Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006823

Physical Location & Seq

Genomic Coordinates Reverse (-)

24313306 .. 24314081

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTTGGGGTCGTCTTCCCGAATCACAGCTTCCCAATGGACATCTCCTCCTTCTCCCAAATCGACACCTTCCACTGGATTCTCGACATGAACACCCTCGTCGGGGAGGTGTACGATCAAGTCCGCGAGCTCTGCATATTCCTCTTAAACAACTTCACACTCCCGCCGGACAAAGCCCTAGCCGTCTACATCCAGTCCCCGGGCTCCGCTTTCTTCTTCTGCGGCGCCGTCACCGTGGCTAGGCCTTCGGCGGTGCTTTCTCTGCCCTGGCCCGAGCCCGGCGGCCAGCTCCAGCTCACAGCCGACGCGACGCCACTGTCGGCCAAAATCGGCGTGTCGGTGGAGGACCTGGCGACGCTGCCGTCGCTGGATGTCACCGCCGAGAAGCGAATCGAGCGGCTGGCGATGAAGGTTGGGGAGAATCTATTCAATTTCATGCAGTCGTTTTGCGGCGTGGATGGGAGCAAGCTGGTGGTGCCGATGGACATATTGGACCGGTGGTTCAAGAAGTTTCAGGAGAGGGCTAAGCGCGATCCCGAGTACTTGAAAGGCTTTGCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF775

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

5.0

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hikeshi-like_N	PF05603	19 - 119	7.6e-09	Hikeshi-like, N-terminal domain
Hikeshi-like_C	PF21057	131 - 183	2.1e-12	Hikeshi-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66080
fragaria_vesca	FvH4_1g28840 FvH4_1g28840 FvH4_1g28840 FvH4_1g28840
malus_domestica	MD09G1263000.v1.1 MD17G1258000.v1.1
prunus_persica	Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1
pyrus_communis	pycom09g17730 pycom17g26000
rosa_chinensis	RchiOBHm_Chr3g0493321
rosa_laevigata	RLG00000022719
rosa_multiflora	Rmu_sc0000828.1_g000002 Rmu_sc0006010.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391640
rosa_rugosa	Rorug02G0465000 Rorug03G0260300.1 Rorug03G0260400
rosa_samantha	Rh3AG309500 Rh3BG345700 Rh3CG342800 Rh3DG344600
rosa_wichuraiana	Rw3G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	562
AasI	GACNNNNNNGTC	2 cut(s)	316, 361
AccB1I	GGYRCC	2 cut(s)	224, 475
AccBSI	CCGCTC	1 cut(s)	397
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	3 cut(s)	126, 308, 531
AciI	CCGC	9 cut(s)	124, 164, 207, 222, 251, 282, 378, 397, 450
AclWI	GGATC	1 cut(s)	527
AcoI	YGGCCR	2 cut(s)	283, 321
AcyI	GRCGYC	2 cut(s)	225, 311
AfaI	GTAC	2 cut(s)	113, 542
AfiI	CCNNNNNNNGG	6 cut(s)	75, 102, 103, 199, 240, 278
AgeI	ACCGGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	430, 505, 547
AjnI	CCWGG	2 cut(s)	266, 348
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	5 cut(s)	30, 130, 289, 295, 469
AluI	AGCT	5 cut(s)	30, 130, 289, 295, 469
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	527
Ama87I	CYCGRG	3 cut(s)	199, 272, 536
AoxI	GGCC	4 cut(s)	242, 269, 283, 321
ApeKI	GCWGC	1 cut(s)	358
AsiGI	ACCGGT	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	227, 531
AspS9I	GGNCC	3 cut(s)	270, 346, 493
AsuC2I	CCSGG	3 cut(s)	200, 201, 279
AsuHPI	GGTGA	2 cut(s)	223, 367
AvaI	CYCGRG	3 cut(s)	199, 272, 536
AvaII	GGWCC	2 cut(s)	346, 493
BanI	GGYRCC	2 cut(s)	224, 475
BanII	GRGCYC	3 cut(s)	132, 206, 279
BbsI	GAAGAC	1 cut(s)	7
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	2 cut(s)	452, 475
BceAI	ACGGC	3 cut(s)	167, 212, 346
BciT130I	CCWGG	2 cut(s)	268, 350
BcnI	CCSGG	3 cut(s)	200, 201, 279
BfaI	CTAG	2 cut(s)	179, 240
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	5 cut(s)	223, 283, 359, 398, 451
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	5 cut(s)	224, 284, 360, 399, 452
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	5 cut(s)	200, 201, 268, 279, 350
Bme18I	GGWCC	2 cut(s)	346, 493
BmeT110I	CYCGRG	3 cut(s)	199, 272, 536
BmgT120I	GGNCC	3 cut(s)	270, 346, 493
BmiI	GGNNCC	3 cut(s)	205, 226, 477
BmrFI	CCNGG	5 cut(s)	200, 201, 268, 279, 350
BpiI	GAAGAC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuMI	CCSGG	3 cut(s)	200, 201, 279
BsaHI	GRCGYC	2 cut(s)	225, 311
BsaJI	CCNNGG	4 cut(s)	198, 199, 234, 266
BsaWI	WCCGGW	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 102, 103, 199, 240, 278
Bse118I	RCCGGY	1 cut(s)	495
Bse1I	ACTGG	2 cut(s)	80, 193
BseBI	CCWGG	2 cut(s)	268, 350
BseDI	CCNNGG	4 cut(s)	198, 199, 234, 266
BseGI	GGATG	3 cut(s)	189, 376, 463
BseLI	CCNNNNNNNGG	6 cut(s)	75, 102, 103, 199, 240, 278
BseNI	ACTGG	2 cut(s)	80, 193
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	345
Bsh1236I	CGCG	3 cut(s)	126, 308, 531
BshFI	GGCC	4 cut(s)	244, 271, 285, 323
BshNI	GGYRCC	2 cut(s)	224, 475
BshTI	ACCGGT	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	3 cut(s)	199, 272, 536
BsiSI	CCGG	4 cut(s)	167, 200, 279, 496
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	6 cut(s)	75, 102, 103, 199, 240, 278
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	4 cut(s)	244, 271, 285, 323
BsoBI	CYCGRG	3 cut(s)	199, 272, 536
Bsp1286I	GDGCHC	3 cut(s)	132, 206, 279
Bsp143I	GATC	2 cut(s)	115, 532
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	9 cut(s)	124, 164, 207, 222, 251, 282, 378, 397, 450
BspANI	GGCC	4 cut(s)	244, 271, 285, 323
BspFNI	CGCG	3 cut(s)	126, 308, 531
BspLI	GGNNCC	3 cut(s)	205, 226, 477
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	2 cut(s)	224, 475
BsrBI	CCGCTC	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	80, 193
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	4 cut(s)	198, 199, 234, 266
BssMI	GATC	2 cut(s)	115, 532
BssNI	GRCGYC	2 cut(s)	225, 311
Bst2UI	CCWGG	2 cut(s)	268, 350
Bst4CI	ACNGT	2 cut(s)	235, 318
BstACI	GRCGYC	2 cut(s)	225, 311
BstC8I	GCNNGC	4 cut(s)	128, 287, 402, 467
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	189, 376, 463
BstFNI	CGCG	3 cut(s)	126, 308, 531
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	227, 531
BstKTI	GATC	2 cut(s)	118, 535
BstMBI	GATC	2 cut(s)	115, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 262, 364, 394, 475
BstNI	CCWGG	2 cut(s)	268, 350
BstSCI	CCNGG	5 cut(s)	198, 199, 266, 277, 348
BstUI	CGCG	3 cut(s)	126, 308, 531
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	7
BsuRI	GGCC	4 cut(s)	244, 271, 285, 323
BtgI	CCRYGG	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	189, 376, 463
BtsIMutI	CAGTG	2 cut(s)	73, 314
Cac8I	GCNNGC	4 cut(s)	128, 287, 402, 467
CfoI	GCGC	2 cut(s)	227, 531
Cfr10I	RCCGGY	1 cut(s)	495
Cfr13I	GGNCC	3 cut(s)	270, 346, 493
Cfr9I	CCCGGG	1 cut(s)	199
CseI	GACGC	3 cut(s)	314, 319, 364
Csp6I	GTAC	2 cut(s)	112, 541
CspAI	ACCGGT	1 cut(s)	495
CviAII	CATG	2 cut(s)	88, 436
CviQI	GTAC	2 cut(s)	112, 541
DdeI	CTNAG	1 cut(s)	525
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	2 cut(s)	117, 534
DpnII	GATC	2 cut(s)	115, 532
DrdI	GACNNNNNNGTC	2 cut(s)	316, 361
DseDI	GACNNNNNNGTC	2 cut(s)	316, 361
EaeI	YGGCCR	2 cut(s)	283, 321
Ecl136II	GAGCTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	244
Eco24I	GRGCYC	3 cut(s)	132, 206, 279
Eco47I	GGWCC	2 cut(s)	346, 493
Eco53kI	GAGCTC	1 cut(s)	130
Eco88I	CYCGRG	3 cut(s)	199, 272, 536
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	266, 348
EcoT38I	GRGCYC	3 cut(s)	132, 206, 279
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	2 cut(s)	91, 439
FaiI	YATR	5 cut(s)	89, 137, 437, 488, 562
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	87, 435
FauI	CCCGC	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	223, 283, 359, 398, 451
FokI	GGATG	3 cut(s)	176, 383, 470
FriOI	GRGCYC	3 cut(s)	132, 206, 279
Fsp4HI	GCNGC	5 cut(s)	223, 283, 359, 398, 451
FspBI	CTAG	2 cut(s)	179, 240
GlaI	GCGC	2 cut(s)	226, 530
GluI	GCNGC	5 cut(s)	223, 283, 359, 398, 451
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	244, 271, 285, 323
HapII	CCGG	4 cut(s)	167, 200, 279, 496
HgaI	GACGC	3 cut(s)	314, 319, 364
HhaI	GCGC	2 cut(s)	227, 531
Hin1I	GRCGYC	2 cut(s)	225, 311
Hin1II	CATG	2 cut(s)	91, 439
Hin6I	GCGC	2 cut(s)	225, 529
HinP1I	GCGC	2 cut(s)	225, 529
HinfI	GANTC	4 cut(s)	22, 79, 390, 421
HpaII	CCGG	4 cut(s)	167, 200, 279, 496
HphI	GGTGA	2 cut(s)	223, 367
Hpy166II	GTNNAC	2 cut(s)	112, 187
Hpy188III	TCNNGA	5 cut(s)	19, 83, 505, 515, 536
Hpy8I	GTNNAC	2 cut(s)	112, 187
Hpy99I	CGWCG	5 cut(s)	104, 308, 313, 358, 367
HpyAV	CCTTC	4 cut(s)	61, 79, 255, 403
HpyCH4III	ACNGT	2 cut(s)	235, 318
HpyCH4V	TGCA	2 cut(s)	135, 439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 262, 364, 394, 475
HpyF3I	CTNAG	1 cut(s)	525
Hsp92I	GRCGYC	2 cut(s)	225, 311
Hsp92II	CATG	2 cut(s)	91, 439
HspAI	GCGC	2 cut(s)	225, 529
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	115, 532
LmnI	GCTCC	3 cut(s)	209, 294, 462
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	179, 240
MaeIII	GTNAC	2 cut(s)	229, 373
MalI	GATC	2 cut(s)	117, 534
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	2 cut(s)	115, 532
MboII	GAAGA	3 cut(s)	7, 205, 208
MhlI	GDGCHC	3 cut(s)	132, 206, 279
MluCI	AATT	1 cut(s)	430
Mly113I	GGCGCC	1 cut(s)	225
MnlI	CCTC	6 cut(s)	58, 100, 107, 152, 337, 513
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	146
MspI	CCGG	4 cut(s)	167, 200, 279, 496
MspR9I	CCNGG	5 cut(s)	200, 201, 268, 279, 350
MvaI	CCWGG	2 cut(s)	268, 350
MvnI	CGCG	3 cut(s)	126, 308, 531
MwoI	GCNNNNNNNGC	5 cut(s)	132, 262, 364, 394, 475
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	3 cut(s)	200, 201, 279
NdeII	GATC	2 cut(s)	115, 532
NlaIII	CATG	2 cut(s)	91, 439
NlaIV	GGNNCC	3 cut(s)	205, 226, 477
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	2 cut(s)	229, 373
PceI	AGGCCT	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	4 cut(s)	22, 79, 390, 421
PinAI	ACCGGT	1 cut(s)	495
PkrI	GCNGC	5 cut(s)	224, 284, 360, 399, 452
PluTI	GGCGCC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	346
PsiI	TTATAA	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	266, 348
PspGI	CCWGG	2 cut(s)	266, 348
PspN4I	GGNNCC	3 cut(s)	205, 226, 477
PspPI	GGNCC	3 cut(s)	270, 346, 493
PspPPI	RGGWCCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	113, 542
RsaNI	GTAC	2 cut(s)	112, 541
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	5 cut(s)	223, 283, 359, 398, 451
Sau3AI	GATC	2 cut(s)	115, 532
Sau96I	GGNCC	3 cut(s)	270, 346, 493
ScaI	AGTACT	1 cut(s)	542
ScrFI	CCNGG	5 cut(s)	200, 201, 268, 279, 350
SduI	GDGCHC	3 cut(s)	132, 206, 279
SetI	ASST	9 cut(s)	32, 71, 111, 132, 291, 297, 351, 414, 471
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	346, 493
SmaI	CCCGGG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	430
SseBI	AGGCCT	1 cut(s)	244
SsiI	CCGC	9 cut(s)	124, 164, 207, 222, 251, 282, 378, 397, 450
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	179, 240
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	244
StyD4I	CCNGG	5 cut(s)	198, 199, 266, 277, 348
TaaI	ACNGT	2 cut(s)	235, 318
TaqI	TCGA	3 cut(s)	63, 84, 393
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	4 cut(s)	225, 285, 400, 453
TfiI	GAWTC	4 cut(s)	22, 79, 390, 421
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	80, 321
TseFI	GTSAC	2 cut(s)	229, 373
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	2 cut(s)	229, 373
TspDTI	ATGAA	3 cut(s)	104, 422, 424
TspMI	CCCGGG	1 cut(s)	199
TspRI	CASTG	2 cut(s)	80, 321
VpaK11BI	GGWCC	2 cut(s)	346, 493
XmaI	CCCGGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	2 cut(s)	179, 240
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.