Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Reverse (-)

18727243 .. 18728641

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGTTCTGAAGTTGAGCAAAAGCTTCCTGTCCTAGATTTCTCCAAGGAAGCTCTGAAGCCAGGGACCAACTCATGGCTCTTGGCATGCAATGATGTTCAACAAGCACTTGAAGAGTTCGGATGTTTTGTAGTGTTGTATGACAAAATCTCCAATGAATTTCGCAATGCTTTACTGCGTTCCCTTGAAGAACTATTTGATCTCCCTACCGAGACCAAAATGACAAACAAATATGAAAAACCATTAAATGGCTATGTGGGACAAATTCCCAAACTTCCTCTCCATGAAAGCTTGGGCATCGACAATGCAACCAATTTTGAGGAGACTCAAAAATTCACAAAGCTCATGTGGCCTGCTGGAAATGATAAATTCTGTGAAGCAGCATATGCGTTTGCAAAAGTGGCGGAGGAGTTGGATCAAATGGTTGCTAGAATGATATTTGAGAGCTATGGTGTGGAGAAGTATTATGACTCATATGTTGGATCGATCTCTTACCTTCTTCGAATCTTGCAAAATAGATCACCCAAAGAAAATGAGCACAATCTTGGCTTCATCGCTCATACTGACAAGAGCTTCACAACCGTACTTTATCAGAATAATCAAGTCCATGCTCTGGAGGTTGAAACAAGGAACCACGAATGGATTAAAGTTGAGTTTCCACCTTCATCCTTCATAGTCATGGCGGGTGATGCCCTAATGGCATGGAGCAATGACAGGATATTATCTCCTAATCATCGAGTTATTATGAGTGGGAATGAAACAAGGTACTCATTGGCACAATTTGCATTTAGCGATGGCGAGATACATGTACCTGAAGAGCTTGGTAATGAAGAACGCCCATTACGCTACAAGTCATTTGATCATCCTGGACTACTACGTTTCTTTCGCTCTCAAGATGGTTATATTTCAAACAGTGCTATAAAAGCCTACTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.83

Weight (kDa)

5.15

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	2.8e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	176 - 262	3.8e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	75, 248, 613
AciI	CCGC	2 cut(s)	404, 683
AclWI	GGATC	2 cut(s)	423, 490
AcsI	RAATTY	4 cut(s)	158, 264, 332, 368
AcuI	CTGAAG	3 cut(s)	30, 77, 834
AfaI	GTAC	3 cut(s)	585, 767, 810
AfiI	CCNNNNNNNGG	3 cut(s)	75, 248, 613
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	5 cut(s)	101, 113, 188, 623, 909
AjnI	CCWGG	2 cut(s)	61, 865
AluBI	AGCT	7 cut(s)	25, 53, 291, 343, 447, 573, 820
AluI	AGCT	7 cut(s)	25, 53, 291, 343, 447, 573, 820
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	2 cut(s)	206, 317
AlwI	GGATC	2 cut(s)	423, 490
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	4 cut(s)	158, 264, 332, 368
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	513, 698
AsuII	TTCGAA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	788, 890
BciT130I	CCWGG	2 cut(s)	63, 867
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	206, 317
BfaI	CTAG	2 cut(s)	35, 429
BglI	GCCNNNNNGGC	1 cut(s)	698
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	2 cut(s)	63, 867
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	67, 632
BmrFI	CCNGG	2 cut(s)	63, 867
BmsI	GCATC	2 cut(s)	306, 679
BpmI	CTGGAG	1 cut(s)	635
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	876
Bsa29I	ATCGAT	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	45, 62
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 264, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 248, 613
Bse3DI	GCAATG	3 cut(s)	97, 172, 715
BseBI	CCWGG	2 cut(s)	63, 867
BseCI	ATCGAT	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	45, 62
BseGI	GGATG	3 cut(s)	128, 665, 862
BseLI	CCNNNNNNNGG	3 cut(s)	75, 248, 613
BseMI	GCAATG	3 cut(s)	97, 172, 715
BseRI	GAGGAG	2 cut(s)	335, 422
BseXI	GCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	79, 273
BslI	CCNNNNNNNGG	3 cut(s)	75, 248, 613
BsmAI	GTCTC	2 cut(s)	206, 317
BsmFI	GGGAC	2 cut(s)	79, 273
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
BspACI	CCGC	2 cut(s)	404, 683
BspANI	GGCC	1 cut(s)	352
BspDI	ATCGAT	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	67, 632
BspPI	GGATC	2 cut(s)	423, 490
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	3 cut(s)	97, 172, 715
BssECI	CCNNGG	2 cut(s)	45, 62
BssMI	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	63, 867
Bst4CI	ACNGT	3 cut(s)	583, 914, 932
Bst6I	CTCTTC	2 cut(s)	108, 810
BstAPI	GCANNNNNTGC	2 cut(s)	386, 782
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	88, 354
BstF5I	GGATG	3 cut(s)	128, 665, 862
BstKTI	GATC	6 cut(s)	202, 418, 485, 489, 521, 862
BstMAI	GTCTC	2 cut(s)	206, 317
BstMBI	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
BstMWI	GCNNNNNNNGC	8 cut(s)	349, 386, 401, 689, 698, 782, 843, 923
BstNI	CCWGG	2 cut(s)	63, 867
BstNSI	RCATGY	2 cut(s)	90, 809
BstSCI	CCNGG	2 cut(s)	61, 865
BstV1I	GCAGC	1 cut(s)	392
Bsu15I	ATCGAT	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	352
BsuTUI	ATCGAT	1 cut(s)	485
BtgZI	GCGATG	2 cut(s)	538, 807
BtsCI	GGATG	3 cut(s)	128, 665, 862
BtsIMutI	CAGTG	1 cut(s)	919
Cac8I	GCNNGC	2 cut(s)	88, 354
Cfr13I	GGNCC	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	584, 766, 809
CviAII	CATG	8 cut(s)	75, 87, 284, 346, 608, 679, 702, 806
CviQI	GTAC	3 cut(s)	584, 766, 809
DpnI	GATC	6 cut(s)	201, 417, 484, 488, 520, 861
DpnII	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
Eam1104I	CTCTTC	2 cut(s)	108, 810
EarI	CTCTTC	2 cut(s)	108, 810
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	3 cut(s)	30, 77, 834
EcoRII	CCWGG	2 cut(s)	61, 865
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	8 cut(s)	78, 90, 287, 349, 611, 682, 705, 809
FaqI	GGGAC	2 cut(s)	79, 273
FatI	CATG	8 cut(s)	74, 86, 283, 345, 607, 678, 701, 805
FauI	CCCGC	1 cut(s)	676
FauNDI	CATATG	2 cut(s)	385, 475
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	135, 652, 849
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	35, 429
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	1 cut(s)	352
Hin1II	CATG	8 cut(s)	78, 90, 287, 349, 611, 682, 705, 809
HindIII	AAGCTT	2 cut(s)	23, 289
HinfI	GANTC	3 cut(s)	325, 470, 504
HphI	GGTGA	2 cut(s)	513, 698
Hpy188I	TCNGA	4 cut(s)	10, 57, 122, 594
Hpy188III	TCNNGA	2 cut(s)	614, 893
HpyAV	CCTTC	3 cut(s)	506, 672, 679
HpyCH4III	ACNGT	3 cut(s)	583, 914, 932
HpyCH4IV	ACGT	1 cut(s)	877
HpyCH4V	TGCA	5 cut(s)	90, 308, 395, 511, 785
HpyF10VI	GCNNNNNNNGC	8 cut(s)	349, 386, 401, 689, 698, 782, 843, 923
HpySE526I	ACGT	1 cut(s)	877
Hsp92II	CATG	8 cut(s)	78, 90, 287, 349, 611, 682, 705, 809
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	1 cut(s)	705
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	2 cut(s)	306, 679
MaeI	CTAG	2 cut(s)	35, 429
MaeII	ACGT	1 cut(s)	877
MalI	GATC	6 cut(s)	201, 417, 484, 488, 520, 861
MboI	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
MboII	GAAGA	5 cut(s)	125, 200, 491, 827, 842
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	6 cut(s)	158, 264, 313, 332, 368, 779
MlyI	GAGTC	2 cut(s)	319, 464
MmeI	TCCRAC	2 cut(s)	393, 460
MnlI	CCTC	4 cut(s)	288, 313, 400, 610
MseI	TTAA	2 cut(s)	245, 645
MslI	CAYNNNNRTG	1 cut(s)	677
MspR9I	CCNGG	2 cut(s)	63, 867
MvaI	CCWGG	2 cut(s)	63, 867
MwoI	GCNNNNNNNGC	8 cut(s)	349, 386, 401, 689, 698, 782, 843, 923
NdeI	CATATG	2 cut(s)	385, 475
NdeII	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
NlaIII	CATG	8 cut(s)	78, 90, 287, 349, 611, 682, 705, 809
NlaIV	GGNNCC	2 cut(s)	67, 632
NspI	RCATGY	2 cut(s)	90, 809
NspV	TTCGAA	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	90
PciI	ACATGT	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	504
PflMI	CCANNNNNTGG	3 cut(s)	75, 248, 613
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	319, 464
PpsI	GAGTC	2 cut(s)	319, 464
PscI	ACATGT	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	61, 865
PspGI	CCWGG	2 cut(s)	61, 865
PspN4I	GGNNCC	2 cut(s)	67, 632
PspPI	GGNCC	1 cut(s)	66
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
RsaI	GTAC	3 cut(s)	585, 767, 810
RsaNI	GTAC	3 cut(s)	584, 766, 809
RseI	CAYNNNNRTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	245, 645
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	6 cut(s)	199, 415, 482, 486, 518, 859
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	319, 464
ScrFI	CCNGG	2 cut(s)	63, 867
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	2 cut(s)	306, 679
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	891
SmoI	CTYRAG	1 cut(s)	891
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	6 cut(s)	158, 264, 313, 332, 368, 779
SsiI	CCGC	2 cut(s)	404, 683
SspMI	CTAG	2 cut(s)	35, 429
StyD4I	CCNGG	2 cut(s)	61, 865
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	583, 914, 932
TaiI	ACGT	1 cut(s)	880
TaqI	TCGA	4 cut(s)	300, 485, 502, 736
TasI	AATT	6 cut(s)	158, 264, 313, 332, 368, 779
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	2 cut(s)	245, 645
Tru9I	TTAA	2 cut(s)	245, 645
TscAI	CASTG	1 cut(s)	919
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	8 cut(s)	171, 249, 300, 541, 654, 661, 771, 843
TspRI	CASTG	1 cut(s)	919
Van91I	CCANNNNNTGG	3 cut(s)	75, 248, 613
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	4 cut(s)	158, 264, 332, 368
XceI	RCATGY	2 cut(s)	90, 809
XspI	CTAG	2 cut(s)	35, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.