Serine hydroxymethyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1269200.v1.1 |
| pyrus_communis | pycom17g26660 |
| rosa_chinensis | RchiOBHm_Chr1g0360671 RchiOBHm_Chr7g0223221 |
| rosa_multiflora | Rmu_co8421897.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00301080 Rroxscaffold_7G00212560 |
| rosa_samantha | Rh3BG358300 Rh6AG220400 |
| rosa_wichuraiana | Rw6G019320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 185, 266, 299 |
| AclWI | GGATC | 2 cut(s) | 284, 297 |
| AcsI | RAATTY | 1 cut(s) | 416 |
| AcyI | GRCGYC | 1 cut(s) | 165 |
| AfaI | GTAC | 1 cut(s) | 62 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 124, 185, 254, 266, 299 |
| AgsI | TTSAA | 3 cut(s) | 107, 176, 283 |
| AjnI | CCWGG | 2 cut(s) | 49, 129 |
| AluBI | AGCT | 3 cut(s) | 68, 103, 197 |
| AluI | AGCT | 3 cut(s) | 68, 103, 197 |
| Alw26I | GTCTC | 1 cut(s) | 26 |
| AlwI | GGATC | 2 cut(s) | 284, 297 |
| AoxI | GGCC | 3 cut(s) | 126, 342, 379 |
| ApaI | GGGCCC | 1 cut(s) | 130 |
| ApoI | RAATTY | 1 cut(s) | 416 |
| AspS9I | GGNCC | 5 cut(s) | 126, 127, 257, 356, 379 |
| AsuC2I | CCSGG | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| AsuII | TTCGAA | 1 cut(s) | 38 |
| AvaII | GGWCC | 2 cut(s) | 257, 356 |
| BaeGI | GKGCMC | 1 cut(s) | 130 |
| BamHI | GGATCC | 1 cut(s) | 289 |
| BanII | GRGCYC | 1 cut(s) | 130 |
| BccI | CCATC | 2 cut(s) | 143, 329 |
| BciT130I | CCWGG | 2 cut(s) | 51, 131 |
| BciVI | GTATCC | 1 cut(s) | 127 |
| BcnI | CCSGG | 1 cut(s) | 341 |
| BcoDI | GTCTC | 1 cut(s) | 26 |
| BfaI | CTAG | 1 cut(s) | 146 |
| BfuI | GTATCC | 1 cut(s) | 127 |
| Bme1390I | CCNGG | 3 cut(s) | 51, 131, 341 |
| Bme18I | GGWCC | 2 cut(s) | 257, 356 |
| BmgT120I | GGNCC | 5 cut(s) | 126, 127, 257, 356, 379 |
| BmiI | GGNNCC | 5 cut(s) | 128, 258, 291, 358, 380 |
| BmrFI | CCNGG | 3 cut(s) | 51, 131, 341 |
| BpmI | CTGGAG | 1 cut(s) | 177 |
| Bpu14I | TTCGAA | 1 cut(s) | 38 |
| BpuMI | CCSGG | 1 cut(s) | 341 |
| BsaHI | GRCGYC | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 2 cut(s) | 50, 129 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 294, 324 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 124, 185, 254, 266, 299 |
| Bse1I | ACTGG | 1 cut(s) | 293 |
| BseBI | CCWGG | 2 cut(s) | 51, 131 |
| BseDI | CCNNGG | 2 cut(s) | 50, 129 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 124, 185, 254, 266, 299 |
| BseMII | CTCAG | 1 cut(s) | 419 |
| BseNI | ACTGG | 1 cut(s) | 293 |
| BseSI | GKGCMC | 1 cut(s) | 130 |
| BshFI | GGCC | 3 cut(s) | 128, 344, 381 |
| BsiSI | CCGG | 1 cut(s) | 341 |
| BslFI | GGGAC | 1 cut(s) | 342 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 124, 185, 254, 266, 299 |
| BsmAI | GTCTC | 1 cut(s) | 26 |
| BsmFI | GGGAC | 1 cut(s) | 342 |
| BsnI | GGCC | 3 cut(s) | 128, 344, 381 |
| Bsp119I | TTCGAA | 1 cut(s) | 38 |
| Bsp120I | GGGCCC | 1 cut(s) | 126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 130 |
| Bsp143I | GATC | 2 cut(s) | 235, 289 |
| BspANI | GGCC | 3 cut(s) | 128, 344, 381 |
| BspCNI | CTCAG | 1 cut(s) | 418 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 5 cut(s) | 128, 258, 291, 358, 380 |
| BspPI | GGATC | 2 cut(s) | 284, 297 |
| BspT104I | TTCGAA | 1 cut(s) | 38 |
| BsrI | ACTGG | 1 cut(s) | 293 |
| BssECI | CCNNGG | 2 cut(s) | 50, 129 |
| BssMI | GATC | 2 cut(s) | 235, 289 |
| BssNI | GRCGYC | 1 cut(s) | 165 |
| Bst2UI | CCWGG | 2 cut(s) | 51, 131 |
| BstACI | GRCGYC | 1 cut(s) | 165 |
| BstBI | TTCGAA | 1 cut(s) | 38 |
| BstC8I | GCNNGC | 2 cut(s) | 70, 402 |
| BstDEI | CTNAG | 3 cut(s) | 113, 251, 405 |
| BstKTI | GATC | 2 cut(s) | 238, 292 |
| BstMAI | GTCTC | 1 cut(s) | 26 |
| BstMBI | GATC | 2 cut(s) | 235, 289 |
| BstNI | CCWGG | 2 cut(s) | 51, 131 |
| BstNSI | RCATGY | 1 cut(s) | 404 |
| BstSCI | CCNGG | 3 cut(s) | 49, 129, 339 |
| BstSLI | GKGCMC | 1 cut(s) | 130 |
| BstX2I | RGATCY | 1 cut(s) | 289 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 374 |
| BstYI | RGATCY | 1 cut(s) | 289 |
| BsuI | GTATCC | 1 cut(s) | 127 |
| BsuRI | GGCC | 3 cut(s) | 128, 344, 381 |
| Cac8I | GCNNGC | 2 cut(s) | 70, 402 |
| CciI | TCATGA | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 5 cut(s) | 126, 127, 257, 356, 379 |
| CseI | GACGC | 2 cut(s) | 61, 154 |
| Csp6I | GTAC | 1 cut(s) | 61 |
| CviAII | CATG | 3 cut(s) | 233, 244, 401 |
| CviJI | RGCY | 9 cut(s) | 15, 68, 103, 117, 128, 197, 344, 381, 425 |
| CviKI_1 | RGCY | 9 cut(s) | 15, 68, 103, 117, 128, 197, 344, 381, 425 |
| CviQI | GTAC | 1 cut(s) | 61 |
| DdeI | CTNAG | 3 cut(s) | 113, 251, 405 |
| DpnI | GATC | 2 cut(s) | 237, 291 |
| DpnII | GATC | 2 cut(s) | 235, 289 |
| Eco24I | GRGCYC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 2 cut(s) | 257, 356 |
| EcoO109I | RGGNCCY | 3 cut(s) | 126, 127, 379 |
| EcoRII | CCWGG | 2 cut(s) | 49, 129 |
| EcoT38I | GRGCYC | 1 cut(s) | 130 |
| FaeI | CATG | 3 cut(s) | 236, 247, 404 |
| FaiI | YATR | 7 cut(s) | 79, 213, 215, 234, 245, 363, 402 |
| FaqI | GGGAC | 1 cut(s) | 342 |
| FatI | CATG | 3 cut(s) | 232, 243, 400 |
| FriOI | GRGCYC | 1 cut(s) | 130 |
| FspBI | CTAG | 1 cut(s) | 146 |
| GsuI | CTGGAG | 1 cut(s) | 177 |
| HaeIII | GGCC | 3 cut(s) | 128, 344, 381 |
| HapII | CCGG | 1 cut(s) | 341 |
| HgaI | GACGC | 2 cut(s) | 61, 154 |
| Hin1I | GRCGYC | 1 cut(s) | 165 |
| Hin1II | CATG | 3 cut(s) | 236, 247, 404 |
| HinfI | GANTC | 1 cut(s) | 433 |
| HpaII | CCGG | 1 cut(s) | 341 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy166II | GTNNAC | 2 cut(s) | 63, 411 |
| Hpy188I | TCNGA | 2 cut(s) | 445, 453 |
| Hpy188III | TCNNGA | 2 cut(s) | 233, 283 |
| Hpy8I | GTNNAC | 2 cut(s) | 63, 411 |
| HpyAV | CCTTC | 1 cut(s) | 280 |
| HpyCH4V | TGCA | 1 cut(s) | 386 |
| HpyF3I | CTNAG | 3 cut(s) | 113, 251, 405 |
| Hsp92I | GRCGYC | 1 cut(s) | 165 |
| Hsp92II | CATG | 3 cut(s) | 236, 247, 404 |
| Kzo9I | GATC | 2 cut(s) | 235, 289 |
| LpnPI | CCDG | 9 cut(s) | 36, 63, 116, 143, 171, 207, 306, 354, 443 |
| MaeI | CTAG | 1 cut(s) | 146 |
| MalI | GATC | 2 cut(s) | 237, 291 |
| MboI | GATC | 2 cut(s) | 235, 289 |
| MboII | GAAGA | 1 cut(s) | 271 |
| MflI | RGATCY | 1 cut(s) | 289 |
| MhlI | GDGCHC | 1 cut(s) | 130 |
| MluCI | AATT | 2 cut(s) | 199, 416 |
| MnlI | CCTC | 4 cut(s) | 199, 240, 257, 258 |
| MseI | TTAA | 3 cut(s) | 225, 395, 420 |
| MslI | CAYNNNNRTG | 2 cut(s) | 96, 147 |
| MspI | CCGG | 1 cut(s) | 341 |
| MspR9I | CCNGG | 3 cut(s) | 51, 131, 341 |
| MvaI | CCWGG | 2 cut(s) | 51, 131 |
| NciI | CCSGG | 1 cut(s) | 341 |
| NdeII | GATC | 2 cut(s) | 235, 289 |
| NlaIII | CATG | 3 cut(s) | 236, 247, 404 |
| NlaIV | GGNNCC | 5 cut(s) | 128, 258, 291, 358, 380 |
| NspI | RCATGY | 1 cut(s) | 404 |
| NspV | TTCGAA | 1 cut(s) | 38 |
| PaeI | GCATGC | 1 cut(s) | 404 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PfeI | GAWTC | 1 cut(s) | 433 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 185, 266, 299 |
| Psp6I | CCWGG | 2 cut(s) | 49, 129 |
| PspGI | CCWGG | 2 cut(s) | 49, 129 |
| PspN4I | GGNNCC | 5 cut(s) | 128, 258, 291, 358, 380 |
| PspOMI | GGGCCC | 1 cut(s) | 126 |
| PspPI | GGNCC | 5 cut(s) | 126, 127, 257, 356, 379 |
| PsuI | RGATCY | 1 cut(s) | 289 |
| RsaI | GTAC | 1 cut(s) | 62 |
| RsaNI | GTAC | 1 cut(s) | 61 |
| RseI | CAYNNNNRTG | 2 cut(s) | 96, 147 |
| SaqAI | TTAA | 3 cut(s) | 225, 395, 420 |
| Sau3AI | GATC | 2 cut(s) | 235, 289 |
| Sau96I | GGNCC | 5 cut(s) | 126, 127, 257, 356, 379 |
| ScrFI | CCNGG | 3 cut(s) | 51, 131, 341 |
| SduI | GDGCHC | 1 cut(s) | 130 |
| SetI | ASST | 8 cut(s) | 52, 62, 70, 105, 147, 199, 210, 268 |
| SfuI | TTCGAA | 1 cut(s) | 38 |
| SinI | GGWCC | 2 cut(s) | 257, 356 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 96, 147 |
| SmlI | CTYRAG | 1 cut(s) | 16 |
| SmoI | CTYRAG | 1 cut(s) | 16 |
| SphI | GCATGC | 1 cut(s) | 404 |
| Sse9I | AATT | 2 cut(s) | 199, 416 |
| SspMI | CTAG | 1 cut(s) | 146 |
| StyD4I | CCNGG | 3 cut(s) | 49, 129, 339 |
| TaqI | TCGA | 2 cut(s) | 38, 204 |
| TasI | AATT | 2 cut(s) | 199, 416 |
| TfiI | GAWTC | 1 cut(s) | 433 |
| Tru1I | TTAA | 3 cut(s) | 225, 395, 420 |
| Tru9I | TTAA | 3 cut(s) | 225, 395, 420 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 185, 266, 299 |
| VpaK11BI | GGWCC | 2 cut(s) | 257, 356 |
| XapI | RAATTY | 1 cut(s) | 416 |
| XceI | RCATGY | 1 cut(s) | 404 |
| XspI | CTAG | 1 cut(s) | 146 |