Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0018495

Physical Location & Seq

Genomic Coordinates Forward (+)

24957212 .. 24958495

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26660.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAGGCTTGTGGTGGAGCTGCAGTGATGGGTTCTCTTCAACAACCCGCTTGGACCAAAGGAACAATTTTTTCAAACAAGGGGCTTACCGGCAGTGGATTTTCCCATCAACTAAACCTCAATTGTGTGAAGCCCGTTAGATCTTCTTACATAGAAGGAAGCTTGGTTACTGGAAGGCCATCCTCTTCTGTCACTGTACCTTTGCCTGAAATTGGTGGTAATGGAAGCAGTTTTGTAGACAACGGATTAAGTGAGGCTGACCCTGAGGTGCGTGCTATTATTGATATGGAGAAGCAGCGACAGTTCAAGAGTCTTGAGCTTATTGCCTCAGAAAATTTTACTTATCGGGCAGTGATGGAGGCAGTTGGCTCATGTCTAACGAACAAGTATTCAGAAGGTTTACCAGGTAAAAGGTACTATGGTGGCAATGAGCATATTGATGAGCTTGAAACACTTTGCCAAAAGAGGGCTCTTGATGCATTTCACTTAGATGGAAAGAAGTGGGGTGTTAATGTTCAACCATTATCTGGTTCCCCTGCTAATTTCGAGGTTTATACCGCAATTCTTAAACCTCATCGATCGTCTCATGGGTTTGGACTTGTCTCACGGAGGACATTTGTCTCATGGTTTCATGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016740 GO:0016741 GO:0016742 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

214

Amino Acids

23.15

Weight (kDa)

7.71

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018495)

Species	Orthologous Gene IDs
malus_domestica	MD09G1269200.v1.1
pyrus_communis	pycom17g26660
rosa_chinensis	RchiOBHm_Chr1g0360671 RchiOBHm_Chr7g0223221
rosa_multiflora	Rmu_co8421897.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301080 Rroxscaffold_7G00212560
rosa_samantha	Rh3BG358300 Rh6AG220400
rosa_wichuraiana	Rw6G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	2 cut(s)	48, 558
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	2 cut(s)	198, 416
AfiI	CCNNNNNNNGG	3 cut(s)	212, 466, 527
AgsI	TTSAA	5 cut(s)	41, 75, 307, 449, 518
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	4 cut(s)	20, 162, 319, 445
AluI	AGCT	4 cut(s)	20, 162, 319, 445
Alw26I	GTCTC	3 cut(s)	588, 607, 625
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	20, 295
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BanII	GRGCYC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbvI	GCAGC	2 cut(s)	7, 307
BccI	CCATC	5 cut(s)	22, 114, 187, 349, 485
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	588, 607, 625
BfmI	CTRYAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	2 cut(s)	21, 296
BlsI	GCNGC	2 cut(s)	22, 297
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	466
BoxI	GACNNNNGTC	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 466, 527
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	175
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	577
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	212, 466, 527
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	2 cut(s)	255, 342
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	7, 307
Bsh1285I	CGRYCG	1 cut(s)	581
BshFI	GGCC	1 cut(s)	178
BshVI	ATCGAT	1 cut(s)	577
BsiEI	CGRYCG	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	212, 466, 527
BsmAI	GTCTC	3 cut(s)	588, 607, 625
BsmBI	CGTCTC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	140, 578
BspACI	CCGC	2 cut(s)	48, 558
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	256, 341
BspDI	ATCGAT	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	2 cut(s)	140, 578
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	196, 303
Bst6I	CTCTTC	2 cut(s)	42, 190
BstC8I	GCNNGC	2 cut(s)	6, 273
BstDEI	CTNAG	3 cut(s)	264, 328, 487
BstF5I	GGATG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	143, 581
BstMAI	GTCTC	3 cut(s)	588, 607, 625
BstMBI	GATC	2 cut(s)	140, 578
BstMCI	CGRYCG	1 cut(s)	581
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	405
BstPAI	GACNNNNGTC	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	7, 307
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	3 cut(s)	30, 100, 357
BtsIMutI	CAGTG	4 cut(s)	30, 100, 192, 357
Cac8I	GCNNGC	2 cut(s)	6, 273
CciI	TCATGA	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	54
ClaI	ATCGAT	1 cut(s)	577
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	197, 415
CviAII	CATG	4 cut(s)	372, 587, 624, 632
CviQI	GTAC	2 cut(s)	197, 415
DdeI	CTNAG	3 cut(s)	264, 328, 487
DpnI	GATC	2 cut(s)	142, 580
DpnII	GATC	2 cut(s)	140, 578
Eam1104I	CTCTTC	2 cut(s)	42, 190
EarI	CTCTTC	2 cut(s)	42, 190
Eco24I	GRGCYC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	4 cut(s)	375, 590, 627, 635
FaiI	YATR	9 cut(s)	152, 287, 373, 420, 435, 555, 588, 625, 633
FatI	CATG	4 cut(s)	371, 586, 623, 631
FauI	CCCGC	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	21, 296
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	21, 296
GluI	GCNGC	2 cut(s)	21, 296
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	4 cut(s)	375, 590, 627, 635
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	2 cut(s)	310, 635
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	2 cut(s)	238, 401
Hpy188I	TCNGA	2 cut(s)	331, 394
Hpy188III	TCNNGA	4 cut(s)	307, 314, 473, 632
Hpy8I	GTNNAC	2 cut(s)	238, 401
HpyAV	CCTTC	3 cut(s)	149, 168, 389
HpyCH4III	ACNGT	2 cut(s)	196, 303
HpyCH4V	TGCA	3 cut(s)	4, 23, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	3 cut(s)	264, 328, 487
Hsp92II	CATG	4 cut(s)	375, 590, 627, 635
Kzo9I	GATC	2 cut(s)	140, 578
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	8 cut(s)	103, 156, 219, 276, 390, 417, 513, 549
Lsp1109I	GCAGC	2 cut(s)	7, 307
LweI	GCATC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	166, 190
MalI	GATC	2 cut(s)	142, 580
MboI	GATC	2 cut(s)	140, 578
MboII	GAAGA	3 cut(s)	29, 135, 177
MfeI	CAATTG	1 cut(s)	121
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	6 cut(s)	66, 121, 210, 334, 541, 561
MlyI	GAGTC	2 cut(s)	319, 629
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	3 cut(s)	248, 510, 567
MslI	CAYNNNNRTG	2 cut(s)	438, 489
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	476
NdeII	GATC	2 cut(s)	140, 578
NlaIII	CATG	4 cut(s)	375, 590, 627, 635
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	481
PagI	TCATGA	1 cut(s)	631
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	22, 297
Ple19I	CGATCG	1 cut(s)	581
PleI	GAGTC	2 cut(s)	318, 629
PpsI	GAGTC	2 cut(s)	318, 629
PshAI	GACNNNNGTC	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	198, 416
RsaNI	GTAC	2 cut(s)	197, 415
RseI	CAYNNNNRTG	2 cut(s)	438, 489
SaqAI	TTAA	3 cut(s)	248, 510, 567
SatI	GCNGC	2 cut(s)	21, 296
Sau3AI	GATC	2 cut(s)	140, 578
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	319, 629
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	472
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	2 cut(s)	438, 489
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	6 cut(s)	66, 121, 210, 334, 541, 561
SsiI	CCGC	2 cut(s)	48, 558
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	196, 303
TaqI	TCGA	2 cut(s)	546, 577
TasI	AATT	6 cut(s)	66, 121, 210, 334, 541, 561
Tru1I	TTAA	3 cut(s)	248, 510, 567
Tru9I	TTAA	3 cut(s)	248, 510, 567
TscAI	CASTG	4 cut(s)	30, 100, 199, 357
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	20, 295
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	620
TspGWI	ACGGA	2 cut(s)	258, 622
TspRI	CASTG	4 cut(s)	30, 100, 199, 357
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.