Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014336

Physical Location & Seq

Genomic Coordinates Reverse (-)

51419765 .. 51423858

Gene Structure 4094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1827 bp

ATGCAAGGCGCTCTCTTAACCCCAACCACCTCTACTTCCACCATCCTACTCCGACCACGGCCTCAGCCGCGGCGGAGCAGGACCACTCCTCATGTATTCTCCATCCGAGCCTCCGCCCAATCCGCCCCCAATGCCGTCGCCGTCGACGAGAAGAAGCTCAACAAGTACAGCTCCCAAATCACGGAGCCCAAGTCCCAGGGCGGCTCTCAGGCCATTCTCCACGGCGTGGGGCTCTCCGACGCCGACATGACCAAGCCCCAGATCGGCATATCCTCCGTCTGGTACGAGGGCAACACTTGCAACATGCACCTGCTGGGCCTCTCGGAGGCCGTGAAGCAAGGCGTCCAAGAGGCCGGAATGGTCGGCTTCCGGTTCAACACGGTCGGCGTCAGTGATGCTATCTCTATGGGGACTAGGGGCATGTGCTACAGCTTGCAGTCTAGGGATTTGATTGCTGATAGCATTGAGACTGTCATGGGGGCTCAGTGGTATGATGGCAATATCTCCATTCCTGGCTGTGACAAAAATATGCCAGGTACTATTATGGCAATGGGCCGGCTCAACCGACCAAGTATCATGGTTTATGGGGGAACTATCAAGCCTGGGCATTTTCAAGGCAATACTTATGACATAGTATCCGCCTTTCAGATTTATGGAGAGTATGTAAGTGGATCCATTAGTGATGAGCACAGAAAGAATGTTGTTCGTAACTCCTGTCCTGGCGCTGGGGCTTGTGGTGGAATGTATACGGCTAATACAATGGCGTGTGCCATTGAAGCTTTAGGAATGTCTATACCTTACAGCTCTTCTACACCTGCTGAAGATCCATTAAAGTTGGATGAGTGCCGCTTGGCTGGGAAGTATCTGCTGGAATTATTAAAAATGGATTTAAAACCACGAGATATTATTACTCCAAAGTCGCTACATAATGCTATGGTTACTGTCATGGCATTGGGTGGATCTACCAACGCCGTGTTACACTTAATTGCTATTGCCAGGTCTGTGGGCCTGGACTTAACTCTAGATGATTTTCAGAGAGTCAGTGATAAGGTTCCATTTCTTGCAGATCTTAAGCCTAGTGGCAAGTATGTCATGGAGGATGTACACAAGATTGGAGGAACACCAGCCGTGCTTCGCTACCTATTGGAGAATGGACTTTTACATGGGGATTGTATAACGGTAACCGGGAGGACACTGGCTGAGAATGCCAAAAGCTTCCTTCCTTTGTCTACTGGGCAGGATATAATAAGACCCTTGGAAAATCCTATCAAGAAAACAGGCCACCTCCAAGTATTATATGGAAATCTTGCACCAAAAGGTTCTGTAGCAAAGATTACTGGGAAAGAAGGACTATATTTCTCTGGTCCAGCACTTGTCTTTGAAGGGGAGGAGGCTATGATTGCAGCTATCACAGAGAATCCAATGAATTTCAAGGGAAAAGTAGTTGTTATTCGAGGAGAGGGACCGAAGGGAGGACCAGGCATGCCTGAAATGTTAACACCTACCAGTGCAATAATGGGTGCAGGTCTTGGGAAGGAAACAGCATTGTTGACCGATGGTAGGTTTTCAGGAGGTTCACATGGATTTGTTGTTGGCCACATATGTCCTGAAGCACAGGAAGGTGGTCCTATTGGATTAATTGAAAATGGGGACATCATCACCGTTGATGTCGAAAAGAGAAGATTGGATGTTCAGTTAACAGATCAGGAAATAGATGCTCGAAGAAAGAACTGGGTTGCACCTCCATACAAGGCTAACCGTGGAATTTTGTACAAGTATATCAAGAATGTACAATCAGCTTCAAATGGATGCGTGACGGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004160 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009570 GO:0009628 GO:0009651 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ILVD_EDD

Protein Analysis

609

Amino Acids

65.02

Weight (kDa)

7.57

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ILVD_EDD_N	PF00920	85 - 402	9.9e-133	Dihydroxy-acid/6-phosphogluconate dehydratase N-terminal
ILV_EDD_C	PF24877	414 - 604	4.5e-74	Dihydroxy-acid/6-phosphogluconate dehydratase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23940 AT3G23940
fragaria_vesca	FvH4_7g04190
malus_domestica	MD04G1003600.v1.1
prunus_persica	Prupe.1G003100_v2.0.a1 Prupe.1G003100_v2.0.a1
pyrus_communis	pycom04g00370 pycom420g00750
rosa_chinensis	RchiOBHm_Chr1g0328531
rosa_laevigata	RLG00000029925
rosa_multiflora	Rmu_sc0001563.1_g000010
rosa_roxburghii	Rroxscaffold_4G00321530
rosa_rugosa	Rorug01G0074800
rosa_samantha	Rh1AG093500 Rh1CG090600 Rh1DG096600
rosa_wichuraiana	Rw1G007280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	318, 823
Acc36I	ACCTGC	3 cut(s)	318, 823, 1514
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccI	GTMKAC	3 cut(s)	144, 746, 1229
AccII	CGCG	1 cut(s)	70
AciI	CCGC	8 cut(s)	68, 70, 73, 114, 123, 201, 639, 847
AclWI	GGATC	4 cut(s)	666, 679, 818, 967
AcoI	YGGCCR	1 cut(s)	1594
AcsI	RAATTY	2 cut(s)	1426, 1764
AcuI	CTGAAG	2 cut(s)	840, 1629
AcyI	GRCGYC	3 cut(s)	240, 342, 387
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	6 cut(s)	167, 284, 538, 1104, 1772, 1791
AfiI	CCNNNNNNNGG	8 cut(s)	181, 226, 263, 279, 325, 725, 1472, 1560
AflII	CTTAAG	1 cut(s)	1070
AgsI	TTSAA	7 cut(s)	376, 614, 776, 1382, 1432, 1643, 1803
AjnI	CCWGG	8 cut(s)	195, 511, 532, 601, 718, 995, 1008, 1477
AluBI	AGCT	8 cut(s)	157, 171, 432, 779, 804, 1215, 1406, 1799
AluI	AGCT	8 cut(s)	157, 171, 432, 779, 804, 1215, 1406, 1799
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	4 cut(s)	666, 679, 818, 967
AoxI	GGCC	9 cut(s)	59, 210, 316, 327, 351, 553, 1006, 1279, 1594
ApeKI	GCWGC	1 cut(s)	1403
ApoI	RAATTY	2 cut(s)	1426, 1764
AseI	ATTAAT	1 cut(s)	1637
AspLEI	GCGC	2 cut(s)	11, 725
AspS9I	GGNCC	8 cut(s)	81, 316, 553, 1006, 1364, 1463, 1475, 1625
AsuC2I	CCSGG	1 cut(s)	1186
AsuHPI	GGTGA	1 cut(s)	1651
AvaII	GGWCC	5 cut(s)	81, 1364, 1463, 1475, 1625
BalI	TGGCCA	1 cut(s)	1596
BamHI	GGATCC	1 cut(s)	671
BanII	GRGCYC	3 cut(s)	189, 234, 484
BauI	CACGAG	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	1415
BccI	CCATC	4 cut(s)	50, 110, 488, 1550
BceAI	ACGGC	8 cut(s)	74, 119, 125, 238, 314, 765, 956, 1112
BciT130I	CCWGG	8 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1479
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	1186
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	4 cut(s)	414, 441, 1022, 1077
BfmI	CTRYAG	2 cut(s)	427, 1323
BfoI	RGCGCY	2 cut(s)	12, 726
BfrI	CTTAAG	1 cut(s)	1070
BfuAI	ACCTGC	3 cut(s)	318, 823, 1514
BfuI	GTATCC	1 cut(s)	646
BglII	AGATCT	1 cut(s)	1066
BisI	GCNGC	5 cut(s)	68, 71, 202, 847, 1404
BlsI	GCNGC	5 cut(s)	69, 72, 203, 848, 1405
Bme1390I	CCNGG	9 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1186, 1479
Bme18I	GGWCC	5 cut(s)	81, 1364, 1463, 1475, 1625
BmgT120I	GGNCC	8 cut(s)	81, 316, 553, 1006, 1364, 1463, 1475, 1625
BmiI	GGNNCC	4 cut(s)	186, 673, 1053, 1464
BmrFI	CCNGG	9 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1186, 1479
BmrI	ACTGGG	3 cut(s)	1242, 1347, 1741
BmsI	GCATC	3 cut(s)	385, 1705, 1799
BmuI	ACTGGG	3 cut(s)	1242, 1347, 1741
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	1186
BsaHI	GRCGYC	3 cut(s)	240, 342, 387
BsaJI	CCNNGG	8 cut(s)	56, 68, 195, 196, 220, 602, 1254, 1759
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 648, 678
Bsc4I	CCNNNNNNNGG	8 cut(s)	181, 226, 263, 279, 325, 725, 1472, 1560
Bse118I	RCCGGY	1 cut(s)	555
Bse1I	ACTGG	5 cut(s)	1200, 1237, 1342, 1506, 1736
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	8 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1479
BseDI	CCNNGG	8 cut(s)	56, 68, 195, 196, 220, 602, 1254, 1759
BseGI	GGATG	7 cut(s)	42, 102, 844, 1105, 1693, 1814, 1825
BseLI	CCNNNNNNNGG	8 cut(s)	181, 226, 263, 279, 325, 725, 1472, 1560
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	4 cut(s)	77, 221, 497, 1191
BseNI	ACTGG	5 cut(s)	1200, 1237, 1342, 1506, 1736
BseRI	GAGGAG	3 cut(s)	78, 1403, 1470
BseXI	GCAGC	1 cut(s)	1415
BseYI	CCCAGC	3 cut(s)	313, 725, 854
BsgI	GTGCAG	1 cut(s)	1542
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	9 cut(s)	61, 212, 318, 329, 353, 555, 1008, 1281, 1596
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	690
BsiSI	CCGG	4 cut(s)	354, 370, 556, 1185
BslFI	GGGAC	4 cut(s)	178, 424, 1476, 1664
BslI	CCNNNNNNNGG	8 cut(s)	181, 226, 263, 279, 325, 725, 1472, 1560
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	4 cut(s)	178, 424, 1476, 1664
BsmI	GAATGC	1 cut(s)	1210
BsnI	GGCC	9 cut(s)	61, 212, 318, 329, 353, 555, 1008, 1281, 1596
Bsp1286I	GDGCHC	4 cut(s)	189, 234, 484, 690
Bsp1407I	TGTACA	3 cut(s)	1102, 1770, 1789
Bsp143I	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
BspACI	CCGC	8 cut(s)	68, 70, 73, 114, 123, 201, 639, 847
BspANI	GGCC	9 cut(s)	61, 212, 318, 329, 353, 555, 1008, 1281, 1596
BspCNI	CTCAG	4 cut(s)	76, 220, 496, 1192
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	186, 673, 1053, 1464
BspMI	ACCTGC	3 cut(s)	318, 823, 1514
BspPI	GGATC	4 cut(s)	666, 679, 818, 967
BspQI	GCTCTTC	1 cut(s)	811
BspTI	CTTAAG	1 cut(s)	1070
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	555
BsrGI	TGTACA	3 cut(s)	1102, 1770, 1789
BsrI	ACTGG	5 cut(s)	1200, 1237, 1342, 1506, 1736
BssAI	RCCGGY	1 cut(s)	555
BssECI	CCNNGG	8 cut(s)	56, 68, 195, 196, 220, 602, 1254, 1759
BssMI	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
BssNAI	GTATAC	1 cut(s)	747
BssNI	GRCGYC	3 cut(s)	240, 342, 387
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	1254
Bst1107I	GTATAC	1 cut(s)	747
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	8 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1479
Bst4CI	ACNGT	6 cut(s)	382, 472, 943, 1180, 1663, 1760
Bst6I	CTCTTC	1 cut(s)	811
BstACI	GRCGYC	3 cut(s)	240, 342, 387
BstAFI	CTTAAG	1 cut(s)	1070
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstAUI	TGTACA	3 cut(s)	1102, 1770, 1789
BstC8I	GCNNGC	3 cut(s)	434, 557, 1484
BstDEI	CTNAG	4 cut(s)	63, 207, 483, 1200
BstDSI	CCRYGG	4 cut(s)	56, 68, 220, 1759
BstEII	GGTNACC	1 cut(s)	1180
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	7 cut(s)	42, 102, 844, 1105, 1693, 1814, 1825
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	2 cut(s)	12, 726
BstHHI	GCGC	2 cut(s)	11, 725
BstKTI	GATC	6 cut(s)	264, 674, 826, 962, 1069, 1705
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 122, 131, 297, 776, 1205, 1400
BstNI	CCWGG	8 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1479
BstNSI	RCATGY	3 cut(s)	307, 424, 1486
BstPI	GGTNACC	1 cut(s)	1180
BstSCI	CCNGG	9 cut(s)	195, 511, 532, 601, 718, 995, 1008, 1184, 1477
BstSFI	CTRYAG	2 cut(s)	427, 1323
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	1415
BstX2I	RGATCY	4 cut(s)	671, 823, 959, 1066
BstXI	CCANNNNNNTGG	1 cut(s)	1003
BstYI	RGATCY	4 cut(s)	671, 823, 959, 1066
BstZ17I	GTATAC	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	9 cut(s)	61, 212, 318, 329, 353, 555, 1008, 1281, 1596
BtgI	CCRYGG	4 cut(s)	56, 68, 220, 1759
BtsCI	GGATG	7 cut(s)	42, 102, 844, 1105, 1693, 1814, 1825
BtsIMutI	CAGTG	5 cut(s)	397, 491, 1048, 1193, 1513
BveI	ACCTGC	3 cut(s)	318, 823, 1514
Cac8I	GCNNGC	3 cut(s)	434, 557, 1484
CfoI	GCGC	2 cut(s)	11, 725
Cfr10I	RCCGGY	1 cut(s)	555
Cfr13I	GGNCC	8 cut(s)	81, 316, 553, 1006, 1364, 1463, 1475, 1625
Cfr42I	CCGCGG	1 cut(s)	71
CseI	GACGC	3 cut(s)	248, 331, 376
Csp6I	GTAC	6 cut(s)	166, 283, 537, 1103, 1771, 1790
CviQI	GTAC	6 cut(s)	166, 283, 537, 1103, 1771, 1790
DdeI	CTNAG	4 cut(s)	63, 207, 483, 1200
DpnI	GATC	6 cut(s)	263, 673, 825, 961, 1068, 1704
DpnII	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
DraI	TTTAAA	1 cut(s)	891
DraIII	CACNNNGTG	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	1594
Eam1104I	CTCTTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	811
EciI	GGCGGA	4 cut(s)	88, 103, 112, 628
Eco130I	CCWWGG	1 cut(s)	1254
Eco24I	GRGCYC	3 cut(s)	189, 234, 484
Eco47I	GGWCC	5 cut(s)	81, 1364, 1463, 1475, 1625
Eco57I	CTGAAG	2 cut(s)	840, 1629
Eco91I	GGTNACC	1 cut(s)	1180
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	1180
EcoRII	CCWGG	8 cut(s)	195, 511, 532, 601, 718, 995, 1008, 1477
EcoT14I	CCWWGG	1 cut(s)	1254
EcoT38I	GRGCYC	3 cut(s)	189, 234, 484
ErhI	CCWWGG	1 cut(s)	1254
FaqI	GGGAC	4 cut(s)	178, 424, 1476, 1664
FauNDI	CATATG	1 cut(s)	1601
FblI	GTMKAC	3 cut(s)	144, 746, 1229
Fnu4HI	GCNGC	5 cut(s)	68, 71, 202, 847, 1404
FokI	GGATG	6 cut(s)	29, 89, 851, 1112, 1700, 1821
FriOI	GRGCYC	3 cut(s)	189, 234, 484
Fsp4HI	GCNGC	5 cut(s)	68, 71, 202, 847, 1404
FspBI	CTAG	4 cut(s)	414, 441, 1022, 1077
GlaI	GCGC	2 cut(s)	10, 724
GluI	GCNGC	5 cut(s)	68, 71, 202, 847, 1404
GsaI	CCCAGC	3 cut(s)	317, 729, 858
HaeII	RGCGCY	2 cut(s)	12, 726
HaeIII	GGCC	9 cut(s)	61, 212, 318, 329, 353, 555, 1008, 1281, 1596
HapII	CCGG	4 cut(s)	354, 370, 556, 1185
HgaI	GACGC	3 cut(s)	248, 331, 376
HhaI	GCGC	2 cut(s)	11, 725
Hin1I	GRCGYC	3 cut(s)	240, 342, 387
Hin6I	GCGC	2 cut(s)	9, 723
HinP1I	GCGC	2 cut(s)	9, 723
HincII	GTYRAC	4 cut(s)	145, 1497, 1551, 1698
HindII	GTYRAC	4 cut(s)	145, 1497, 1551, 1698
HindIII	AAGCTT	2 cut(s)	777, 1213
HinfI	GANTC	2 cut(s)	1038, 1417
HpaI	GTTAAC	2 cut(s)	1497, 1698
HpaII	CCGG	4 cut(s)	354, 370, 556, 1185
HphI	GGTGA	1 cut(s)	1651
Hpy166II	GTNNAC	8 cut(s)	145, 747, 1105, 1230, 1497, 1551, 1577, 1698
Hpy188I	TCNGA	6 cut(s)	53, 107, 238, 325, 648, 1035
Hpy188III	TCNNGA	6 cut(s)	1022, 1270, 1569, 1607, 1706, 1783
Hpy8I	GTNNAC	8 cut(s)	145, 747, 1105, 1230, 1497, 1551, 1577, 1698
Hpy99I	CGWCG	4 cut(s)	140, 146, 149, 242
HpyAV	CCTTC	6 cut(s)	1229, 1340, 1376, 1462, 1528, 1613
HpyCH4III	ACNGT	6 cut(s)	382, 472, 943, 1180, 1663, 1760
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 122, 131, 297, 776, 1205, 1400
HpyF3I	CTNAG	4 cut(s)	63, 207, 483, 1200
Hsp92I	GRCGYC	3 cut(s)	240, 342, 387
HspAI	GCGC	2 cut(s)	9, 723
KroI	GCCGGC	1 cut(s)	555
KroNI	GCCGGC	1 cut(s)	557
KspAI	GTTAAC	2 cut(s)	1497, 1698
KspI	CCGCGG	1 cut(s)	71
Kzo9I	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
LguI	GCTCTTC	1 cut(s)	811
LmnI	GCTCC	3 cut(s)	75, 176, 184
Lsp1109I	GCAGC	1 cut(s)	1415
LweI	GCATC	3 cut(s)	385, 1705, 1799
MaeI	CTAG	4 cut(s)	414, 441, 1022, 1077
MaeIII	GTNAC	6 cut(s)	518, 707, 937, 975, 1180, 1813
MalI	GATC	6 cut(s)	263, 673, 825, 961, 1068, 1704
MboI	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
MboII	GAAGA	5 cut(s)	163, 798, 833, 1692, 1734
MflI	RGATCY	4 cut(s)	671, 823, 959, 1066
MhlI	GDGCHC	4 cut(s)	189, 234, 484, 690
MlsI	TGGCCA	1 cut(s)	1596
MluCI	AATT	5 cut(s)	872, 984, 1426, 1638, 1764
MluNI	TGGCCA	1 cut(s)	1596
MlyI	GAGTC	1 cut(s)	1047
MmeI	TCCRAC	3 cut(s)	76, 261, 816
Mox20I	TGGCCA	1 cut(s)	1596
MroNI	GCCGGC	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	1596
Msp20I	TGGCCA	1 cut(s)	1596
MspA1I	CMGCKG	1 cut(s)	70
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	4 cut(s)	354, 370, 556, 1185
MspR9I	CCNGG	9 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1186, 1479
Mva1269I	GAATGC	1 cut(s)	1210
MvaI	CCWGG	8 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1479
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	7 cut(s)	67, 122, 131, 297, 776, 1205, 1400
NaeI	GCCGGC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	1186
NdeI	CATATG	1 cut(s)	1601
NdeII	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
NgoMIV	GCCGGC	1 cut(s)	555
NlaIV	GGNNCC	4 cut(s)	186, 673, 1053, 1464
NmuCI	GTSAC	2 cut(s)	518, 1813
NspI	RCATGY	3 cut(s)	307, 424, 1486
PaeI	GCATGC	1 cut(s)	1486
PaqCI	CACCTGC	2 cut(s)	318, 823
PasI	CCCWGGG	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	1210
PdiI	GCCGGC	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	1417
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	69, 72, 203, 848, 1405
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
PshBI	ATTAAT	1 cut(s)	1637
Psp6I	CCWGG	8 cut(s)	195, 511, 532, 601, 718, 995, 1008, 1477
PspEI	GGTNACC	1 cut(s)	1180
PspFI	CCCAGC	3 cut(s)	313, 725, 854
PspGI	CCWGG	8 cut(s)	195, 511, 532, 601, 718, 995, 1008, 1477
PspN4I	GGNNCC	4 cut(s)	186, 673, 1053, 1464
PspPI	GGNCC	8 cut(s)	81, 316, 553, 1006, 1364, 1463, 1475, 1625
PsuI	RGATCY	4 cut(s)	671, 823, 959, 1066
RsaI	GTAC	6 cut(s)	167, 284, 538, 1104, 1772, 1791
RsaNI	GTAC	6 cut(s)	166, 283, 537, 1103, 1771, 1790
SacII	CCGCGG	1 cut(s)	71
SalI	GTCGAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	811
SatI	GCNGC	5 cut(s)	68, 71, 202, 847, 1404
Sau3AI	GATC	6 cut(s)	261, 671, 823, 959, 1066, 1702
Sau96I	GGNCC	8 cut(s)	81, 316, 553, 1006, 1364, 1463, 1475, 1625
SchI	GAGTC	1 cut(s)	1047
ScrFI	CCNGG	9 cut(s)	197, 513, 534, 603, 720, 997, 1010, 1186, 1479
SduI	GDGCHC	4 cut(s)	189, 234, 484, 690
SfaNI	GCATC	3 cut(s)	385, 1705, 1799
SfcI	CTRYAG	2 cut(s)	427, 1323
Sfr303I	CCGCGG	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	71
SgrDI	CGTCGACG	1 cut(s)	143
SinI	GGWCC	5 cut(s)	81, 1364, 1463, 1475, 1625
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
SphI	GCATGC	1 cut(s)	1486
Sse9I	AATT	5 cut(s)	872, 984, 1426, 1638, 1764
SsiI	CCGC	8 cut(s)	68, 70, 73, 114, 123, 201, 639, 847
SspMI	CTAG	4 cut(s)	414, 441, 1022, 1077
StyD4I	CCNGG	9 cut(s)	195, 511, 532, 601, 718, 995, 1008, 1184, 1477
StyI	CCWWGG	1 cut(s)	1254
TaaI	ACNGT	6 cut(s)	382, 472, 943, 1180, 1663, 1760
TaqI	TCGA	4 cut(s)	144, 1453, 1671, 1720
TaqII	GACCGA	2 cut(s)	1480, 1568
TasI	AATT	5 cut(s)	872, 984, 1426, 1638, 1764
TatI	WGTACW	4 cut(s)	165, 1102, 1770, 1789
TauI	GCSGC	4 cut(s)	70, 73, 204, 849
TfiI	GAWTC	1 cut(s)	1417
TscAI	CASTG	5 cut(s)	397, 491, 1048, 1200, 1513
TseFI	GTSAC	2 cut(s)	518, 1813
TseI	GCWGC	1 cut(s)	1403
Tsp45I	GTSAC	2 cut(s)	518, 1813
TspDTI	ATGAA	1 cut(s)	1439
TspGWI	ACGGA	2 cut(s)	197, 265
TspRI	CASTG	5 cut(s)	397, 491, 1048, 1200, 1513
Van91I	CCANNNNNTGG	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	1070
VpaK11BI	GGWCC	5 cut(s)	81, 1364, 1463, 1475, 1625
VspI	ATTAAT	1 cut(s)	1637
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	2 cut(s)	1426, 1764
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	3 cut(s)	307, 424, 1486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1295, 1513
XmiI	GTMKAC	3 cut(s)	144, 746, 1229
XspI	CTAG	4 cut(s)	414, 441, 1022, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.