Rorug01G0452400

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014625
Physical Location & Seq
Reverse (-)
54734658 .. 54735518
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0452400.1

Sequence Viewer

Length: 861 bp
ATGGGTGGAGCAGCAAGGTTTCGGGCGAGGGCGAAGAAGAGGGCGGAAAAAGAAGAGGAGAGTAGGAAAGCCTACGAGGCCCGGGAAAGGAAGAAACCCGACGAGGCTGAATCATTGCTGTATCTATGCACTTTCGAGATCTACCACCATAAAGGTATAGCTGGATACCGTGTCCAGGTCATCAGATTGAGCGACTTGTTCATTCCTTCCGATACTCTCATCACCATATTTGGCCCCAAATCTCAAGCCCCCAAATCCAACTCCACCGAGGTGCTACGACAAGTTGCTTATTTAGACGGCGAACACGTTCCCGGCCATATGGGTTTTGGTGTCTTGGGCTCTCGAATTTTTCTGGCCGGCGGCTGGTTTCTCAATCCGTGGATGAGACACAGACCTAAACCAACCTATGTTTTGGAGAATGATCGAAGTGTGGAACCCAACCCCAGGTTCATCAGCACCAGAAGTACTCCTAATCCTAAACCCCCCTATATGATTCCGGAATTGAAACCGGAAAAACCTCGTCCGTGGATGCGGGAGATCGACGGTAAGCTATATGCTCTCTCTGGCGATTACATGGGAGTTGCGGCTTTTGAGGTATTTGACCCCAAAACCAATCATGTGTGGGCTCCTCTCCCCATTCTTCCAATTGGGAATGATAGGCCTCCCTGGGAAGCGCTTTCTTCATCCTCCTGTGCAGTTGTAGGCACCAAGATCTTGGTCACACTTACGTTAGACTCTAGGGAGACAGTAGTGAAGATACTCTGCTTCGACGTGGCTCACCCTGAGAGATCATGGACTAGACTTGAACCACCCTGGTGGCAGTTTCATAGTTCTTCCCCGAATTTTACAACGAGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

286

Amino Acids

32.66

Weight (kDa)

9.36

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 164 - 268 8.3e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014625)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g00060 FvH4_1g00060 FvH4_1g00060 FvH4_3g16430
malus_domestica MD02G1001300.v1.1
prunus_persica Prupe.7G271400_v2.0.a1 Prupe.7G271400_v2.0.a1
pyrus_communis pycom290g00060
rosa_chinensis RchiOBHm_Chr2g0084281
rosa_laevigata RLG00000015606
rosa_multiflora Rmu_sc0003129.1_g000012
rosa_rugosa Rorug01G0452400
rosa_samantha Rh2AG000800 Rh2BG000700 Rh2CG000600 Rh2DG000800
rosa_wichuraiana Rw2G000060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 704
AccIII TCCGGA 1 cut(s) 496
AciI CCGC 4 cut(s) 44, 360, 532, 584
AcoI YGGCCR 2 cut(s) 313, 354
AcsI RAATTY 2 cut(s) 345, 841
AfaI GTAC 1 cut(s) 466
AfeI AGCGCT 1 cut(s) 675
AfiI CCNNNNNNNGG 4 cut(s) 87, 175, 363, 444
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 505, 806
AjiI CACGTC 1 cut(s) 772
AjnI CCWGG 4 cut(s) 174, 443, 665, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AleI CACNNNNGTG 2 cut(s) 269, 814
AluBI AGCT 2 cut(s) 161, 550
AluI AGCT 2 cut(s) 161, 550
Alw26I GTCTC 2 cut(s) 379, 737
Ama87I CYCGRG 1 cut(s) 81
Aor13HI TCCGGA 1 cut(s) 496
Aor51HI AGCGCT 1 cut(s) 675
AoxI GGCC 5 cut(s) 78, 232, 313, 354, 659
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 345, 841
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 2 cut(s) 79, 233
AsuC2I CCSGG 3 cut(s) 82, 83, 312
AsuHPI GGTGA 2 cut(s) 214, 770
AvaI CYCGRG 1 cut(s) 81
BanI GGYRCC 1 cut(s) 704
BanII GRGCYC 2 cut(s) 341, 628
BbvI GCAGC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 4 cut(s) 176, 445, 667, 814
BciVI GTATCC 1 cut(s) 158
BcnI CCSGG 3 cut(s) 82, 83, 312
BcoDI GTCTC 2 cut(s) 379, 737
BfaI CTAG 2 cut(s) 738, 798
BfoI RGCGCY 1 cut(s) 677
BfuI GTATCC 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 2 cut(s) 138, 711
BisI GCNGC 3 cut(s) 12, 361, 585
BlsI GCNGC 3 cut(s) 13, 362, 586
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 7 cut(s) 82, 83, 176, 312, 445, 667, 814
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 79, 233
BmiI GGNNCC 4 cut(s) 235, 435, 627, 706
BmrFI CCNGG 7 cut(s) 82, 83, 176, 312, 445, 667, 814
BmsI GCATC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 228
BpuMI CCSGG 3 cut(s) 82, 83, 312
BsaJI CCNNGG 8 cut(s) 81, 267, 377, 443, 524, 665, 666, 812
BsaWI WCCGGW 2 cut(s) 496, 508
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 175, 363, 444
Bse118I RCCGGY 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 496
BseBI CCWGG 4 cut(s) 176, 445, 667, 814
BseDI CCNNGG 8 cut(s) 81, 267, 377, 443, 524, 665, 666, 812
BseGI GGATG 3 cut(s) 387, 534, 683
BseLI CCNNNNNNNGG 4 cut(s) 87, 175, 363, 444
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 774
BseRI GAGGAG 2 cut(s) 71, 618
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 5 cut(s) 80, 234, 315, 356, 661
BshNI GGYRCC 1 cut(s) 704
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 5 cut(s) 82, 312, 357, 497, 509
BslI CCNNNNNNNGG 4 cut(s) 87, 175, 363, 444
BsmAI GTCTC 2 cut(s) 379, 737
BsnI GGCC 5 cut(s) 80, 234, 315, 356, 661
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 341, 628
Bsp13I TCCGGA 1 cut(s) 496
Bsp143I GATC 5 cut(s) 138, 421, 537, 711, 788
BspACI CCGC 4 cut(s) 44, 360, 532, 584
BspANI GGCC 5 cut(s) 80, 234, 315, 356, 661
BspCNI CTCAG 1 cut(s) 775
BspEI TCCGGA 1 cut(s) 496
BspLI GGNNCC 4 cut(s) 235, 435, 627, 706
BspT107I GGYRCC 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 8 cut(s) 81, 267, 377, 443, 524, 665, 666, 812
BssMI GATC 5 cut(s) 138, 421, 537, 711, 788
Bst2UI CCWGG 4 cut(s) 176, 445, 667, 814
Bst4CI ACNGT 3 cut(s) 170, 545, 748
Bst6I CTCTTC 2 cut(s) 32, 48
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 783
BstDSI CCRYGG 2 cut(s) 377, 524
BstF5I GGATG 3 cut(s) 387, 534, 683
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 5 cut(s) 141, 424, 540, 714, 791
BstMAI GTCTC 2 cut(s) 379, 737
BstMBI GATC 5 cut(s) 138, 421, 537, 711, 788
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 4 cut(s) 176, 445, 667, 814
BstSCI CCNGG 7 cut(s) 80, 81, 174, 310, 443, 665, 812
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 138, 711
BstXI CCANNNNNNTGG 2 cut(s) 715, 816
BstYI RGATCY 2 cut(s) 138, 711
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 5 cut(s) 80, 234, 315, 356, 661
BtgI CCRYGG 2 cut(s) 377, 524
BtrI CACGTC 1 cut(s) 772
BtsCI GGATG 3 cut(s) 387, 534, 683
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 79, 233
Cfr9I CCCGGG 1 cut(s) 81
Csp6I GTAC 1 cut(s) 465
CviAII CATG 3 cut(s) 574, 617, 792
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 1 cut(s) 783
DpnI GATC 5 cut(s) 140, 423, 539, 713, 790
DpnII GATC 5 cut(s) 138, 421, 537, 711, 788
EaeI YGGCCR 2 cut(s) 313, 354
Eam1104I CTCTTC 2 cut(s) 32, 48
EarI CTCTTC 2 cut(s) 32, 48
EciI GGCGGA 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 661
Eco24I GRGCYC 2 cut(s) 341, 628
Eco47III AGCGCT 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 4 cut(s) 174, 443, 665, 812
EcoT38I GRGCYC 2 cut(s) 341, 628
FaeI CATG 3 cut(s) 577, 620, 795
FatI CATG 3 cut(s) 573, 616, 791
FauI CCCGC 1 cut(s) 525
FauNDI CATATG 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 12, 361, 585
FokI GGATG 3 cut(s) 394, 541, 670
FriOI GRGCYC 2 cut(s) 341, 628
Fsp4HI GCNGC 3 cut(s) 12, 361, 585
FspBI CTAG 2 cut(s) 738, 798
GlaI GCGC 1 cut(s) 675
GluI GCNGC 3 cut(s) 12, 361, 585
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 5 cut(s) 80, 234, 315, 356, 661
HapII CCGG 5 cut(s) 82, 312, 357, 497, 509
HhaI GCGC 1 cut(s) 676
Hin1II CATG 3 cut(s) 577, 620, 795
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HinfI GANTC 3 cut(s) 110, 493, 734
HpaII CCGG 5 cut(s) 82, 312, 357, 497, 509
HphI GGTGA 2 cut(s) 214, 770
Hpy188I TCNGA 2 cut(s) 185, 211
Hpy188III TCNNGA 3 cut(s) 136, 342, 497
Hpy99I CGWCG 3 cut(s) 104, 545, 773
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 3 cut(s) 170, 545, 748
HpyCH4IV ACGT 3 cut(s) 306, 728, 771
HpyCH4V TGCA 2 cut(s) 129, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 783
HpySE526I ACGT 3 cut(s) 306, 728, 771
Hsp92II CATG 3 cut(s) 577, 620, 795
HspAI GCGC 1 cut(s) 674
Kpn2I TCCGGA 1 cut(s) 496
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 5 cut(s) 138, 421, 537, 711, 788
LmnI GCTCC 2 cut(s) 8, 631
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 519
MaeI CTAG 2 cut(s) 738, 798
MaeII ACGT 3 cut(s) 306, 728, 771
MaeIII GTNAC 1 cut(s) 718
MalI GATC 5 cut(s) 140, 423, 539, 713, 790
MboI GATC 5 cut(s) 138, 421, 537, 711, 788
MboII GAAGA 8 cut(s) 46, 49, 65, 103, 632, 672, 766, 825
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 2 cut(s) 138, 711
MhlI GDGCHC 2 cut(s) 341, 628
MluCI AATT 4 cut(s) 345, 500, 645, 841
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 1 cut(s) 282
MroI TCCGGA 1 cut(s) 496
MroNI GCCGGC 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 269, 814
MspI CCGG 5 cut(s) 82, 312, 357, 497, 509
MspR9I CCNGG 7 cut(s) 82, 83, 176, 312, 445, 667, 814
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 4 cut(s) 176, 445, 667, 814
MwoI GCNNNNNNNGC 1 cut(s) 77
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 3 cut(s) 82, 83, 312
NdeI CATATG 1 cut(s) 318
NdeII GATC 5 cut(s) 138, 421, 537, 711, 788
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 3 cut(s) 577, 620, 795
NlaIV GGNNCC 4 cut(s) 235, 435, 627, 706
NmuCI GTSAC 1 cut(s) 718
OliI CACNNNNGTG 2 cut(s) 269, 814
PasI CCCWGGG 1 cut(s) 666
PceI AGGCCT 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdiI GCCGGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 110, 493
PkrI GCNGC 3 cut(s) 13, 362, 586
PleI GAGTC 1 cut(s) 728
PpsI GAGTC 1 cut(s) 728
Psp6I CCWGG 4 cut(s) 174, 443, 665, 812
PspGI CCWGG 4 cut(s) 174, 443, 665, 812
PspN4I GGNNCC 4 cut(s) 235, 435, 627, 706
PspPI GGNCC 2 cut(s) 79, 233
PsuI RGATCY 2 cut(s) 138, 711
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
RseI CAYNNNNRTG 2 cut(s) 269, 814
SatI GCNGC 3 cut(s) 12, 361, 585
Sau3AI GATC 5 cut(s) 138, 421, 537, 711, 788
Sau96I GGNCC 2 cut(s) 79, 233
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 7 cut(s) 82, 83, 176, 312, 445, 667, 814
SduI GDGCHC 2 cut(s) 341, 628
SfaNI GCATC 1 cut(s) 519
SmaI CCCGGG 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 269, 814
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 4 cut(s) 345, 500, 645, 841
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 4 cut(s) 44, 360, 532, 584
SspMI CTAG 2 cut(s) 738, 798
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 7 cut(s) 80, 81, 174, 310, 443, 665, 812
TaaI ACNGT 3 cut(s) 170, 545, 748
TaiI ACGT 3 cut(s) 309, 731, 774
TaqI TCGA 5 cut(s) 135, 343, 424, 540, 768
TasI AATT 4 cut(s) 345, 500, 645, 841
TatI WGTACW 1 cut(s) 464
TauI GCSGC 2 cut(s) 363, 587
TfiI GAWTC 2 cut(s) 110, 493
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 4 cut(s) 190, 439, 672, 815
TspGWI ACGGA 2 cut(s) 366, 513
TspMI CCCGGG 1 cut(s) 81
XapI RAATTY 2 cut(s) 345, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmaI CCCGGG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 2 cut(s) 738, 798
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.