Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016679

Physical Location & Seq

Genomic Coordinates Reverse (-)

20969748 .. 20972981

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGATAATAGTGAGGAAGTTCCATCAGCTCCTTCGACTCCTGTAACACCAGGGACTCCTGGTGCACCTCTCTTTGGCGGGTTCAAGCCAGATCTCAGAAGTAGTGGGATTGGTAGGAAATCCCTCCTCAGGAGCTGCAGCAGCTGCTTTACTGTTGATCCTTGGGCTTTGGAAGATGGCACATTGCAGCCTAAAGTTTCCTGTGCACTGCCTTACCCTCCTGTGTCACTTACACGAAAGGTGGGAGCTGAATTCTTAGGCACTTTCATACTAATATTTGCTGGGACAGCCACAGCCATAGTGAACCAAAAGACACAAGGGTCAGAGTCCCTGCTCGGCCTTGCAGCCTCCACCGGTCTCGCTGTCATGATTGTCATTCTCTCGACAGGCCACATTTCTGGGGCCCATCTCAACCCCTCAGTCACCATTGCCTTTGCTGCACTGAAACACTTCTCGTGGAAACATGTGCCATTATATGTGGGAGCACAAGTTGCGGCGTCAGTTTGTGCTGCGTTTGCGTTGAAGGTGATATTTCATCCAATCATGGGAGGTGGAGTGACAGTTCCTTCAGGGAGTTGGAGCCAGGCTTTTGCCTTGGAATTCATGATTAGTTTCAACCTCATGTTTGTTGTTACTGCTGTGGCCACCGACACTAGAGCAGTTGGAGAATTGGCGGGAATCGCGGTGGGAGCAACTGTCATGCTTAACATACTCATAGCTGGGGAAACAACAGGAGCTTCAATGAACCCAGTGAGAACGTTAGGGCCAGCCATAGCTGCAAACAATTACAAAGCCATATGGGTCTACCTCACTGCACCATTTCTTGGGGCGCTCTTTGGGGCGGGAACCTATACGGCTGTCAAGCTGCCTGAAGATGTTGACAGTATTGAAAAGCCTTCACCAAGGAGCTTCAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0007154 GO:0008150 GO:0008509 GO:0008643 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015144 GO:0015166 GO:0015168 GO:0015204 GO:0015238 GO:0015318 GO:0015698 GO:0015791 GO:0015793 GO:0015840 GO:0015850 GO:0015893 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034219 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0046715 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0080029 GO:0098656 GO:0098660 GO:0098661 GO:1901618

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

307

Amino Acids

31.79

Weight (kDa)

8.68

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	76 - 284	3.1e-51	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80760
fragaria_vesca	FvH4_6g28790
malus_domestica	MD17G1221800.v1.1
prunus_persica	Prupe.3G096600_v2.0.a1
pyrus_communis	pycom17g22580
rosa_chinensis	RchiOBHm_Chr2g0133211
rosa_laevigata	RLG00000019321
rosa_multiflora	Rmu_sc0000886.1_g000005
rosa_roxburghii	Rroxscaffold_2G00111300
rosa_rugosa	Rorug02G0310800
rosa_samantha	Rh2BG368900 Rh2CG346500 Rh2DG385900
rosa_wichuraiana	Rw2G029520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	1 cut(s)	804
AccII	CGCG	1 cut(s)	683
AciI	CCGC	5 cut(s)	78, 494, 674, 683, 842
AclI	AACGTT	1 cut(s)	758
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	251, 599
AcuI	CTGAAG	3 cut(s)	552, 891, 895
AcyI	GRCGYC	1 cut(s)	497
AfiI	CCNNNNNNNGG	4 cut(s)	74, 129, 545, 824
AflIII	ACRYGT	1 cut(s)	463
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	5 cut(s)	85, 523, 616, 741, 890
AjnI	CCWGG	3 cut(s)	49, 58, 582
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	9 cut(s)	29, 135, 144, 248, 719, 737, 776, 865, 909
AluI	AGCT	9 cut(s)	29, 135, 144, 248, 719, 737, 776, 865, 909
Alw21I	GWGCWC	3 cut(s)	67, 208, 487
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	2 cut(s)	63, 204
AlwI	GGATC	1 cut(s)	152
AlwNI	CAGNNNCTG	2 cut(s)	135, 144
AoxI	GGCC	5 cut(s)	337, 388, 402, 642, 764
ApaI	GGGCCC	1 cut(s)	406
ApaLI	GTGCAC	2 cut(s)	63, 204
ApoI	RAATTY	2 cut(s)	251, 599
AsiGI	ACCGGT	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	3 cut(s)	402, 403, 764
AsuHPI	GGTGA	3 cut(s)	415, 538, 891
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	3 cut(s)	67, 208, 406
BalI	TGGCCA	1 cut(s)	644
BanII	GRGCYC	1 cut(s)	406
BauI	CACGAG	1 cut(s)	454
Bbv12I	GWGCWC	3 cut(s)	67, 208, 487
BccI	CCATC	3 cut(s)	31, 170, 414
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	3 cut(s)	51, 60, 584
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	833
BglII	AGATCT	1 cut(s)	91
Bme1390I	CCNGG	3 cut(s)	51, 60, 584
BmgT120I	GGNCC	3 cut(s)	402, 403, 764
BmiI	GGNNCC	4 cut(s)	403, 404, 581, 847
BmrFI	CCNGG	3 cut(s)	51, 60, 584
BmrI	ACTGGG	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	50, 161, 594, 902
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	8 cut(s)	474, 504, 540, 546, 570, 576, 681, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 129, 545, 824
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	749
Bse21I	CCTNAGG	1 cut(s)	128
Bse3DI	GCAATG	2 cut(s)	182, 426
BseBI	CCWGG	3 cut(s)	51, 60, 584
BseDI	CCNNGG	4 cut(s)	50, 161, 594, 902
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	4 cut(s)	74, 129, 545, 824
BseMI	GCAATG	2 cut(s)	182, 426
BseMII	CTCAG	3 cut(s)	109, 142, 432
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	3 cut(s)	67, 208, 406
BseYI	CCCAGC	2 cut(s)	281, 719
BsgI	GTGCAG	2 cut(s)	423, 798
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	5 cut(s)	339, 390, 404, 644, 766
BshTI	ACCGGT	1 cut(s)	353
BsiHKAI	GWGCWC	3 cut(s)	67, 208, 487
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	3 cut(s)	67, 298, 313
BslI	CCNNNNNNNGG	4 cut(s)	74, 129, 545, 824
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	3 cut(s)	67, 298, 313
BsnI	GGCC	5 cut(s)	339, 390, 404, 644, 766
Bso31I	GGTCTC	1 cut(s)	362
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	4 cut(s)	67, 208, 406, 487
Bsp143I	GATC	2 cut(s)	91, 157
BspACI	CCGC	5 cut(s)	78, 494, 674, 683, 842
BspANI	GGCC	5 cut(s)	339, 390, 404, 644, 766
BspCNI	CTCAG	3 cut(s)	108, 141, 431
BspFNI	CGCG	1 cut(s)	683
BspHI	TCATGA	2 cut(s)	366, 603
BspLI	GGNNCC	4 cut(s)	403, 404, 581, 847
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	182, 426
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	749
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	4 cut(s)	50, 161, 594, 902
BssMI	GATC	2 cut(s)	91, 157
BssNI	GRCGYC	1 cut(s)	497
BssSI	CACGAG	1 cut(s)	454
BssT1I	CCWWGG	3 cut(s)	161, 594, 902
Bst2BI	CACGAG	1 cut(s)	454
Bst2UI	CCWGG	3 cut(s)	51, 60, 584
Bst4CI	ACNGT	4 cut(s)	154, 562, 697, 884
BstACI	GRCGYC	1 cut(s)	497
BstAPI	GCANNNNNTGC	2 cut(s)	144, 491
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	4 cut(s)	95, 128, 256, 418
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	683
BstH2I	RGCGCY	1 cut(s)	833
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	2 cut(s)	94, 160
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	91, 157
BstMWI	GCNNNNNNNGC	9 cut(s)	141, 144, 287, 437, 491, 515, 680, 689, 776
BstNI	CCWGG	3 cut(s)	51, 60, 584
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	3 cut(s)	49, 58, 582
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	3 cut(s)	67, 208, 406
BstUI	CGCG	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	339, 390, 404, 644, 766
BtsCI	GGATG	1 cut(s)	535
BtsI	GCAGTG	2 cut(s)	206, 810
BtsIMutI	CAGTG	4 cut(s)	206, 440, 756, 810
Cac8I	GCNNGC	1 cut(s)	768
CaiI	CAGNNNCTG	2 cut(s)	135, 144
CciI	TCATGA	2 cut(s)	366, 603
CfoI	GCGC	1 cut(s)	832
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	402, 403, 764
CseI	GACGC	1 cut(s)	486
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	6 cut(s)	367, 464, 544, 604, 622, 700
DdeI	CTNAG	4 cut(s)	95, 128, 256, 418
DpnI	GATC	2 cut(s)	93, 159
DpnII	GATC	2 cut(s)	91, 157
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	642
Eco130I	CCWWGG	3 cut(s)	161, 594, 902
Eco24I	GRGCYC	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	362
Eco57I	CTGAAG	3 cut(s)	552, 891, 895
Eco81I	CCTNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	402
EcoRI	GAATTC	2 cut(s)	251, 599
EcoRII	CCWGG	3 cut(s)	49, 58, 582
EcoT14I	CCWWGG	3 cut(s)	161, 594, 902
EcoT38I	GRGCYC	1 cut(s)	406
ErhI	CCWWGG	3 cut(s)	161, 594, 902
FaeI	CATG	6 cut(s)	370, 467, 547, 607, 625, 703
FaqI	GGGAC	3 cut(s)	67, 298, 313
FatI	CATG	6 cut(s)	366, 463, 543, 603, 621, 699
FauI	CCCGC	3 cut(s)	71, 667, 835
FauNDI	CATATG	1 cut(s)	797
FblI	GTMKAC	1 cut(s)	804
FokI	GGATG	1 cut(s)	522
FriOI	GRGCYC	1 cut(s)	406
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	831
GsaI	CCCAGC	2 cut(s)	285, 723
HaeII	RGCGCY	1 cut(s)	833
HaeIII	GGCC	5 cut(s)	339, 390, 404, 644, 766
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	1 cut(s)	832
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	6 cut(s)	370, 467, 547, 607, 625, 703
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	4 cut(s)	37, 55, 326, 678
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	3 cut(s)	415, 538, 891
Hpy166II	GTNNAC	5 cut(s)	65, 206, 304, 805, 880
Hpy188I	TCNGA	3 cut(s)	98, 325, 914
Hpy188III	TCNNGA	4 cut(s)	130, 367, 382, 604
Hpy8I	GTNNAC	5 cut(s)	65, 206, 304, 805, 880
HpyAV	CCTTC	4 cut(s)	42, 517, 576, 906
HpyCH4III	ACNGT	4 cut(s)	154, 562, 697, 884
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	8 cut(s)	65, 138, 187, 206, 344, 440, 779, 815
HpyF10VI	GCNNNNNNNGC	9 cut(s)	141, 144, 287, 437, 491, 515, 680, 689, 776
HpyF3I	CTNAG	4 cut(s)	95, 128, 256, 418
HpySE526I	ACGT	1 cut(s)	758
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	6 cut(s)	370, 467, 547, 607, 625, 703
HspAI	GCGC	1 cut(s)	830
Kzo9I	GATC	2 cut(s)	91, 157
LmnI	GCTCC	8 cut(s)	34, 132, 245, 482, 579, 689, 734, 906
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	5 cut(s)	43, 225, 421, 556, 631
MalI	GATC	2 cut(s)	93, 159
MboI	GATC	2 cut(s)	91, 157
MboII	GAAGA	2 cut(s)	185, 884
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	4 cut(s)	67, 208, 406, 487
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	4 cut(s)	251, 599, 668, 784
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	3 cut(s)	31, 49, 335
MmeI	TCCRAC	2 cut(s)	557, 643
Mox20I	TGGCCA	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	1 cut(s)	705
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	3 cut(s)	51, 60, 584
MvaI	CCWGG	3 cut(s)	51, 60, 584
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	9 cut(s)	141, 144, 287, 437, 491, 515, 680, 689, 776
NdeI	CATATG	1 cut(s)	797
NdeII	GATC	2 cut(s)	91, 157
NlaIII	CATG	6 cut(s)	370, 467, 547, 607, 625, 703
NlaIV	GGNNCC	4 cut(s)	403, 404, 581, 847
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	225, 421, 556
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	2 cut(s)	366, 603
PciI	ACATGT	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	678
PflMI	CCANNNNNTGG	1 cut(s)	824
PinAI	ACCGGT	1 cut(s)	353
PleI	GAGTC	3 cut(s)	31, 49, 334
PpsI	GAGTC	3 cut(s)	31, 49, 334
PscI	ACATGT	1 cut(s)	463
Psp1406I	AACGTT	1 cut(s)	758
Psp6I	CCWGG	3 cut(s)	49, 58, 582
PspFI	CCCAGC	2 cut(s)	281, 719
PspGI	CCWGG	3 cut(s)	49, 58, 582
PspN4I	GGNNCC	4 cut(s)	403, 404, 581, 847
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	3 cut(s)	402, 403, 764
PstI	CTGCAG	1 cut(s)	140
PstNI	CAGNNNCTG	2 cut(s)	135, 144
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	705
Sau3AI	GATC	2 cut(s)	91, 157
Sau96I	GGNCC	3 cut(s)	402, 403, 764
SchI	GAGTC	3 cut(s)	31, 49, 335
ScrFI	CCNGG	3 cut(s)	51, 60, 584
SduI	GDGCHC	4 cut(s)	67, 208, 406, 487
SfcI	CTRYAG	1 cut(s)	136
Sse9I	AATT	4 cut(s)	251, 599, 668, 784
SsiI	CCGC	5 cut(s)	78, 494, 674, 683, 842
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	3 cut(s)	49, 58, 582
StyI	CCWWGG	3 cut(s)	161, 594, 902
TaaI	ACNGT	4 cut(s)	154, 562, 697, 884
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	2 cut(s)	35, 383
TasI	AATT	4 cut(s)	251, 599, 668, 784
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	1 cut(s)	678
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TscAI	CASTG	4 cut(s)	213, 447, 756, 817
TseFI	GTSAC	3 cut(s)	225, 421, 556
Tsp45I	GTSAC	3 cut(s)	225, 421, 556
TspDTI	ATGAA	4 cut(s)	256, 524, 592, 758
TspRI	CASTG	4 cut(s)	213, 447, 756, 817
Van91I	CCANNNNNTGG	1 cut(s)	824
VneI	GTGCAC	2 cut(s)	63, 204
XapI	RAATTY	2 cut(s)	251, 599
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	804
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.