 1243
TseI GCWGC 2 cut(s) 407, 1253
Tsp45I GTSAC 3 cut(s) 58, 823, 1243
TspDTI ATGAA 6 cut(s) 481, 492, 596, 663, 977, 1187
TspRI CASTG 3 cut(s) 237, 285, 291
VpaK11BI GGWCC 3 cut(s) 39, 178, 713
VspI ATTAAT 1 cut(s) 218
XagI CCTNNNNNAGG 2 cut(s) 327, 881
XapI RAATTY 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 1228
XceI RCATGY 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 855
XspI CTAG 3 cut(s) 708, 732, 1229
ZraI GACGTC 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.