Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018495

Physical Location & Seq

Genomic Coordinates Forward (+)

38520768 .. 38521714

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGCAGTTGGCTCATGTCTCACAAACAAGTATTCGGAAGGATTACCTGGGAAAAGGTACTATGGTGGAAATGAGCACATTGATGAGCTTGAAACACTAAGCCAAAAAAGGGCCCTGGATACATTTCACCTAGATGGAAAGAAGTGGGGCGTCAATGTTCAACCATTATCTGGTTCTCCAGCTAATTTCGAGGTTTATATAGCAGTTCTTAATCCTCATGATCGTATCATGCCTCTAAGGGGTCCAAGAGGTGGAATGATATTCTTCAAGAAGGATCCAGTTCTTGGAGTTGATTTAGAAACTGCCATCAACAATACTGTTTTCCCGGCCTTACAGCAACATTTATATTTTCAATGTAGACATAAAAGGCTTGACTTCTTGATACAGAGTGGTCCCCATAACCACACTATTGGGGGCCTTGCAGTTTGCTTAAAGCATGCTCAGTCCCCAGAATTTAAGGCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016740 GO:0016741 GO:0016742 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

156

Amino Acids

17.47

Weight (kDa)

8.43

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHMT	PF00464	1 - 80	8.8e-38	Serine hydroxymethyltransferase
SHMT	PF00464	80 - 156	1.9e-09	Serine hydroxymethyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018495)

Species	Orthologous Gene IDs
malus_domestica	MD09G1269200.v1.1
pyrus_communis	pycom17g26660
rosa_chinensis	RchiOBHm_Chr1g0360671 RchiOBHm_Chr7g0223221
rosa_multiflora	Rmu_co8421897.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301080 Rroxscaffold_7G00212560
rosa_samantha	Rh3BG358300 Rh6AG220400
rosa_wichuraiana	Rw6G019320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	173, 254, 287
AccI	GTMKAC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	272, 285
AcsI	RAATTY	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	5 cut(s)	112, 173, 242, 254, 287
AgsI	TTSAA	4 cut(s)	95, 164, 271, 356
AjnI	CCWGG	2 cut(s)	49, 117
AluBI	AGCT	2 cut(s)	91, 185
AluI	AGCT	2 cut(s)	91, 185
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	272, 285
AoxI	GGCC	3 cut(s)	114, 330, 418
ApaI	GGGCCC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	5 cut(s)	114, 115, 245, 395, 418
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	245, 395
BaeGI	GKGCMC	1 cut(s)	118
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	2 cut(s)	131, 317
BciT130I	CCWGG	2 cut(s)	51, 119
BciVI	GTATCC	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	134, 469
BfuI	GTATCC	1 cut(s)	115
Bme1390I	CCNGG	3 cut(s)	51, 119, 329
Bme18I	GGWCC	2 cut(s)	245, 395
BmgT120I	GGNCC	5 cut(s)	114, 115, 245, 395, 418
BmiI	GGNNCC	5 cut(s)	116, 246, 279, 397, 419
BmrFI	CCNGG	3 cut(s)	51, 119, 329
BpmI	CTGGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	50, 117
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 173, 242, 254, 287
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	51, 119
BseDI	CCNNGG	2 cut(s)	50, 117
BseLI	CCNNNNNNNGG	5 cut(s)	112, 173, 242, 254, 287
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	118
BshFI	GGCC	3 cut(s)	116, 332, 420
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	329
BslFI	GGGAC	2 cut(s)	381, 433
BslI	CCNNNNNNNGG	5 cut(s)	112, 173, 242, 254, 287
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	2 cut(s)	381, 433
BsnI	GGCC	3 cut(s)	116, 332, 420
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	81, 118
Bsp143I	GATC	2 cut(s)	223, 277
BspANI	GGCC	3 cut(s)	116, 332, 420
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	5 cut(s)	116, 246, 279, 397, 419
BspPI	GGATC	2 cut(s)	272, 285
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	50, 117
BssMI	GATC	2 cut(s)	223, 277
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	51, 119
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	3 cut(s)	101, 239, 444
BstKTI	GATC	2 cut(s)	226, 280
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	223, 277
BstNI	CCWGG	2 cut(s)	51, 119
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	49, 117, 327
BstSLI	GKGCMC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	3 cut(s)	116, 332, 420
Cac8I	GCNNGC	1 cut(s)	441
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	5 cut(s)	114, 115, 245, 395, 418
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	4 cut(s)	18, 221, 232, 440
CviJI	RGCY	9 cut(s)	15, 91, 105, 116, 185, 332, 373, 420, 464
CviKI_1	RGCY	9 cut(s)	15, 91, 105, 116, 185, 332, 373, 420, 464
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	101, 239, 444
DpnI	GATC	2 cut(s)	225, 279
DpnII	GATC	2 cut(s)	223, 277
Eco24I	GRGCYC	1 cut(s)	118
Eco47I	GGWCC	2 cut(s)	245, 395
EcoO109I	RGGNCCY	3 cut(s)	114, 115, 418
EcoRII	CCWGG	2 cut(s)	49, 117
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	4 cut(s)	21, 224, 235, 443
FaqI	GGGAC	2 cut(s)	381, 433
FatI	CATG	4 cut(s)	17, 220, 231, 439
FblI	GTMKAC	1 cut(s)	361
FriOI	GRGCYC	1 cut(s)	118
FspBI	CTAG	2 cut(s)	134, 469
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	116, 332, 420
HapII	CCGG	1 cut(s)	329
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	4 cut(s)	21, 224, 235, 443
HpaII	CCGG	1 cut(s)	329
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	221, 271, 382
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	35, 268
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	101, 239, 444
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	21, 224, 235, 443
Kzo9I	GATC	2 cut(s)	223, 277
LpnPI	CCDG	9 cut(s)	36, 63, 104, 131, 159, 195, 294, 342, 465
MaeI	CTAG	2 cut(s)	134, 469
MalI	GATC	2 cut(s)	225, 279
MboI	GATC	2 cut(s)	223, 277
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	81, 118
MluCI	AATT	2 cut(s)	187, 455
MnlI	CCTC	4 cut(s)	187, 228, 245, 246
MseI	TTAA	3 cut(s)	213, 434, 459
MslI	CAYNNNNRTG	2 cut(s)	84, 135
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	3 cut(s)	51, 119, 329
MvaI	CCWGG	2 cut(s)	51, 119
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	223, 277
NlaIII	CATG	4 cut(s)	21, 224, 235, 443
NlaIV	GGNNCC	5 cut(s)	116, 246, 279, 397, 419
NspI	RCATGY	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	443
PagI	TCATGA	1 cut(s)	220
PflMI	CCANNNNNTGG	3 cut(s)	173, 254, 287
Psp6I	CCWGG	2 cut(s)	49, 117
PspGI	CCWGG	2 cut(s)	49, 117
PspN4I	GGNNCC	5 cut(s)	116, 246, 279, 397, 419
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	5 cut(s)	114, 115, 245, 395, 418
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	2 cut(s)	84, 135
SaqAI	TTAA	3 cut(s)	213, 434, 459
Sau3AI	GATC	2 cut(s)	223, 277
Sau96I	GGNCC	5 cut(s)	114, 115, 245, 395, 418
ScrFI	CCNGG	3 cut(s)	51, 119, 329
SduI	GDGCHC	2 cut(s)	81, 118
SetI	ASST	7 cut(s)	52, 62, 93, 135, 187, 198, 256
SinI	GGWCC	2 cut(s)	245, 395
SmiMI	CAYNNNNRTG	2 cut(s)	84, 135
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	2 cut(s)	187, 455
SspMI	CTAG	2 cut(s)	134, 469
StyD4I	CCNGG	3 cut(s)	49, 117, 327
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	187, 455
Tru1I	TTAA	3 cut(s)	213, 434, 459
Tru9I	TTAA	3 cut(s)	213, 434, 459
Van91I	CCANNNNNTGG	3 cut(s)	173, 254, 287
VpaK11BI	GGWCC	2 cut(s)	245, 395
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	361
XspI	CTAG	2 cut(s)	134, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.