Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016492

Physical Location & Seq

Genomic Coordinates Reverse (-)

25903783 .. 25905018

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCTATTACGTCATCAACTATTCGAAGCTGCGCATTTGGGAGTTTGTGGAGTACGAGAAAATGATATACTTGGACGGGGACATCGAGGTGTACGACAATATAGACCACCTCTTTGACTTGCCAGATGGACATTTCTACGCAGTCATGGACTGTTTCTGCGAGAAAACCTGGAGCCACACGCCGCAATACCAAATCGGGTACTGCCAGCAGTGCCCGGAGAAGGTCCAGTGGCCCACATCGGAGCTGGGCCCGCCTCCGTCGCTGTACTTCAACGCGGGCATGTTCGTGTTCGAGCCCGGCCTCGAGACCTACCATGACCTGTTGAGGACTCTCAGAGTGACCCCTCCGACCCCGTTTGCAGAACAGGACTTCTTAAACATGTATTTCCGGAAAATATACAAGCCAATTCCTTTGGTATACAATTTGGTCCTCGCCATGCTTTGGCGTCACCCGGAGAATGTGGAGCTAGACAAAGTCAAAGTCGTCCATTATTGTGCAGCAGGATCGAAGCCGTGGAGGTATACAGGGAAGGAGGAGAACATGCAGAGGGAGGACATCAAGATGCTGGTGAAGAAATGGTGGGACATATACAACGACGAGTGGTTGGATTACAAGAAGATGGCGGGAGGAGCAGGGGCAGGAGGAGTTGTGGCTCCAGAAGCAGCTTCAGGTGCTGAAGGGGTGAACATGCAGCCGTTCATTGACGCTCTGTCGGGAGCTGCGGTCCAGTACGTGACAGCCCCGTCAGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0046677 GO:0047216 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

253

Amino Acids

29.09

Weight (kDa)

4.99

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	3 - 176	2.1e-34	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47180
fragaria_vesca	FvH4_1g26560
malus_domestica	MD09G1288100.v1.1 MD17G1280400.v1.1
prunus_persica	Prupe.3G005100_v2.0.a1
pyrus_communis	pycom09g19550 pycom17g27830
rosa_chinensis	RchiOBHm_Chr3g0486641
rosa_laevigata	RLG00000023070
rosa_multiflora	Rmu_sc0000261.1_g000006
rosa_rugosa	Rorug03G0226200
rosa_samantha	Rh3AG275700 Rh3DG306800
rosa_wichuraiana	Rw3G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	745
Acc16I	TGCGCA	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	2 cut(s)	420, 524
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	6 cut(s)	185, 254, 278, 626, 725, 752
AclWI	GGATC	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	654, 699
AcyI	GRCGYC	1 cut(s)	448
AfaI	GTAC	5 cut(s)	56, 95, 203, 269, 734
AfiI	CCNNNNNNNGG	3 cut(s)	223, 444, 751
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	274
AhdI	GACNNNNNGTC	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	5 cut(s)	31, 247, 469, 668, 722
AluI	AGCT	5 cut(s)	31, 247, 469, 668, 722
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	5 cut(s)	3, 233, 250, 301, 753
ApaI	GGGCCC	1 cut(s)	254
ApeKI	GCWGC	5 cut(s)	31, 500, 665, 694, 722
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 468, 500
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	6 cut(s)	226, 234, 250, 251, 430, 727
AsuC2I	CCSGG	3 cut(s)	218, 300, 455
AsuHPI	GGTGA	3 cut(s)	443, 583, 697
AsuII	TTCGAA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	3 cut(s)	226, 430, 727
BaeGI	GKGCMC	2 cut(s)	218, 254
BanII	GRGCYC	2 cut(s)	254, 300
BbvI	GCAGC	5 cut(s)	18, 512, 677, 706, 709
BccI	CCATC	2 cut(s)	122, 616
BceAI	ACGGC	2 cut(s)	499, 682
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	3 cut(s)	218, 300, 455
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	470, 757
BisI	GCNGC	7 cut(s)	32, 185, 501, 666, 695, 723, 753
BlsI	GCNGC	7 cut(s)	33, 186, 502, 667, 696, 724, 754
Bme1390I	CCNGG	4 cut(s)	172, 218, 300, 455
Bme18I	GGWCC	3 cut(s)	226, 430, 727
BmeRI	GACNNNNNGTC	1 cut(s)	712
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	6 cut(s)	226, 234, 250, 251, 430, 727
BmiI	GGNNCC	3 cut(s)	176, 252, 657
BmrFI	CCNGG	4 cut(s)	172, 218, 300, 455
BmsI	GCATC	1 cut(s)	555
BpmI	CTGGAG	2 cut(s)	193, 642
Bpu14I	TTCGAA	1 cut(s)	26
BpuMI	CCSGG	3 cut(s)	218, 300, 455
BsaAI	YACGTR	1 cut(s)	736
BsaHI	GRCGYC	1 cut(s)	448
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	515
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	4 cut(s)	636, 666, 711, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 444, 751
Bse1I	ACTGG	2 cut(s)	229, 730
BseAI	TCCGGA	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	223, 444, 751
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	2 cut(s)	229, 730
BseRI	GAGGAG	3 cut(s)	551, 645, 660
BseSI	GKGCMC	2 cut(s)	218, 254
BseXI	GCAGC	5 cut(s)	18, 512, 677, 706, 709
BseYI	CCCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	5 cut(s)	5, 235, 252, 303, 755
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	218, 300, 391, 455
BslFI	GGGAC	2 cut(s)	95, 599
BslI	CCNNNNNNNGG	3 cut(s)	223, 444, 751
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	95, 599
BsnI	GGCC	5 cut(s)	5, 235, 252, 303, 755
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	26
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	3 cut(s)	218, 254, 300
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	506
BspACI	CCGC	6 cut(s)	185, 254, 278, 626, 725, 752
BspANI	GGCC	5 cut(s)	5, 235, 252, 303, 755
BspCNI	CTCAG	1 cut(s)	348
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	176, 252, 657
BspPI	GGATC	1 cut(s)	514
BspT104I	TTCGAA	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	229, 730
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	1 cut(s)	506
BssNAI	GTATAC	2 cut(s)	421, 525
BssNI	GRCGYC	1 cut(s)	448
Bst1107I	GTATAC	2 cut(s)	421, 525
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	736
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	209, 254, 280
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	515
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	7 cut(s)	213, 253, 262, 632, 662, 674, 749
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	4 cut(s)	286, 385, 547, 694
BstSCI	CCNGG	4 cut(s)	170, 216, 298, 453
BstSLI	GKGCMC	2 cut(s)	218, 254
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	18, 512, 677, 706, 709
BstZ17I	GTATAC	2 cut(s)	421, 525
BsuRI	GGCC	5 cut(s)	5, 235, 252, 303, 755
BtgI	CCRYGG	1 cut(s)	515
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	2 cut(s)	218, 236
Cac8I	GCNNGC	3 cut(s)	209, 254, 280
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	6 cut(s)	226, 234, 250, 251, 430, 727
CseI	GACGC	2 cut(s)	437, 716
Csp6I	GTAC	5 cut(s)	55, 94, 202, 268, 733
CviAII	CATG	7 cut(s)	148, 283, 317, 382, 439, 544, 691
CviQI	GTAC	5 cut(s)	55, 94, 202, 268, 733
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
DrdI	GACNNNNNNGTC	1 cut(s)	745
DriI	GACNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	745
Eam1105I	GACNNNNNGTC	1 cut(s)	712
Eco24I	GRGCYC	2 cut(s)	254, 300
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	3 cut(s)	226, 430, 727
Eco57I	CTGAAG	2 cut(s)	654, 699
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	254, 300
FaeI	CATG	7 cut(s)	151, 286, 320, 385, 442, 547, 694
FaqI	GGGAC	2 cut(s)	95, 599
FatI	CATG	7 cut(s)	147, 282, 316, 381, 438, 543, 690
FauI	CCCGC	3 cut(s)	261, 271, 619
FblI	GTMKAC	2 cut(s)	420, 524
Fnu4HI	GCNGC	7 cut(s)	32, 185, 501, 666, 695, 723, 753
FriOI	GRGCYC	2 cut(s)	254, 300
Fsp4HI	GCNGC	7 cut(s)	32, 185, 501, 666, 695, 723, 753
FspBI	CTAG	2 cut(s)	470, 757
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	7 cut(s)	32, 185, 501, 666, 695, 723, 753
GsaI	CCCAGC	1 cut(s)	251
GsuI	CTGGAG	2 cut(s)	193, 642
HaeIII	GGCC	5 cut(s)	5, 235, 252, 303, 755
HapII	CCGG	4 cut(s)	218, 300, 391, 455
HgaI	GACGC	2 cut(s)	437, 716
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	448
Hin1II	CATG	7 cut(s)	151, 286, 320, 385, 442, 547, 694
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	4 cut(s)	218, 300, 391, 455
HphI	GGTGA	3 cut(s)	443, 583, 697
Hpy166II	GTNNAC	4 cut(s)	94, 421, 525, 688
Hpy188I	TCNGA	3 cut(s)	244, 338, 351
Hpy188III	TCNNGA	5 cut(s)	307, 391, 562, 659, 717
Hpy8I	GTNNAC	4 cut(s)	94, 421, 525, 688
Hpy99I	CGWCG	2 cut(s)	265, 602
HpyAV	CCTTC	3 cut(s)	217, 526, 674
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	2 cut(s)	12, 735
HpyCH4V	TGCA	4 cut(s)	362, 500, 547, 694
HpyF10VI	GCNNNNNNNGC	7 cut(s)	213, 253, 262, 632, 662, 674, 749
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	12, 735
Hsp92I	GRCGYC	1 cut(s)	448
Hsp92II	CATG	7 cut(s)	151, 286, 320, 385, 442, 547, 694
HspAI	GCGC	1 cut(s)	34
Kpn2I	TCCGGA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	6 cut(s)	174, 244, 466, 632, 661, 719
Lsp1109I	GCAGC	5 cut(s)	18, 512, 677, 706, 709
LweI	GCATC	1 cut(s)	555
MaeI	CTAG	2 cut(s)	470, 757
MaeII	ACGT	2 cut(s)	12, 735
MaeIII	GTNAC	3 cut(s)	340, 449, 736
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	2 cut(s)	586, 631
MhlI	GDGCHC	3 cut(s)	218, 254, 300
MluCI	AATT	2 cut(s)	408, 424
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	374, 588
MroI	TCCGGA	1 cut(s)	390
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	4 cut(s)	89, 287, 495, 563
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	4 cut(s)	218, 300, 391, 455
MspR9I	CCNGG	4 cut(s)	172, 218, 300, 455
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	7 cut(s)	213, 253, 262, 632, 662, 674, 749
NciI	CCSGG	3 cut(s)	218, 300, 455
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	7 cut(s)	151, 286, 320, 385, 442, 547, 694
NlaIV	GGNNCC	3 cut(s)	176, 252, 657
NmuCI	GTSAC	3 cut(s)	340, 449, 736
NsbI	TGCGCA	1 cut(s)	35
NspI	RCATGY	4 cut(s)	286, 385, 547, 694
NspV	TTCGAA	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	305
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 93
PflFI	GACNNNGTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	7 cut(s)	33, 186, 502, 667, 696, 724, 754
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	736
PscI	ACATGT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	176, 252, 657
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	6 cut(s)	226, 234, 250, 251, 430, 727
PstNI	CAGNNNCTG	1 cut(s)	677
PsyI	GACNNNGTC	1 cut(s)	476
RsaI	GTAC	5 cut(s)	56, 95, 203, 269, 734
RsaNI	GTAC	5 cut(s)	55, 94, 202, 268, 733
RseI	CAYNNNNRTG	4 cut(s)	89, 287, 495, 563
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	7 cut(s)	32, 185, 501, 666, 695, 723, 753
Sau3AI	GATC	1 cut(s)	506
Sau96I	GGNCC	6 cut(s)	226, 234, 250, 251, 430, 727
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	4 cut(s)	172, 218, 300, 455
SduI	GDGCHC	3 cut(s)	218, 254, 300
SfaNI	GCATC	1 cut(s)	555
Sfr274I	CTCGAG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	3 cut(s)	226, 430, 727
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	4 cut(s)	89, 287, 495, 563
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	408, 424
SsiI	CCGC	6 cut(s)	185, 254, 278, 626, 725, 752
SspMI	CTAG	2 cut(s)	470, 757
StyD4I	CCNGG	4 cut(s)	170, 216, 298, 453
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	2 cut(s)	15, 738
TaqI	TCGA	5 cut(s)	26, 87, 294, 306, 509
TasI	AATT	2 cut(s)	408, 424
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	2 cut(s)	187, 755
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	2 cut(s)	218, 236
TseFI	GTSAC	3 cut(s)	340, 449, 736
TseI	GCWGC	5 cut(s)	31, 500, 665, 694, 722
Tsp45I	GTSAC	3 cut(s)	340, 449, 736
TspDTI	ATGAA	1 cut(s)	691
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	218, 236
Tth111I	GACNNNGTC	1 cut(s)	476
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	3 cut(s)	226, 430, 727
XceI	RCATGY	4 cut(s)	286, 385, 547, 694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	305
XmiI	GTMKAC	2 cut(s)	420, 524
XspI	CTAG	2 cut(s)	470, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.