RLG00000015606

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014625
Physical Location & Seq
Forward (+)
122576 .. 127923
5348 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015606

Sequence Viewer

Length: 1620 bp
ATGGCCGGAGGAACAACGTTGGAGTACACGCCGACATGGGTGGTGGCTTTTGTGTGTTCTGTTATAGTCTTCATATCTTTAGTAGTCGAGCGATTACTTCACTACACTGGCAAGTATCTCAAGAGAAAGAACCAGAAACCTCTCTTCGAGGCCTTGCAGAAGATCAAAGAAGAGCTGATGCTTTTGGGGTTTATATCACTCCTGCTGACGGTGTTACAAGGACCTATAGAAAAGATCTGCATATCGGAGAAACTGGCCAGTCATTGGCTGCCTTGCAAAGAAGAGTCGAAGTCAACGTCAACGACTGCCCATTTCCAGACCAGCAGCTTCTTCAGTAGTAATTATTATTCTCGGCAGCTGCTGGTTTTTCCAGCCGGGACTGCCCGTCGCCTTCTTGCAGATGACGCTGAGACCTCTGAATCTGGTTCCACCGGCTCATGTCCAGAGGGGAAGGTCTCATTGCTATCCACGACTGCATTGCACCATCTGCATATCTTCATCTTTGTTCTAGCTGTGGTGCATGTGACTTTCTGTGTTCTAACCATTATTTTTGGAGGAATTAAGATACGTCAATGGAAACAATGGGAAGATTCTATAGTAAGAAAAGAGTACAATCCAGAAGAAGTTTTGACACAGAAGTTCACCGCCGTCCAAGATCATGATTTTATCAGAGGTCGTTTTCTGGGTATCGGAAAGAATCTAGCTTTTCTGGGTTGGTTGATTGCATATTTCAAACAATTTTATGGGTCTGTGACCAAAACAGACTATATGACAATGCGACTAGGCTTCATCAAGACACATTGCAAGGGAAACCCAAATTTTAATTTCCACAAGTACATGGTACGTGCCCTTGAAGCAGATTTCAAGAAAGTCGTTGGAATAAGTTGGTACCTTTGGATCTTTGTGGTGATCTTCTTGTTGCTGAATGTCGCTGGTTGGCATGCCTATTTCTGGATAGCATTCGTTCCTTTCTTTCTTTTACTTGCTGTTGGCACCAAGTTGGAGCATGTTATAATCCAATTAGCCCATGATGTTGCCGAGAAGCACATTGCAATAGAAGGAGACTTGGTGGTTCAACCTTCAGACGATCACTTTTGGTTCCACAGGCCTCGATTGGTTCTCTTACTGATTCATATCATCTTGTTCCAAAATTCTTTTGAACTAGCATTTTTCTTCTGGATATGGGTTCAATATTCCTTTAATTCCTGCATGATGGGGAAAATTGGTTACATTATCCCAAGACTTATAATCGGAGCATTTGTCCAGTTCGTCTGCAGCTACAGTACGTTACCACTCTACGCAATTGTCACACAGATGGGAACAACTTTTAAGAAGGCAATATTCGACGAACACATACAAGAGGGCCTTGTTGGGTGGGCTAAATCGGCAAAAAAGCACCAGGCGGCGTTAAGAAAGGCGGCTACTAATGGCAGTAGTAGTAATGGTTCTAGCCAAGTCAGTCATAGCAGCAAATACAAATTGCAGAGAGAAGAGGCAACTTCTGTGTCCAAGACATCATCGGCGACACTTGAACTGGCTCAAGTTGGAAATATGGAGTCTTCCGTGCATGTGGGAGAAATTCAGCCTCATCAACTGCCGCCAGCCAATGATCATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

540

Amino Acids

61.13

Weight (kDa)

9.02

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 5 - 490 9.4e-193 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00060 FvH4_1g00060 FvH4_1g00060 FvH4_3g16430
malus_domestica MD02G1001300.v1.1
prunus_persica Prupe.7G271400_v2.0.a1 Prupe.7G271400_v2.0.a1
pyrus_communis pycom290g00060
rosa_chinensis RchiOBHm_Chr2g0084281
rosa_laevigata RLG00000015606
rosa_multiflora Rmu_sc0003129.1_g000012
rosa_rugosa Rorug01G0452400
rosa_samantha Rh2AG000800 Rh2BG000700 Rh2CG000600 Rh2DG000800
rosa_wichuraiana Rw2G000060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1013, 1247
Acc65I GGTACC 1 cut(s) 888
AccB1I GGYRCC 2 cut(s) 888, 992
AccB7I CCANNNNNTGG 1 cut(s) 264
AciI CCGC 4 cut(s) 645, 1403, 1418, 1598
AclI AACGTT 1 cut(s) 17
AclWI GGATC 1 cut(s) 905
AcoI YGGCCR 2 cut(s) 3, 255
AcsI RAATTY 3 cut(s) 817, 1150, 1578
AcuI CTGAAG 2 cut(s) 316, 1065
AfaI GTAC 6 cut(s) 26, 611, 836, 843, 890, 1285
AfiI CCNNNNNNNGG 3 cut(s) 208, 264, 951
AgsI TTSAA 7 cut(s) 733, 854, 865, 1076, 1160, 1190, 1532
AhdI GACNNNNNGTC 1 cut(s) 384
AjnI CCWGG 1 cut(s) 1398
AluBI AGCT 6 cut(s) 175, 327, 358, 512, 704, 1278
AluI AGCT 6 cut(s) 175, 327, 358, 512, 704, 1278
Alw26I GTCTC 3 cut(s) 404, 460, 1056
AlwI GGATC 1 cut(s) 905
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 5 cut(s) 3, 150, 255, 1106, 1363
ApeKI GCWGC 6 cut(s) 268, 324, 355, 358, 1275, 1467
ApoI RAATTY 3 cut(s) 817, 1150, 1578
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
Asp718I GGTACC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 221, 1363
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 634, 919
AvaII GGWCC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 2 cut(s) 888, 992
BbsI GAAGAC 2 cut(s) 61, 1551
BbvI GCAGC 6 cut(s) 255, 336, 345, 367, 1287, 1479
BccI CCATC 3 cut(s) 492, 1207, 1309
BceAI ACGGC 1 cut(s) 632
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 1400
BclI TGATCA 1 cut(s) 1609
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 3 cut(s) 404, 460, 1056
BfaI CTAG 5 cut(s) 509, 701, 782, 1163, 1449
BfmI CTRYAG 4 cut(s) 225, 594, 1273, 1279
BglII AGATCT 1 cut(s) 234
BisI GCNGC 9 cut(s) 269, 325, 356, 359, 1276, 1404, 1419, 1468, 1598
BlsI GCNGC 9 cut(s) 270, 326, 357, 360, 1277, 1405, 1420, 1469, 1599
Bme1390I CCNGG 2 cut(s) 376, 1400
Bme18I GGWCC 1 cut(s) 221
BmeRI GACNNNNNGTC 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 221, 1363
BmiI GGNNCC 4 cut(s) 427, 890, 994, 1100
BmrFI CCNGG 2 cut(s) 376, 1400
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 61, 1551
BpuEI CTTGAG 2 cut(s) 104, 1524
BpuMI CCSGG 1 cut(s) 376
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1133
BsaI GGTCTC 2 cut(s) 404, 460
BsaXI ACNNNNNCTCC 4 cut(s) 1053, 1083, 1245, 1275
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 264, 951
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 5 cut(s) 112, 258, 258, 1264, 1539
Bse3DI GCAATG 4 cut(s) 458, 476, 799, 1047
Bse8I GATNNNNATC 1 cut(s) 1133
BseBI CCWGG 1 cut(s) 1400
BseJI GATNNNNATC 1 cut(s) 1133
BseLI CCNNNNNNNGG 3 cut(s) 208, 264, 951
BseMI GCAATG 4 cut(s) 458, 476, 799, 1047
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 5 cut(s) 112, 258, 258, 1264, 1539
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 6 cut(s) 255, 336, 345, 367, 1287, 1479
BshFI GGCC 5 cut(s) 5, 152, 257, 1108, 1365
BshNI GGYRCC 2 cut(s) 888, 992
BsiSI CCGG 3 cut(s) 6, 375, 432
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 208, 264, 951
BsmAI GTCTC 3 cut(s) 404, 460, 1056
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 959
BsnI GGCC 5 cut(s) 5, 152, 257, 1108, 1365
Bso31I GGTCTC 2 cut(s) 404, 460
Bsp1286I GDGCHC 1 cut(s) 850
Bsp143I GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
BspACI CCGC 4 cut(s) 645, 1403, 1418, 1598
BspANI GGCC 5 cut(s) 5, 152, 257, 1108, 1365
BspCNI CTCAG 1 cut(s) 400
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 4 cut(s) 427, 890, 994, 1100
BspMAI CTGCAG 1 cut(s) 1277
BspPI GGATC 1 cut(s) 905
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 2 cut(s) 888, 992
BspTNI GGTCTC 2 cut(s) 404, 460
BsrDI GCAATG 4 cut(s) 458, 476, 799, 1047
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 5 cut(s) 112, 258, 258, 1264, 1539
BssAI RCCGGY 1 cut(s) 431
BssMI GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
Bst2UI CCWGG 1 cut(s) 1400
Bst4CI ACNGT 2 cut(s) 211, 1283
Bst6I CTCTTC 4 cut(s) 149, 165, 276, 1485
BstAPI GCANNNNNTGC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 2 cut(s) 942, 1602
BstDEI CTNAG 1 cut(s) 408
BstKTI GATC 7 cut(s) 165, 237, 658, 900, 912, 1090, 1612
BstMAI GTCTC 3 cut(s) 404, 460, 1056
BstMBI GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
BstMWI GCNNNNNNNGC 5 cut(s) 380, 404, 487, 854, 1385
BstNI CCWGG 1 cut(s) 1400
BstNSI RCATGY 4 cut(s) 524, 944, 1010, 1571
BstSCI CCNGG 2 cut(s) 374, 1398
BstSFI CTRYAG 4 cut(s) 225, 594, 1273, 1279
BstSLI GKGCMC 1 cut(s) 850
BstV1I GCAGC 6 cut(s) 255, 336, 345, 367, 1287, 1479
BstV2I GAAGAC 2 cut(s) 61, 1551
BstX2I RGATCY 2 cut(s) 234, 897
BstYI RGATCY 2 cut(s) 234, 897
BsuRI GGCC 5 cut(s) 5, 152, 257, 1108, 1365
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 942, 1602
CaiI CAGNNNCTG 1 cut(s) 361
CciI TCATGA 1 cut(s) 658
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 221, 1363
CseI GACGC 1 cut(s) 413
Csp6I GTAC 6 cut(s) 25, 610, 835, 842, 889, 1284
CviQI GTAC 6 cut(s) 25, 610, 835, 842, 889, 1284
DdeI CTNAG 1 cut(s) 408
DpnI GATC 7 cut(s) 164, 236, 657, 899, 911, 1089, 1611
DpnII GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
DriI GACNNNNNGTC 1 cut(s) 384
EaeI YGGCCR 2 cut(s) 3, 255
Eam1104I CTCTTC 4 cut(s) 149, 165, 276, 1485
Eam1105I GACNNNNNGTC 1 cut(s) 384
EarI CTCTTC 4 cut(s) 149, 165, 276, 1485
Eco147I AGGCCT 2 cut(s) 152, 1108
Eco31I GGTCTC 2 cut(s) 404, 460
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 2 cut(s) 316, 1065
EcoO109I RGGNCCY 2 cut(s) 221, 1363
EcoRII CCWGG 1 cut(s) 1398
FalI AAGNNNNNCTT 2 cut(s) 1350, 1382
FaqI GGGAC 1 cut(s) 391
FbaI TGATCA 1 cut(s) 1609
Fnu4HI GCNGC 9 cut(s) 269, 325, 356, 359, 1276, 1404, 1419, 1468, 1598
Fsp4HI GCNGC 9 cut(s) 269, 325, 356, 359, 1276, 1404, 1419, 1468, 1598
FspBI CTAG 5 cut(s) 509, 701, 782, 1163, 1449
GluI GCNGC 9 cut(s) 269, 325, 356, 359, 1276, 1404, 1419, 1468, 1598
HaeIII GGCC 5 cut(s) 5, 152, 257, 1108, 1365
HapII CCGG 3 cut(s) 6, 375, 432
HgaI GACGC 1 cut(s) 413
HincII GTYRAC 2 cut(s) 294, 300
HindII GTYRAC 2 cut(s) 294, 300
HinfI GANTC 6 cut(s) 284, 419, 590, 697, 1129, 1556
HpaII CCGG 3 cut(s) 6, 375, 432
HphI GGTGA 2 cut(s) 634, 919
Hpy166II GTNNAC 4 cut(s) 27, 294, 300, 642
Hpy188I TCNGA 6 cut(s) 247, 418, 671, 692, 1084, 1253
Hpy188III TCNNGA 9 cut(s) 121, 316, 443, 617, 659, 793, 865, 952, 1177
Hpy8I GTNNAC 4 cut(s) 27, 294, 300, 642
Hpy99I CGWCG 2 cut(s) 390, 1349
HpyAV CCTTC 5 cut(s) 401, 445, 1052, 1089, 1327
HpyCH4III ACNGT 2 cut(s) 211, 1283
HpyCH4IV ACGT 5 cut(s) 17, 296, 568, 844, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 404, 487, 854, 1385
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 5 cut(s) 17, 296, 568, 844, 1286
KpnI GGTACC 1 cut(s) 892
Ksp22I TGATCA 1 cut(s) 1609
Kzo9I GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 2 cut(s) 1003, 1253
Lsp1109I GCAGC 6 cut(s) 255, 336, 345, 367, 1287, 1479
LweI GCATC 1 cut(s) 168
MaeI CTAG 5 cut(s) 509, 701, 782, 1163, 1449
MaeII ACGT 5 cut(s) 17, 296, 568, 844, 1286
MaeIII GTNAC 6 cut(s) 213, 523, 751, 1226, 1287, 1306
MalI GATC 7 cut(s) 164, 236, 657, 899, 911, 1089, 1611
MboI GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
MfeI CAATTG 1 cut(s) 1302
MflI RGATCY 2 cut(s) 234, 897
MhlI GDGCHC 1 cut(s) 850
MlsI TGGCCA 1 cut(s) 257
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 2 cut(s) 293, 1565
MmeI TCCRAC 3 cut(s) 856, 981, 1525
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 5 cut(s) 561, 822, 1200, 1329, 1409
MslI CAYNNNNRTG 1 cut(s) 1313
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 3 cut(s) 6, 375, 432
MspR9I CCNGG 2 cut(s) 376, 1400
MunI CAATTG 1 cut(s) 1302
Mva1269I GAATGC 1 cut(s) 959
MvaI CCWGG 1 cut(s) 1400
MwoI GCNNNNNNNGC 5 cut(s) 380, 404, 487, 854, 1385
NciI CCSGG 1 cut(s) 376
NdeII GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
NlaIV GGNNCC 4 cut(s) 427, 890, 994, 1100
NmeAIII GCCGAG 2 cut(s) 331, 1063
NmuCI GTSAC 3 cut(s) 523, 751, 1306
NspI RCATGY 4 cut(s) 524, 944, 1010, 1571
PaeI GCATGC 1 cut(s) 944
PagI TCATGA 1 cut(s) 658
PceI AGGCCT 2 cut(s) 152, 1108
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 1 cut(s) 959
PfeI GAWTC 4 cut(s) 419, 590, 697, 1129
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 9 cut(s) 270, 326, 357, 360, 1277, 1405, 1420, 1469, 1599
PleI GAGTC 2 cut(s) 292, 1564
PpsI GAGTC 2 cut(s) 292, 1564
Ppu21I YACGTR 1 cut(s) 845
PpuMI RGGWCCY 1 cut(s) 221
PsiI TTATAA 2 cut(s) 1013, 1247
Psp1406I AACGTT 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 1398
PspGI CCWGG 1 cut(s) 1398
PspN4I GGNNCC 4 cut(s) 427, 890, 994, 1100
PspPI GGNCC 2 cut(s) 221, 1363
PspPPI RGGWCCY 1 cut(s) 221
PsrI GAACNNNNNNTAC 2 cut(s) 1429, 1461
PstI CTGCAG 1 cut(s) 1277
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 234, 897
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 6 cut(s) 26, 611, 836, 843, 890, 1285
RsaNI GTAC 6 cut(s) 25, 610, 835, 842, 889, 1284
RseI CAYNNNNRTG 1 cut(s) 1313
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 5 cut(s) 561, 822, 1200, 1329, 1409
SatI GCNGC 9 cut(s) 269, 325, 356, 359, 1276, 1404, 1419, 1468, 1598
Sau3AI GATC 7 cut(s) 162, 234, 655, 897, 909, 1087, 1609
Sau96I GGNCC 2 cut(s) 221, 1363
SchI GAGTC 2 cut(s) 293, 1565
ScrFI CCNGG 2 cut(s) 376, 1400
SduI GDGCHC 1 cut(s) 850
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 4 cut(s) 225, 594, 1273, 1279
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 1313
SmlI CTYRAG 2 cut(s) 119, 1539
SmoI CTYRAG 2 cut(s) 119, 1539
SphI GCATGC 1 cut(s) 944
SseBI AGGCCT 2 cut(s) 152, 1108
SsiI CCGC 4 cut(s) 645, 1403, 1418, 1598
SspI AATATT 2 cut(s) 1193, 1341
SspMI CTAG 5 cut(s) 509, 701, 782, 1163, 1449
StuI AGGCCT 2 cut(s) 152, 1108
StyD4I CCNGG 2 cut(s) 374, 1398
TaaI ACNGT 2 cut(s) 211, 1283
TaiI ACGT 5 cut(s) 20, 299, 571, 847, 1289
TaqI TCGA 5 cut(s) 87, 147, 287, 1111, 1344
TatI WGTACW 3 cut(s) 24, 609, 834
TauI GCSGC 3 cut(s) 1406, 1421, 1600
TfiI GAWTC 4 cut(s) 419, 590, 697, 1129
Tru1I TTAA 5 cut(s) 561, 822, 1200, 1329, 1409
Tru9I TTAA 5 cut(s) 561, 822, 1200, 1329, 1409
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 3 cut(s) 523, 751, 1306
TseI GCWGC 6 cut(s) 268, 324, 355, 358, 1275, 1467
Tsp45I GTSAC 3 cut(s) 523, 751, 1306
TspDTI ATGAA 4 cut(s) 61, 487, 778, 1121
TspGWI ACGGA 1 cut(s) 1552
TspRI CASTG 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 3 cut(s) 817, 1150, 1578
XceI RCATGY 4 cut(s) 524, 944, 1010, 1571
XspI CTAG 5 cut(s) 509, 701, 782, 1163, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.