Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421897.1

Orthogroup ID

OG0018495

Physical Location & Seq

Genomic Coordinates Reverse (-)

60 .. 1334

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgcaggcttgcagtggagctgcagttatgggttctgttcagcagcccacatggcttagaggagcagcttttccaaatagacgacttagcattagtggatttccacatcaagtgaaccttaattttgcaaagactgctagatcttattctaacatccaaggaagcttggttgctgggaggccatcctctccggcttcagtgcatgtgcctgaatttggagatattggaagcagttttgtagataatggcttaagtgaggctgaccctgaggtgcgtgctattattgacaaggagaaagagcggcagttcaaaagccttgagcttattgcctcagagaatttcacttcacgggcagtaatggaggcagttggctcatgtctcacaaacaagtattcggaaggattacctgggaaaaggtactatggtggaaatgagcacattgatgagcttgaaacactatgccaaaaaagggccctggatgcatttcacctagatggaaagaagtggggcgtcaatgttcaaccattatctggttctccagctaatttcgaggtttatacagcagttctcaatcctcatgatcgtatcatgggtttggacttgccacacgggggacatttgtctcatgggttcatgactcctaaaagacgggtatcaggaacatctatttattttgagtccatgccttaccgacttgatgaatccacaggttctgcattacatttcccattagactatgttgtctttcagattaactacggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016740 GO:0016741 GO:0016742 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

254

Amino Acids

27.84

Weight (kDa)

6.5

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018495)

Species	Orthologous Gene IDs
malus_domestica	MD09G1269200.v1.1
pyrus_communis	pycom17g26660
rosa_chinensis	RchiOBHm_Chr1g0360671 RchiOBHm_Chr7g0223221
rosa_multiflora	Rmu_co8421897.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301080 Rroxscaffold_7G00212560
rosa_samantha	Rh3BG358300 Rh6AG220400
rosa_wichuraiana	Rw6G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	740
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccBSI	CCGCTC	1 cut(s)	301
AciI	CCGC	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	212, 337
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	4 cut(s)	215, 469, 530, 611
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	310, 452, 521
AjnI	CCWGG	2 cut(s)	406, 474
AluBI	AGCT	6 cut(s)	20, 68, 165, 322, 448, 542
AluI	AGCT	6 cut(s)	20, 68, 165, 322, 448, 542
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	2 cut(s)	383, 627
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	2 cut(s)	179, 471
ApaI	GGGCCC	1 cut(s)	475
ApeKI	GCWGC	3 cut(s)	20, 43, 65
ApoI	RAATTY	2 cut(s)	212, 337
AspS9I	GGNCC	2 cut(s)	471, 472
AsuHPI	GGTGA	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	475
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BanII	GRGCYC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	7, 55, 77
BccI	CCATC	2 cut(s)	190, 488
BciT130I	CCWGG	2 cut(s)	408, 476
BcoDI	GTCTC	2 cut(s)	383, 627
BfaI	CTAG	2 cut(s)	138, 491
BfmI	CTRYAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	4 cut(s)	21, 44, 66, 302
BlsI	GCNGC	4 cut(s)	22, 45, 67, 303
Bme1390I	CCNGG	2 cut(s)	408, 476
BmgT120I	GGNCC	2 cut(s)	471, 472
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	2 cut(s)	408, 476
BmsI	GCATC	1 cut(s)	469
BoxI	GACNNNNGTC	1 cut(s)	619
BpmI	CTGGAG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	157, 407, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 469, 530, 611
Bse21I	CCTNAGG	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	408, 476
BseDI	CCNNGG	3 cut(s)	157, 407, 474
BseGI	GGATG	3 cut(s)	153, 182, 484
BseLI	CCNNNNNNNGG	4 cut(s)	215, 469, 530, 611
BseMII	CTCAG	2 cut(s)	258, 345
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	7, 55, 77
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	181, 473
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	4 cut(s)	215, 469, 530, 611
BsmAI	GTCTC	2 cut(s)	383, 627
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	181, 473
Bsp120I	GGGCCC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	438, 475
Bsp143I	GATC	2 cut(s)	140, 580
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	181, 473
BspCNI	CTCAG	2 cut(s)	259, 344
BspHI	TCATGA	2 cut(s)	577, 633
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	157, 407, 474
BssMI	GATC	2 cut(s)	140, 580
BssNI	GRCGYC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	408, 476
BstACI	GRCGYC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	6, 10, 276
BstDEI	CTNAG	4 cut(s)	56, 86, 267, 331
BstF5I	GGATG	3 cut(s)	153, 182, 484
BstKTI	GATC	2 cut(s)	143, 583
BstMAI	GTCTC	2 cut(s)	383, 627
BstMBI	GATC	2 cut(s)	140, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 134, 479
BstNI	CCWGG	2 cut(s)	408, 476
BstNSI	RCATGY	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	406, 474
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	7, 55, 77
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	181, 473
BtsCI	GGATG	3 cut(s)	153, 182, 484
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 204
Cac8I	GCNNGC	3 cut(s)	6, 10, 276
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	2 cut(s)	577, 633
Cfr13I	GGNCC	2 cut(s)	471, 472
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	8 cut(s)	51, 203, 375, 578, 589, 626, 634, 682
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	56, 86, 267, 331
DpnI	GATC	2 cut(s)	142, 582
DpnII	GATC	2 cut(s)	140, 580
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	267
EcoO109I	RGGNCCY	2 cut(s)	471, 472
EcoRII	CCWGG	2 cut(s)	406, 474
EcoT14I	CCWWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	8 cut(s)	54, 206, 378, 581, 592, 629, 637, 685
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	8 cut(s)	50, 202, 374, 577, 588, 625, 633, 681
Fnu4HI	GCNGC	4 cut(s)	21, 44, 66, 302
FokI	GGATG	3 cut(s)	140, 169, 491
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	4 cut(s)	21, 44, 66, 302
FspBI	CTAG	2 cut(s)	138, 491
GluI	GCNGC	4 cut(s)	21, 44, 66, 302
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	181, 473
HapII	CCGG	1 cut(s)	191
HgaI	GACGC	1 cut(s)	499
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	8 cut(s)	54, 206, 378, 581, 592, 629, 637, 685
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	3 cut(s)	637, 677, 701
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	334, 397, 750
Hpy188III	TCNNGA	3 cut(s)	578, 634, 657
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	392
HpyCH4V	TGCA	7 cut(s)	4, 12, 23, 128, 202, 482, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 134, 479
HpyF3I	CTNAG	4 cut(s)	56, 86, 267, 331
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	8 cut(s)	54, 206, 378, 581, 592, 629, 637, 685
Kzo9I	GATC	2 cut(s)	140, 580
LmnI	GCTCC	2 cut(s)	17, 62
Lsp1109I	GCAGC	3 cut(s)	7, 55, 77
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	138, 491
MalI	GATC	2 cut(s)	142, 582
MbiI	CCGCTC	1 cut(s)	301
MboI	GATC	2 cut(s)	140, 580
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	438, 475
MluCI	AATT	4 cut(s)	121, 212, 337, 544
MlyI	GAGTC	2 cut(s)	631, 686
MnlI	CCTC	9 cut(s)	53, 171, 196, 250, 262, 340, 355, 544, 585
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	3 cut(s)	120, 251, 753
MslI	CAYNNNNRTG	2 cut(s)	441, 492
MspCI	CTTAAG	1 cut(s)	250
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	408, 476
MvaI	CCWGG	2 cut(s)	408, 476
MwoI	GCNNNNNNNGC	3 cut(s)	52, 134, 479
NdeII	GATC	2 cut(s)	140, 580
NlaIII	CATG	8 cut(s)	54, 206, 378, 581, 592, 629, 637, 685
NlaIV	GGNNCC	1 cut(s)	473
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	206
PagI	TCATGA	2 cut(s)	577, 633
PfeI	GAWTC	1 cut(s)	701
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	22, 45, 67, 303
PleI	GAGTC	2 cut(s)	631, 685
PpsI	GAGTC	2 cut(s)	631, 685
PshAI	GACNNNNGTC	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	406, 474
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	406, 474
PspN4I	GGNNCC	1 cut(s)	473
PspOMI	GGGCCC	1 cut(s)	471
PspPI	GGNCC	2 cut(s)	471, 472
PstI	CTGCAG	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	2 cut(s)	441, 492
SaqAI	TTAA	3 cut(s)	120, 251, 753
SatI	GCNGC	4 cut(s)	21, 44, 66, 302
Sau3AI	GATC	2 cut(s)	140, 580
Sau96I	GGNCC	2 cut(s)	471, 472
SchI	GAGTC	2 cut(s)	631, 686
ScrFI	CCNGG	2 cut(s)	408, 476
SduI	GDGCHC	2 cut(s)	438, 475
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	441, 492
SmlI	CTYRAG	2 cut(s)	250, 317
SmoI	CTYRAG	2 cut(s)	250, 317
Sse9I	AATT	4 cut(s)	121, 212, 337, 544
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	138, 491
StyD4I	CCNGG	2 cut(s)	406, 474
StyI	CCWWGG	1 cut(s)	157
TaqI	TCGA	1 cut(s)	549
TasI	AATT	4 cut(s)	121, 212, 337, 544
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	3 cut(s)	120, 251, 753
Tru9I	TTAA	3 cut(s)	120, 251, 753
TscAI	CASTG	2 cut(s)	19, 204
TseI	GCWGC	3 cut(s)	20, 43, 65
TspDTI	ATGAA	2 cut(s)	622, 714
TspRI	CASTG	2 cut(s)	19, 204
Van91I	CCANNNNNTGG	1 cut(s)	530
Vha464I	CTTAAG	1 cut(s)	250
XapI	RAATTY	2 cut(s)	212, 337
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	2 cut(s)	138, 491
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.