pycom290g00060

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_290
Physical Location & Seq
Forward (+)
71143 .. 74542
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom290g00060.8

Sequence Viewer

Length: 1635 bp
ATGGCAGAAGGAGGAACAACCTTGGAGTACACTCCGACTTGGGTGGTGGCTTTGGTGTCTAGTGTCATAGTCATCCTATCACTTTTCCTCGAGAGAACCCTTCACTACACCGGCAAGTATCTCAAGAAACACAACCAGAAACCTCTCTTTCAGGCCTTGCAGAAGATCAAAGAAGAGTTGATGCTTTTGGGGTTTATATCACTGCTGCTGACGGTGTTCCAAGGACGTATAGCCAAAATCTGTATAACCGAAAAACAGGCCGGTCAATGGCTGCCTTGCAAGAAAGAGACCACCAGTACTAGTACTAGTGCCCATTTCCAGACCGTGTTCTTTCCCTGGAGCAGTGCTGCCCGTCGCCTTCTTGCTGAAGACTCTGCTTCCACCACGTCCGGCTCCTGTTCAGAGGGGAAGGTCCCTCTGTTATCCACCACGGCATTGCATCATCTTCACATCTTCATTTTTGTGCTGGCTGTGGTGCATGTGACTTTCTGTGTTCTAACCATTCTTTTTGGAGGAGCAAAGATACGTGAATGGAAACATTGGGAGGATTCTATCACCAAAAAGGAGTACAACCCACAAGAAGTTTTGACAATGAAGTTCACCCACGTCCACGATCATGATTTTATTAGGGGCCGCTTTCGTGGTATTGGAAAGAATTCAGCTATTCTTGGTTGGTTGCATGCATTTTTCAAGCAATTTTATGGCTCTGTGACCAAAACAGATTATATGACAATGCGACTAGGCTTCATCAGTACCCATTGCAAGGCAAATCCAAATTTTAATTTCCACAAGTACATGATTCGTGCCCTTGAAGCAGACTTTAAAAGAGTCGTTGGGATAAGTTGGTATCTTTGGATCTTTGTGGTCATCTTCTTGTTGCTGAATGTGTCGGGTTGGCATGCCTATTTCTGGATAGCGTTCATTCCATTCATCCTTTTACTTGCGGTTGGGACTAAGTTGGAGCATGTAATAAGTCAACTGGCCCATGAGGTTGCTGAGAAACACATTGCAATCGAAGGTGACTTGGTTGTTCAGCCTTCAGATGATCATTTTTGGTTTCACCGGCCCAGACTCGTTCTCTTACTCGTTCATATCATCCTGTTCCAAAATTCGTTTGAACTCGCATTTTTCTTCTGGATATTGGTTCAGTATAAATTTCATTCCTGCATGATGGGGGAACTTGGTTATGTTATCCCAAGGCTTGTAATTGGAGTATTCGTTCAGTTCGTCTGCAGTTACAGTACCTTGCCACTGTACGCAATTGTCACACAGATGGGAAGTTCGTTCAAGAAGGCTATATTTGAAGAACATATACAAGAGGGGCTTGTTGGGTGGGCTCGGTCGGCCAAAAAGAATAAGGCGTTGAGAAACGCAGCTAATGCAAATGGTTCTGGTTCTGGTTCTGGTGCTGGTGCTGGTTCTACTCAAGTAGGTGTAGGTGTAGGTCTCAAAGAGAAAGAGAAAGAGAAAGAGGCTTCAGTGACACTTGAATTGGCTCAAAAACTAAAAGTTGGAAACAAGGAGGGATCTTCTCTCCAACGTCATGACACTACTTCTACAGGTGCGGCTGCGGCTGTGACTGCCGTAGAAATTGAGCCCCAACAGCCACTCATACAGCAAAGTAAACTTCAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

545

Amino Acids

61.16

Weight (kDa)

9.29

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014625)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 634, 944, 1565, 1571
AclWI GGATC 2 cut(s) 863, 1534
AcoI YGGCCR 1 cut(s) 1344
AcsI RAATTY 4 cut(s) 655, 775, 1108, 1154
AcuI CTGAAG 3 cut(s) 387, 1023, 1461
AfaI GTAC 8 cut(s) 29, 298, 304, 569, 754, 794, 1243, 1256
AfiI CCNNNNNNNGG 3 cut(s) 267, 763, 909
AgsI TTSAA 7 cut(s) 691, 812, 1118, 1288, 1304, 1490, 1631
AhlI ACTAGT 2 cut(s) 299, 305
AjiI CACGTC 2 cut(s) 387, 607
AjnI CCWGG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 1203, 1235
AluBI AGCT 2 cut(s) 662, 1376
AluI AGCT 2 cut(s) 662, 1376
Alw26I GTCTC 2 cut(s) 281, 1451
AlwI GGATC 2 cut(s) 863, 1534
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 6 cut(s) 153, 258, 631, 981, 1064, 1344
ApeKI GCWGC 5 cut(s) 205, 271, 347, 1373, 1568
ApoI RAATTY 4 cut(s) 655, 775, 1108, 1154
Asp700I GAANNNNTTC 1 cut(s) 655
AspS9I GGNCC 4 cut(s) 412, 631, 982, 1065
AsuHPI GGTGA 4 cut(s) 547, 592, 1031, 1052
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 412
BaeGI GKGCMC 2 cut(s) 313, 808
BanII GRGCYC 2 cut(s) 1339, 1599
BarI GAAGNNNNNNTAC 2 cut(s) 1296, 1328
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 5 cut(s) 192, 258, 334, 1385, 1555
BccI CCATC 2 cut(s) 1165, 1267
BceAI ACGGC 2 cut(s) 447, 1568
BciT130I CCWGG 1 cut(s) 337
BclI TGATCA 1 cut(s) 1045
BcoDI GTCTC 2 cut(s) 281, 1451
BcuI ACTAGT 2 cut(s) 299, 305
BfaI CTAG 4 cut(s) 60, 300, 306, 740
BfmI CTRYAG 2 cut(s) 1231, 1557
BisI GCNGC 8 cut(s) 206, 272, 348, 634, 1374, 1566, 1569, 1572
BlsI GCNGC 8 cut(s) 207, 273, 349, 635, 1375, 1567, 1570, 1573
BmcAI AGTACT 2 cut(s) 298, 304
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 412
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 2 cut(s) 387, 607
BmgT120I GGNCC 4 cut(s) 412, 631, 982, 1065
BmiI GGNNCC 3 cut(s) 394, 414, 632
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 171, 448
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 2 cut(s) 107, 1410
BsaAI YACGTR 1 cut(s) 527
BsaI GGTCTC 2 cut(s) 281, 1451
BsaJI CCNNGG 5 cut(s) 21, 220, 335, 429, 1196
BsaXI ACNNNNNCTCC 2 cut(s) 1203, 1233
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 763, 909
Bse118I RCCGGY 3 cut(s) 110, 260, 1062
Bse1I ACTGG 2 cut(s) 294, 984
Bse3DI GCAATG 3 cut(s) 434, 757, 1005
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 5 cut(s) 21, 220, 335, 429, 1196
BseGI GGATG 3 cut(s) 72, 930, 1095
BseLI CCNNNNNNNGG 3 cut(s) 267, 763, 909
BseMI GCAATG 3 cut(s) 434, 757, 1005
BseMII CTCAG 1 cut(s) 987
BseNI ACTGG 2 cut(s) 294, 984
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 2 cut(s) 313, 808
BseXI GCAGC 5 cut(s) 192, 258, 334, 1385, 1555
Bsh1285I CGRYCG 1 cut(s) 1343
BshFI GGCC 6 cut(s) 155, 260, 633, 983, 1066, 1346
BsiEI CGRYCG 1 cut(s) 1343
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 4 cut(s) 111, 261, 390, 1063
BslFI GGGAC 2 cut(s) 398, 964
BslI CCNNNNNNNGG 3 cut(s) 267, 763, 909
BsmAI GTCTC 2 cut(s) 281, 1451
BsmFI GGGAC 2 cut(s) 398, 964
BsnI GGCC 6 cut(s) 155, 260, 633, 983, 1066, 1346
Bso31I GGTCTC 2 cut(s) 281, 1451
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 4 cut(s) 313, 808, 1339, 1599
Bsp143I GATC 5 cut(s) 165, 613, 855, 1045, 1526
BspACI CCGC 4 cut(s) 634, 944, 1565, 1571
BspANI GGCC 6 cut(s) 155, 260, 633, 983, 1066, 1346
BspCNI CTCAG 1 cut(s) 988
BspHI TCATGA 2 cut(s) 616, 1543
BspLI GGNNCC 3 cut(s) 394, 414, 632
BspMAI CTGCAG 1 cut(s) 1235
BspPI GGATC 2 cut(s) 863, 1534
BspTNI GGTCTC 2 cut(s) 281, 1451
BsrDI GCAATG 3 cut(s) 434, 757, 1005
BsrFI RCCGGY 3 cut(s) 110, 260, 1062
BsrI ACTGG 2 cut(s) 294, 984
BssAI RCCGGY 3 cut(s) 110, 260, 1062
BssECI CCNNGG 5 cut(s) 21, 220, 335, 429, 1196
BssMI GATC 5 cut(s) 165, 613, 855, 1045, 1526
BssT1I CCWWGG 3 cut(s) 21, 220, 1196
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 4 cut(s) 214, 325, 1241, 1254
Bst6I CTCTTC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 1379
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 468, 681, 900
BstDEI CTNAG 2 cut(s) 954, 996
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 72, 930, 1095
BstKTI GATC 5 cut(s) 168, 616, 858, 1048, 1529
BstMAI GTCTC 2 cut(s) 281, 1451
BstMBI GATC 5 cut(s) 165, 613, 855, 1045, 1526
BstMCI CGRYCG 1 cut(s) 1343
BstMWI GCNNNNNNNGC 6 cut(s) 812, 1343, 1379, 1571, 1580, 1603
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 4 cut(s) 482, 683, 902, 968
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 2 cut(s) 1231, 1557
BstSLI GKGCMC 2 cut(s) 313, 808
BstV1I GCAGC 5 cut(s) 192, 258, 334, 1385, 1555
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 2 cut(s) 855, 1526
BstYI RGATCY 2 cut(s) 855, 1526
BsuRI GGCC 6 cut(s) 155, 260, 633, 983, 1066, 1346
BtgI CCRYGG 1 cut(s) 429
BtrI CACGTC 2 cut(s) 387, 607
BtsCI GGATG 3 cut(s) 72, 930, 1095
BtsI GCAGTG 2 cut(s) 200, 349
BtsIMutI CAGTG 4 cut(s) 200, 349, 1250, 1485
Cac8I GCNNGC 3 cut(s) 468, 681, 900
CciI TCATGA 2 cut(s) 616, 1543
Cfr10I RCCGGY 3 cut(s) 110, 260, 1062
Cfr13I GGNCC 4 cut(s) 412, 631, 982, 1065
Csp6I GTAC 8 cut(s) 28, 297, 303, 568, 753, 793, 1242, 1255
CviAII CATG 9 cut(s) 479, 617, 680, 796, 899, 965, 986, 1168, 1544
CviQI GTAC 8 cut(s) 28, 297, 303, 568, 753, 793, 1242, 1255
DdeI CTNAG 2 cut(s) 954, 996
DpnI GATC 5 cut(s) 167, 615, 857, 1047, 1528
DpnII GATC 5 cut(s) 165, 613, 855, 1045, 1526
DraI TTTAAA 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 1344
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 3 cut(s) 21, 220, 1196
Eco147I AGGCCT 1 cut(s) 155
Eco24I GRGCYC 2 cut(s) 1339, 1599
Eco31I GGTCTC 2 cut(s) 281, 1451
Eco47I GGWCC 1 cut(s) 412
Eco57I CTGAAG 3 cut(s) 387, 1023, 1461
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 3 cut(s) 21, 220, 1196
EcoT22I ATGCAT 1 cut(s) 685
EcoT38I GRGCYC 2 cut(s) 1339, 1599
ErhI CCWWGG 3 cut(s) 21, 220, 1196
FaeI CATG 9 cut(s) 482, 620, 683, 799, 902, 968, 989, 1171, 1547
FalI AAGNNNNNCTT 2 cut(s) 1308, 1340
FaqI GGGAC 2 cut(s) 398, 964
FatI CATG 9 cut(s) 478, 616, 679, 795, 898, 964, 985, 1167, 1543
FbaI TGATCA 1 cut(s) 1045
Fnu4HI GCNGC 8 cut(s) 206, 272, 348, 634, 1374, 1566, 1569, 1572
FokI GGATG 3 cut(s) 59, 917, 1082
FriOI GRGCYC 2 cut(s) 1339, 1599
Fsp4HI GCNGC 8 cut(s) 206, 272, 348, 634, 1374, 1566, 1569, 1572
FspBI CTAG 4 cut(s) 60, 300, 306, 740
GluI GCNGC 8 cut(s) 206, 272, 348, 634, 1374, 1566, 1569, 1572
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 6 cut(s) 155, 260, 633, 983, 1066, 1346
HapII CCGG 4 cut(s) 111, 261, 390, 1063
Hin1II CATG 9 cut(s) 482, 620, 683, 799, 902, 968, 989, 1171, 1547
HincII GTYRAC 1 cut(s) 977
HindII GTYRAC 1 cut(s) 977
HinfI GANTC 5 cut(s) 371, 548, 799, 828, 1071
HpaII CCGG 4 cut(s) 111, 261, 390, 1063
HphI GGTGA 4 cut(s) 547, 592, 1031, 1052
Hpy166II GTNNAC 5 cut(s) 30, 600, 610, 977, 1625
Hpy188I TCNGA 3 cut(s) 36, 403, 1042
Hpy188III TCNNGA 8 cut(s) 91, 124, 319, 617, 910, 1135, 1288, 1544
Hpy8I GTNNAC 5 cut(s) 30, 600, 610, 977, 1625
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 6 cut(s) 110, 368, 403, 1010, 1047, 1285
HpyCH4III ACNGT 4 cut(s) 214, 325, 1241, 1254
HpyCH4IV ACGT 5 cut(s) 226, 386, 526, 606, 1540
HpyF10VI GCNNNNNNNGC 6 cut(s) 812, 1343, 1379, 1571, 1580, 1603
HpyF3I CTNAG 2 cut(s) 954, 996
HpySE526I ACGT 5 cut(s) 226, 386, 526, 606, 1540
Hsp92II CATG 9 cut(s) 482, 620, 683, 799, 902, 968, 989, 1171, 1547
Ksp22I TGATCA 1 cut(s) 1045
Kzo9I GATC 5 cut(s) 165, 613, 855, 1045, 1526
LmnI GCTCC 4 cut(s) 339, 398, 515, 961
Lsp1109I GCAGC 5 cut(s) 192, 258, 334, 1385, 1555
LweI GCATC 2 cut(s) 171, 448
MaeI CTAG 4 cut(s) 60, 300, 306, 740
MaeII ACGT 5 cut(s) 226, 386, 526, 606, 1540
MaeIII GTNAC 7 cut(s) 481, 709, 1019, 1235, 1264, 1480, 1576
MalI GATC 5 cut(s) 167, 615, 857, 1047, 1528
MboI GATC 5 cut(s) 165, 613, 855, 1045, 1526
MboII GAAGA 9 cut(s) 175, 185, 380, 437, 445, 862, 1123, 1316, 1521
MfeI CAATTG 1 cut(s) 1260
MflI RGATCY 2 cut(s) 855, 1526
MhlI GDGCHC 4 cut(s) 313, 808, 1339, 1599
MlyI GAGTC 3 cut(s) 365, 837, 1065
MmeI TCCRAC 4 cut(s) 59, 939, 1492, 1561
Mph1103I ATGCAT 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 2 cut(s) 780, 822
MslI CAYNNNNRTG 3 cut(s) 461, 615, 1271
MspI CCGG 4 cut(s) 111, 261, 390, 1063
MspR9I CCNGG 1 cut(s) 337
MunI CAATTG 1 cut(s) 1260
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 6 cut(s) 812, 1343, 1379, 1571, 1580, 1603
NdeII GATC 5 cut(s) 165, 613, 855, 1045, 1526
NlaIII CATG 9 cut(s) 482, 620, 683, 799, 902, 968, 989, 1171, 1547
NlaIV GGNNCC 3 cut(s) 394, 414, 632
NmuCI GTSAC 6 cut(s) 481, 709, 1019, 1264, 1480, 1576
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 4 cut(s) 482, 683, 902, 968
PaeI GCATGC 2 cut(s) 683, 902
PaeR7I CTCGAG 1 cut(s) 89
PagI TCATGA 2 cut(s) 616, 1543
PceI AGGCCT 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 1224
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 2 cut(s) 548, 799
PkrI GCNGC 8 cut(s) 207, 273, 349, 635, 1375, 1567, 1570, 1573
PleI GAGTC 3 cut(s) 365, 836, 1065
PpsI GAGTC 3 cut(s) 365, 836, 1065
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 3 cut(s) 394, 414, 632
PspPI GGNCC 4 cut(s) 412, 631, 982, 1065
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 1 cut(s) 1235
PsuI RGATCY 2 cut(s) 855, 1526
RsaI GTAC 8 cut(s) 29, 298, 304, 569, 754, 794, 1243, 1256
RsaNI GTAC 8 cut(s) 28, 297, 303, 568, 753, 793, 1242, 1255
RseI CAYNNNNRTG 3 cut(s) 461, 615, 1271
SaqAI TTAA 2 cut(s) 780, 822
SatI GCNGC 8 cut(s) 206, 272, 348, 634, 1374, 1566, 1569, 1572
Sau3AI GATC 5 cut(s) 165, 613, 855, 1045, 1526
Sau96I GGNCC 4 cut(s) 412, 631, 982, 1065
ScaI AGTACT 2 cut(s) 298, 304
SchI GAGTC 3 cut(s) 365, 837, 1065
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 4 cut(s) 313, 808, 1339, 1599
SfaNI GCATC 2 cut(s) 171, 448
SfcI CTRYAG 2 cut(s) 1231, 1557
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 412
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 3 cut(s) 461, 615, 1271
SmlI CTYRAG 3 cut(s) 89, 122, 1425
SmoI CTYRAG 3 cut(s) 89, 122, 1425
SpeI ACTAGT 2 cut(s) 299, 305
SphI GCATGC 2 cut(s) 683, 902
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 4 cut(s) 634, 944, 1565, 1571
SspMI CTAG 4 cut(s) 60, 300, 306, 740
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 3 cut(s) 21, 220, 1196
TaaI ACNGT 4 cut(s) 214, 325, 1241, 1254
TaiI ACGT 5 cut(s) 229, 389, 529, 609, 1543
TaqI TCGA 2 cut(s) 90, 1014
TaqII GACCGA 1 cut(s) 1329
TatI WGTACW 5 cut(s) 27, 296, 302, 567, 792
TauI GCSGC 3 cut(s) 636, 1568, 1574
TfiI GAWTC 2 cut(s) 548, 799
Tru1I TTAA 2 cut(s) 780, 822
Tru9I TTAA 2 cut(s) 780, 822
TscAI CASTG 4 cut(s) 207, 349, 1257, 1485
TseFI GTSAC 6 cut(s) 481, 709, 1019, 1264, 1480, 1576
TseI GCWGC 5 cut(s) 205, 271, 347, 1373, 1568
Tsp45I GTSAC 6 cut(s) 481, 709, 1019, 1264, 1480, 1576
TspDTI ATGAA 7 cut(s) 445, 608, 736, 910, 919, 1079, 1148
TspRI CASTG 4 cut(s) 207, 349, 1257, 1485
VpaK11BI GGWCC 1 cut(s) 412
XapI RAATTY 4 cut(s) 655, 775, 1108, 1154
XceI RCATGY 4 cut(s) 482, 683, 902, 968
XhoI CTCGAG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 4 cut(s) 60, 300, 306, 740
ZrmI AGTACT 2 cut(s) 298, 304
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.