Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0014336

Physical Location & Seq

Genomic Coordinates Forward (+)

929552 .. 930211

Gene Structure 660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g00750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATGCAAGCCACTCTCCTCACTCCACCTCCACGCCCTACCCCCACCGCCGCTGCCGTCAAGTCCCTACTACCACCCCCTCATGGGCCCCGCCACCACGGACCCCCATTCTTTGTCAGAGCCTCTGTTTCTGAGGCCGCCCAATCGCCGCCCTCCATCTCCGTCGAATCACCCCCGCCCCCGTCTGCAAAGCAGCACCAAAAGCTCAACAGGTACAGCTCCCGCATCACGGAGCCCAAGTCCCAGGGTGGGTCCCGGGCCATTCTGCACGGCGTGGGCCTCTCCAAGGAGGATTTGAGCAAGCCCCAGATCGGCATATCGTCGGTCTGGTACGAAGGGAACGCCTGCAACATGCACCTGCTGGGCCTCTCGGAAGCCGTCAAGGAAGGGGTCCGAGAGGCCGGCATGGTGGGGTTCCGGTTCAACACGGTCGGGGTCAGTGATGTTATTTCCATGGGTACCAGAGGAATGTGCTACAGCTTGCAGTCTCGGGACTTGATTGCCGACAGCATCGAGACTGTTATGGGCGCTCAGTGGTACGACGGCAACATCTCCATCCCTGGCTGTGACAAAAATGTGAGTCTTTTTTCTGGGAATTTACTAAATTCCCTATTGTTATTGTGGATGGAAATGTGGGTCCTGTGTTGCTCTGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004160 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009570 GO:0009628 GO:0009651 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ILVD_EDD

Protein Analysis

220

Amino Acids

23.57

Weight (kDa)

8.3

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ILVD_EDD_N	PF00920	101 - 193	2.2e-34	Dihydroxy-acid/6-phosphogluconate dehydratase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23940 AT3G23940
fragaria_vesca	FvH4_7g04190
malus_domestica	MD04G1003600.v1.1
prunus_persica	Prupe.1G003100_v2.0.a1 Prupe.1G003100_v2.0.a1
pyrus_communis	pycom04g00370 pycom420g00750
rosa_chinensis	RchiOBHm_Chr1g0328531
rosa_laevigata	RLG00000029925
rosa_multiflora	Rmu_sc0001563.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321530
rosa_rugosa	Rorug01G0074800
rosa_samantha	Rh1AG093500 Rh1CG090600 Rh1DG096600
rosa_wichuraiana	Rw1G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	366
Acc65I	GGTACC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	458
AciI	CCGC	7 cut(s)	48, 51, 91, 138, 149, 176, 223
AcsI	RAATTY	2 cut(s)	595, 604
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	4 cut(s)	215, 332, 460, 539
AfiI	CCNNNNNNNGG	6 cut(s)	83, 84, 229, 249, 286, 311
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	243, 559
AluBI	AGCT	3 cut(s)	205, 219, 480
AluI	AGCT	3 cut(s)	205, 219, 480
Alw26I	GTCTC	2 cut(s)	492, 509
Ama87I	CYCGRG	2 cut(s)	255, 489
AoxI	GGCC	6 cut(s)	86, 135, 258, 277, 364, 399
ApaI	GGGCCC	1 cut(s)	90
ApeKI	GCWGC	2 cut(s)	53, 193
ApoI	RAATTY	2 cut(s)	595, 604
Asp718I	GGTACC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	9 cut(s)	86, 87, 101, 252, 258, 277, 364, 391, 637
AsuC2I	CCSGG	2 cut(s)	256, 257
AsuHPI	GGTGA	1 cut(s)	162
AvaI	CYCGRG	2 cut(s)	255, 489
AvaII	GGWCC	4 cut(s)	101, 252, 391, 637
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	2 cut(s)	90, 237
BbvI	GCAGC	2 cut(s)	40, 205
BccI	CCATC	3 cut(s)	164, 563, 619
BceAI	ACGGC	4 cut(s)	41, 286, 362, 559
BciT130I	CCWGG	2 cut(s)	245, 561
BcnI	CCSGG	2 cut(s)	256, 257
BcoDI	GTCTC	2 cut(s)	492, 509
BfmI	CTRYAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	366
BisI	GCNGC	5 cut(s)	51, 54, 138, 149, 194
BlsI	GCNGC	5 cut(s)	52, 55, 139, 150, 195
Bme1390I	CCNGG	4 cut(s)	245, 256, 257, 561
Bme18I	GGWCC	4 cut(s)	101, 252, 391, 637
BmeT110I	CYCGRG	2 cut(s)	255, 489
BmgT120I	GGNCC	9 cut(s)	86, 87, 101, 252, 258, 277, 364, 391, 637
BmrFI	CCNGG	4 cut(s)	245, 256, 257, 561
BmsI	GCATC	2 cut(s)	234, 519
BpuMI	CCSGG	2 cut(s)	256, 257
BsaJI	CCNNGG	7 cut(s)	97, 243, 244, 255, 285, 453, 559
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 224, 254
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 84, 229, 249, 286, 311
Bse118I	RCCGGY	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	245, 561
BseDI	CCNNGG	7 cut(s)	97, 243, 244, 255, 285, 453, 559
BseGI	GGATG	2 cut(s)	555, 630
BseLI	CCNNNNNNNGG	6 cut(s)	83, 84, 229, 249, 286, 311
BseMII	CTCAG	2 cut(s)	123, 545
BseRI	GAGGAG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	40, 205
BseYI	CCCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	6 cut(s)	88, 137, 260, 279, 366, 401
BshNI	GGYRCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	432
BsiHKCI	CYCGRG	2 cut(s)	255, 489
BsiSI	CCGG	3 cut(s)	256, 402, 418
BslFI	GGGAC	4 cut(s)	49, 226, 238, 506
BslI	CCNNNNNNNGG	6 cut(s)	83, 84, 229, 249, 286, 311
BsmAI	GTCTC	2 cut(s)	492, 509
BsmFI	GGGAC	4 cut(s)	49, 226, 238, 506
BsnI	GGCC	6 cut(s)	88, 137, 260, 279, 366, 401
BsoBI	CYCGRG	2 cut(s)	255, 489
Bsp120I	GGGCCC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	90, 237
Bsp143I	GATC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	7 cut(s)	48, 51, 91, 138, 149, 176, 223
BspANI	GGCC	6 cut(s)	88, 137, 260, 279, 366, 401
BspCNI	CTCAG	2 cut(s)	124, 544
BspMI	ACCTGC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	7 cut(s)	97, 243, 244, 255, 285, 453, 559
BssMI	GATC	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	285, 453
Bst2UI	CCWGG	2 cut(s)	245, 561
Bst4CI	ACNGT	2 cut(s)	430, 520
BstC8I	GCNNGC	5 cut(s)	9, 302, 346, 403, 482
BstDEI	CTNAG	2 cut(s)	132, 531
BstDSI	CCRYGG	2 cut(s)	97, 453
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	555, 630
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	2 cut(s)	492, 509
BstMBI	GATC	1 cut(s)	309
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	2 cut(s)	245, 561
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	243, 254, 255, 559
BstSFI	CTRYAG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	40, 205
BsuRI	GGCC	6 cut(s)	88, 137, 260, 279, 366, 401
BtgI	CCRYGG	2 cut(s)	97, 453
BtsCI	GGATG	2 cut(s)	555, 630
BtsIMutI	CAGTG	2 cut(s)	445, 539
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	5 cut(s)	9, 302, 346, 403, 482
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	9 cut(s)	86, 87, 101, 252, 258, 277, 364, 391, 637
Cfr9I	CCCGGG	1 cut(s)	255
Csp6I	GTAC	4 cut(s)	214, 331, 459, 538
CviAII	CATG	4 cut(s)	83, 352, 406, 454
CviQI	GTAC	4 cut(s)	214, 331, 459, 538
DdeI	CTNAG	2 cut(s)	132, 531
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	285, 453
Eco24I	GRGCYC	2 cut(s)	90, 237
Eco47I	GGWCC	4 cut(s)	101, 252, 391, 637
Eco88I	CYCGRG	2 cut(s)	255, 489
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoO109I	RGGNCCY	3 cut(s)	87, 252, 637
EcoRII	CCWGG	2 cut(s)	243, 559
EcoT14I	CCWWGG	2 cut(s)	285, 453
EcoT38I	GRGCYC	2 cut(s)	90, 237
ErhI	CCWWGG	2 cut(s)	285, 453
FaeI	CATG	4 cut(s)	86, 355, 409, 457
FaiI	YATR	6 cut(s)	84, 317, 353, 407, 455, 524
FaqI	GGGAC	4 cut(s)	49, 226, 238, 506
FatI	CATG	4 cut(s)	82, 351, 405, 453
FauI	CCCGC	3 cut(s)	98, 183, 230
Fnu4HI	GCNGC	5 cut(s)	51, 54, 138, 149, 194
FokI	GGATG	2 cut(s)	542, 637
FriOI	GRGCYC	2 cut(s)	90, 237
Fsp4HI	GCNGC	5 cut(s)	51, 54, 138, 149, 194
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	5 cut(s)	51, 54, 138, 149, 194
GsaI	CCCAGC	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	6 cut(s)	88, 137, 260, 279, 366, 401
HapII	CCGG	3 cut(s)	256, 402, 418
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	86, 355, 409, 457
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HinfI	GANTC	2 cut(s)	167, 580
HpaII	CCGG	3 cut(s)	256, 402, 418
HphI	GGTGA	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	119, 133, 373, 395
Hpy188III	TCNNGA	2 cut(s)	491, 514
Hpy99I	CGWCG	3 cut(s)	167, 325, 545
HpyAV	CCTTC	2 cut(s)	329, 380
HpyCH4III	ACNGT	2 cut(s)	430, 520
HpyCH4V	TGCA	6 cut(s)	7, 188, 268, 348, 355, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	132, 531
Hsp92II	CATG	4 cut(s)	86, 355, 409, 457
HspAI	GCGC	1 cut(s)	528
KflI	GGGWCCC	1 cut(s)	252
KpnI	GGTACC	1 cut(s)	462
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	2 cut(s)	224, 232
Lsp1109I	GCAGC	2 cut(s)	40, 205
LweI	GCATC	2 cut(s)	234, 519
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	90, 237
MluCI	AATT	3 cut(s)	595, 604, 654
MlyI	GAGTC	1 cut(s)	589
MroNI	GCCGGC	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	3 cut(s)	256, 402, 418
MspR9I	CCNGG	4 cut(s)	245, 256, 257, 561
MvaI	CCWGG	2 cut(s)	245, 561
MwoI	GCNNNNNNNGC	1 cut(s)	202
NaeI	GCCGGC	1 cut(s)	403
NciI	CCSGG	2 cut(s)	256, 257
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	1 cut(s)	309
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	4 cut(s)	86, 355, 409, 457
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	366
PasI	CCCWGGG	1 cut(s)	244
PdiI	GCCGGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	52, 55, 139, 150, 195
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PpuMI	RGGWCCY	2 cut(s)	252, 637
Psp5II	RGGWCCY	2 cut(s)	252, 637
Psp6I	CCWGG	2 cut(s)	243, 559
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	243, 559
PspOMI	GGGCCC	1 cut(s)	86
PspPI	GGNCC	9 cut(s)	86, 87, 101, 252, 258, 277, 364, 391, 637
PspPPI	RGGWCCY	2 cut(s)	252, 637
RsaI	GTAC	4 cut(s)	215, 332, 460, 539
RsaNI	GTAC	4 cut(s)	214, 331, 459, 538
SatI	GCNGC	5 cut(s)	51, 54, 138, 149, 194
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	9 cut(s)	86, 87, 101, 252, 258, 277, 364, 391, 637
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	4 cut(s)	245, 256, 257, 561
SduI	GDGCHC	2 cut(s)	90, 237
SetI	ASST	6 cut(s)	31, 207, 215, 221, 360, 482
SfaNI	GCATC	2 cut(s)	234, 519
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	4 cut(s)	101, 252, 391, 637
SmaI	CCCGGG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	595, 604, 654
SsiI	CCGC	7 cut(s)	48, 51, 91, 138, 149, 176, 223
StyD4I	CCNGG	4 cut(s)	243, 254, 255, 559
StyI	CCWWGG	2 cut(s)	285, 453
TaaI	ACNGT	2 cut(s)	430, 520
TaqI	TCGA	2 cut(s)	165, 513
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	595, 604, 654
TauI	GCSGC	3 cut(s)	53, 140, 151
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	2 cut(s)	445, 539
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	2 cut(s)	53, 193
Tsp45I	GTSAC	1 cut(s)	566
TspGWI	ACGGA	3 cut(s)	114, 151, 245
TspMI	CCCGGG	1 cut(s)	255
TspRI	CASTG	2 cut(s)	445, 539
VpaK11BI	GGWCC	4 cut(s)	101, 252, 391, 637
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	2 cut(s)	595, 604
XceI	RCATGY	1 cut(s)	355
XmaI	CCCGGG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.