Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018495

Physical Location & Seq

Genomic Coordinates Reverse (-)

52517474 .. 52519479

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTAGATTACTTTTTTACATCGTGTGCAAGTATGACCGATTTAAAACATGCGATGTCTATGAACAGATTTCTAGTAGTGTATGGTGGAAATGAGCATATTGATGAGCTTGAAACACTAAGCCAAAAAAGGGCCCTGGATACATTTCACCTAGATGGAAAGAAGTGGGGCATCAATCTTCAACCATTATCTGGTTCTCCAGCTAATTTCGAGGTTTATATAGCAGTTCTCAATCCTCATGATCGTATCATGAAGGATCTAGTTCTTGGAGTTGATTTAGAAACTGCCATCAACAATGTTGTTTTCTCGGCCTTACAGAGTGGTCCCCATAACCACACTATTGGGGGCCTTGCAGTTTGCTTAAAGCATGCTCAGTCCACAGAATTTAAGGCTTACCAGAATCAGGATATTCAAGAGCTACTTGCTGCATGGAAGCCTTATTTTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016740 GO:0016741 GO:0016742 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

150

Amino Acids

16.81

Weight (kDa)

5.53

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	28 - 85	3.9e-22	Serine hydroxymethyltransferase
SHMT	PF00464	92 - 137	2.1e-11	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018495)

Species	Orthologous Gene IDs
malus_domestica	MD09G1269200.v1.1
pyrus_communis	pycom17g26660
rosa_chinensis	RchiOBHm_Chr1g0360671 RchiOBHm_Chr7g0223221
rosa_multiflora	Rmu_co8421897.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301080 Rroxscaffold_7G00212560
rosa_samantha	Rh3BG358300 Rh6AG220400
rosa_wichuraiana	Rw6G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	383
AfiI	CCNNNNNNNGG	3 cut(s)	130, 191, 403
AgsI	TTSAA	3 cut(s)	113, 182, 413
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	109, 203, 418
AluI	AGCT	3 cut(s)	109, 203, 418
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	132, 309, 346
ApaI	GGGCCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	383
AspS9I	GGNCC	4 cut(s)	132, 133, 323, 346
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	149, 296
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	133
BfaI	CTAG	3 cut(s)	74, 152, 260
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	4 cut(s)	132, 133, 323, 346
BmiI	GGNNCC	3 cut(s)	134, 325, 347
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	180, 436
BpmI	CTGGAG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 191, 403
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	130, 191, 403
BseMII	CTCAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	412
BshFI	GGCC	3 cut(s)	134, 311, 348
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	130, 191, 403
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	134, 311, 348
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	241, 256
BspANI	GGCC	3 cut(s)	134, 311, 348
BspCNI	CTCAG	1 cut(s)	385
BspHI	TCATGA	2 cut(s)	238, 249
BspLI	GGNNCC	3 cut(s)	134, 325, 347
BspPI	GGATC	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	241, 256
Bst2UI	CCWGG	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	119, 372, 450
BstKTI	GATC	2 cut(s)	244, 259
BstMBI	GATC	2 cut(s)	241, 256
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	53, 371
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	134, 311, 348
BtgZI	GCGATG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	2 cut(s)	238, 249
Cfr13I	GGNCC	4 cut(s)	132, 133, 323, 346
CviAII	CATG	5 cut(s)	50, 239, 250, 368, 429
CviJI	RGCY	9 cut(s)	109, 123, 134, 203, 311, 348, 392, 418, 436
CviKI_1	RGCY	9 cut(s)	109, 123, 134, 203, 311, 348, 392, 418, 436
DdeI	CTNAG	3 cut(s)	119, 372, 450
DpnI	GATC	2 cut(s)	243, 258
DpnII	GATC	2 cut(s)	241, 256
DraI	TTTAAA	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	132, 133, 346
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	5 cut(s)	53, 242, 253, 371, 432
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	5 cut(s)	49, 238, 249, 367, 428
Fnu4HI	GCNGC	1 cut(s)	426
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	3 cut(s)	74, 152, 260
GluI	GCNGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	134, 311, 348
Hin1II	CATG	5 cut(s)	53, 242, 253, 371, 432
HinfI	GANTC	1 cut(s)	400
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188III	TCNNGA	4 cut(s)	239, 250, 404, 413
Hpy8I	GTNNAC	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	29, 353, 428
HpyF3I	CTNAG	3 cut(s)	119, 372, 450
Hsp92II	CATG	5 cut(s)	53, 242, 253, 371, 432
Kzo9I	GATC	2 cut(s)	241, 256
LpnPI	CCDG	6 cut(s)	122, 149, 177, 213, 389, 410
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	2 cut(s)	180, 436
MaeI	CTAG	3 cut(s)	74, 152, 260
MalI	GATC	2 cut(s)	243, 258
MboI	GATC	2 cut(s)	241, 256
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	2 cut(s)	205, 383
MnlI	CCTC	2 cut(s)	205, 246
MseI	TTAA	3 cut(s)	44, 362, 387
MslI	CAYNNNNRTG	2 cut(s)	102, 153
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	241, 256
NlaIII	CATG	5 cut(s)	53, 242, 253, 371, 432
NlaIV	GGNNCC	3 cut(s)	134, 325, 347
NmeAIII	GCCGAG	1 cut(s)	287
NspI	RCATGY	2 cut(s)	53, 371
PaeI	GCATGC	1 cut(s)	371
PagI	TCATGA	2 cut(s)	238, 249
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	134, 325, 347
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	4 cut(s)	132, 133, 323, 346
PsuI	RGATCY	1 cut(s)	256
RseI	CAYNNNNRTG	2 cut(s)	102, 153
SaqAI	TTAA	3 cut(s)	44, 362, 387
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	241, 256
Sau96I	GGNCC	4 cut(s)	132, 133, 323, 346
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	5 cut(s)	111, 153, 205, 216, 420
SfaNI	GCATC	2 cut(s)	180, 436
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	2 cut(s)	102, 153
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	2 cut(s)	205, 383
SspMI	CTAG	3 cut(s)	74, 152, 260
StyD4I	CCNGG	1 cut(s)	135
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	205, 383
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	3 cut(s)	44, 362, 387
Tru9I	TTAA	3 cut(s)	44, 362, 387
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	77, 266
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	2 cut(s)	53, 371
XspI	CTAG	3 cut(s)	74, 152, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.