RchiOBHm_Chr7g0178001

NF-X1-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012624
Physical Location & Seq
Reverse (-)
827123 .. 831259
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2382 bp
ATGGATTGGGATTCTCAGCTCAGTCCTGCTACTTCCTCTAATCAGTTCAAGGATACATGGAAGCATGCACTTCTTCTGTCATTTCAGAGCTTTGGAGTGATATATGGTCAAATGAGTACTGCTCCCTTATATGTCTTTGGGACAATTCATGCACAAGATATCAAATCGGAGGATACAGTTTATGAACTATTCTCCTTCATTTTCTGGACTATGACCATCATTACTTTACTGAAGTATGTCTGTATAGTATTAAGAGCTGATGATAATGGAGAAGGTGGTACTTTTGCTCTGTACTCACTCTTGTGTAGGCATGCCAAAGTGGGTCTGCTTCCAAATGACAGAAGTGCTGATGAGGTTATGCATTATGAGAGGGAAATTCCTTTCACGATGAAGGTGGAATCGAGGGCTAAAAGAACCATTGAAAAACATAAAAGTAGTCACTATGTCATGTTGGTCCTGGCTCTGTTAGGTTCCTGCATGACAATCGGCGTTGCGGTGCTTACCCCAGCTCTTTCGGTCTATTCAGCTTCATCAGGTGTTCAAAGATCACTGTCAGACATGGCCCACCGATTTTCATCTTCGGAAAGGAAACAAGAGTCAATAGCAAAAGCTTTCAAGGATTATGTACCAGTTCCCTTGGCATCTGCTATATTGGTGTGCCTCTTCATGCTGCAGCATTGTGGGACTAGTAAAATTGGGTTTATGTTTGCTCCGATTATCATTATTTGGCTGATATGTATTGGTGGCGTGGGTATATATAATATTTTCTACTGGGACAAACAAATTGTCCATGCAATCTCTCCTGTATACATGTACAGATTTGTTAGGAACATTAACGTTGACCGTTGGAGGGCATTAGGCAGCATAGTTCTATGTGTAGCAGGGTCAGAGGCAATGTTTGCAGATCTAGGTCATTTCAGAAAGAAATCCATCAAGATTATATTTGTATGCTTGATCTATCCTGTTCTTGTTCTATGCTATGCCGGTCAGGCTGCATTTATCTCCAAAAACTTTCATGAGGATGATTACAATCATCTCAGTGAATCCTTTCCTACACCAGTTCGCGACTGGTTCATAGCATTATCCCTACTTGCTTCAGCTGTAGGAAGTCAAGCTACCATAACAGCCAGTTTCTCCATCATAAATCAGTGCCTGGCACTTGGTTGTTTTCCCAGAGTAAAAGTTATTCATACATCAGATAAGATACATGGGCAGGTTTATATTCCTGATATCAACTGGATATTGATGGTTCTATGCCTTACTGTTACAATTGGTTTTCATGATATTGAGAAAATTGGCAATGCCACAGGTTTGGCCATAATTTCTCCAATGGTTGTCACAACTTGTCTCATGTCACTGGTAATTGCCTTATACTGGGAGAAGAGTTTGTATCAATCTATCTGTTTTCTACTGTTCTTCGGCTTCATTGAGGCGATGTATGTGTCAGCTTGTATGTTGAATGTCCATAAGGGAGCTTGGTATTTGGTTTTCCTATTGGCATTGTCTTTGACTATCATGATTTCATGGCATTATGGAACCAAAAAGAAGCTCGAATTCGATTTAACAAACAAGGTGTCTGCAGAATGGCTCACAGCTATTAGTCCAGCACTAGGAGTTACCAGGGTACCTGGCATTGGTTTCATTTATACTGATATAGTCTCAGGAATTCCGGCTTTCTTCTCACACTTCATTACGAATCTTCCTGCATTTCATCAAGTTTTGATCTTTGTGTCCTTCAAGTCTCTGCCAGTTCCATATGTCCCTGCAACTCGGAGGTACCTTGTGGGAAGGATCGGGCCAAAAGATCTTAAAATATATCGTTGTGTGGTGAGATATGGATATTGTGAGCATATTAGGGACACCGATGATTTTGAGGAAGAGATTATTGGTTCCATTGGAGAATTCATTTCCGTGGAAGAAAATGACTTTGATTCCCTGAATTCATCACAAGATAGAATGATCATAGTTGGCAAGCCACCATCAAATGGAAGTGCTTTGATTCCTTTAAATGAGATCACCTCATATGAGGACTCCGTGAGCTTGGTGCACAATGAAACCCGGTTAAGTACATTGGCCGATGCATGTGAGAGTGGTATGGTTTCGGTGCAGAGAAAAAAGGTTCGGTTCATGTTGCCTCCTAATAGTCCTAAGATGCGAGTATCTGTTAGGGAGGAGCTCCAAGAACTGATTGATGCTAGGGAGAGTGGTACTGCATATTTCTTGGGTCAGGTGCATTTGGCAGTTCGTGAAGGCTCAAACATATTCAAGCGGTTACTGATCATGACCTATGTTTTGAGTGAGAAGAATTGCAGAGAGCCTCCAGTGGCACTCAACATTCCTCATGCTGCTCTTGTTGAGGTTGGTATGGTCTGTAGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0000982 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009696 GO:0009697 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010188 GO:0010310 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010817 GO:0016053 GO:0016070 GO:0016999 GO:0017000 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032774 GO:0032787 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042445 GO:0042446 GO:0042537 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046189 GO:0046394 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098542 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 map05165
Pfam Domains
Protein Families
K_trans R3H zf-NF-X1

Protein Analysis

793

Amino Acids

88.85

Weight (kDa)

7.28

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K_trans PF02705 27 - 531 5.2e-133 K+ potassium transporter integral membrane domain
K_trans_C PF22776 547 - 793 2.6e-23 K+ potassium transporter C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1204
Acc65I GGTACC 2 cut(s) 1624, 1776
AccB1I GGYRCC 2 cut(s) 1624, 1776
AccB7I CCANNNNNTGG 1 cut(s) 1985
AccI GTMKAC 1 cut(s) 807
AccII CGCG 1 cut(s) 1065
AciI CCGC 2 cut(s) 494, 2269
AclI AACGTT 1 cut(s) 837
AclWI GGATC 1 cut(s) 1799
AcoI YGGCCR 2 cut(s) 1314, 2073
AcsI RAATTY 5 cut(s) 375, 1553, 1665, 1901, 1939
AcuI CTGAAG 2 cut(s) 251, 1080
AfaI GTAC 9 cut(s) 118, 280, 293, 627, 815, 1626, 1778, 2068, 2209
AfiI CCNNNNNNNGG 5 cut(s) 850, 1374, 1610, 1634, 1985
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 7 cut(s) 49, 422, 542, 616, 1459, 1738, 2266
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 4 cut(s) 456, 1152, 1619, 1627
AjuI GAANNNNNNNTTGG 2 cut(s) 1869, 1901
AleI CACNNNNGTG 1 cut(s) 301
Alw21I GWGCWC 2 cut(s) 2049, 2178
Alw26I GTCTC 3 cut(s) 1352, 1663, 1746
Alw44I GTGCAC 1 cut(s) 2045
AlwI GGATC 1 cut(s) 1799
AlwNI CAGNNNCTG 1 cut(s) 1153
AoxI GGCC 4 cut(s) 561, 1314, 1796, 2073
ApaLI GTGCAC 1 cut(s) 2045
ApeKI GCWGC 5 cut(s) 670, 673, 861, 992, 2345
ApoI RAATTY 5 cut(s) 375, 1553, 1665, 1901, 1939
ArsI GACNNNNNNTTYG 6 cut(s) 771, 803, 1559, 1591, 2275, 2307
Asp700I GAANNNNTTC 1 cut(s) 1047
Asp718I GGTACC 2 cut(s) 1624, 1776
AspS9I GGNCC 3 cut(s) 454, 562, 1796
AsuC2I CCSGG 1 cut(s) 2059
AsuHPI GGTGA 2 cut(s) 1840, 2008
AvaII GGWCC 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 2049
BaeI ACNNNNGTAYC 2 cut(s) 1608, 1641
BalI TGGCCA 1 cut(s) 1316
BanI GGYRCC 2 cut(s) 1624, 1776
BanII GRGCYC 1 cut(s) 2178
BarI GAAGNNNNNNTAC 2 cut(s) 1099, 1131
Bbv12I GWGCWC 2 cut(s) 2049, 2178
BbvI GCAGC 5 cut(s) 657, 685, 873, 979, 2332
BccI CCATC 5 cut(s) 224, 938, 1145, 1240, 1987
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciT130I CCWGG 4 cut(s) 458, 1154, 1621, 1629
BciVI GTATCC 2 cut(s) 46, 166
BclI TGATCA 2 cut(s) 1959, 2277
BcnI CCSGG 1 cut(s) 2059
BcoDI GTCTC 3 cut(s) 1352, 1663, 1746
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 4 cut(s) 687, 908, 1610, 2196
BfmI CTRYAG 4 cut(s) 671, 1101, 1578, 2371
BfuAI ACCTGC 1 cut(s) 1204
BfuI GTATCC 2 cut(s) 46, 166
BglI GCCNNNNNGGC 1 cut(s) 989
BglII AGATCT 2 cut(s) 904, 1804
BisI GCNGC 5 cut(s) 671, 674, 862, 993, 2346
BlsI GCNGC 5 cut(s) 672, 675, 863, 994, 2347
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 5 cut(s) 458, 1154, 1621, 1629, 2059
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 3 cut(s) 454, 562, 1796
BmiI GGNNCC 5 cut(s) 472, 1537, 1626, 1778, 1891
BmrFI CCNGG 5 cut(s) 458, 1154, 1621, 1629, 2059
BmrI ACTGGG 2 cut(s) 781, 1384
BmsI GCATC 4 cut(s) 650, 2068, 2142, 2182
BmuI ACTGGG 2 cut(s) 781, 1384
BplI GAGNNNNNCTC 4 cut(s) 106, 138, 2003, 2035
BpmI CTGGAG 1 cut(s) 2304
BpuMI CCSGG 1 cut(s) 2059
BsaBI GATNNNNATC 2 cut(s) 574, 1029
BsaJI CCNNGG 3 cut(s) 636, 1620, 1911
Bsc4I CCNNNNNNNGG 5 cut(s) 850, 1374, 1610, 1634, 1985
Bse118I RCCGGY 1 cut(s) 983
Bse3DI GCAATG 2 cut(s) 900, 1306
Bse8I GATNNNNATC 2 cut(s) 574, 1029
BseBI CCWGG 4 cut(s) 458, 1154, 1621, 1629
BseDI CCNNGG 3 cut(s) 636, 1620, 1911
BseGI GGATG 1 cut(s) 1027
BseJI GATNNNNATC 2 cut(s) 574, 1029
BseLI CCNNNNNNNGG 5 cut(s) 850, 1374, 1610, 1634, 1985
BseMI GCAATG 2 cut(s) 900, 1306
BseMII CTCAG 4 cut(s) 29, 34, 1051, 1674
BseRI GAGGAG 1 cut(s) 2186
BseSI GKGCMC 1 cut(s) 2049
BseXI GCAGC 5 cut(s) 657, 685, 873, 979, 2332
BseYI CCCAGC 1 cut(s) 505
BsgI GTGCAG 1 cut(s) 2126
Bsh1236I CGCG 1 cut(s) 1065
BshFI GGCC 4 cut(s) 563, 1316, 1798, 2075
BshNI GGYRCC 2 cut(s) 1624, 1776
BsiHKAI GWGCWC 2 cut(s) 2049, 2178
BsiSI CCGG 3 cut(s) 984, 1670, 2059
BslFI GGGAC 5 cut(s) 154, 697, 788, 1745, 1871
BslI CCNNNNNNNGG 5 cut(s) 850, 1374, 1610, 1634, 1985
BsmAI GTCTC 3 cut(s) 1352, 1663, 1746
BsmFI GGGAC 5 cut(s) 154, 697, 788, 1745, 1871
BsnI GGCC 4 cut(s) 563, 1316, 1798, 2075
Bsp1286I GDGCHC 2 cut(s) 2049, 2178
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
Bsp68I TCGCGA 1 cut(s) 1065
BspACI CCGC 2 cut(s) 494, 2269
BspANI GGCC 4 cut(s) 563, 1316, 1798, 2075
BspCNI CTCAG 4 cut(s) 28, 33, 1050, 1673
BspFNI CGCG 1 cut(s) 1065
BspHI TCATGA 4 cut(s) 1015, 1279, 1515, 2280
BspLI GGNNCC 5 cut(s) 472, 1537, 1626, 1778, 1891
BspMAI CTGCAG 2 cut(s) 675, 1582
BspMI ACCTGC 1 cut(s) 1204
BspPI GGATC 1 cut(s) 1799
BspT107I GGYRCC 2 cut(s) 1624, 1776
BsrDI GCAATG 2 cut(s) 900, 1306
BsrFI RCCGGY 1 cut(s) 983
BsrGI TGTACA 1 cut(s) 813
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 3 cut(s) 636, 1620, 1911
BssMI GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
BssNAI GTATAC 1 cut(s) 808
BssT1I CCWWGG 1 cut(s) 636
Bst1107I GTATAC 1 cut(s) 808
Bst2UI CCWGG 4 cut(s) 458, 1154, 1621, 1629
Bst4CI ACNGT 5 cut(s) 178, 552, 845, 1264, 1413
Bst6I CTCTTC 3 cut(s) 668, 1376, 1872
BstAPI GCANNNNNTGC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 813
BstC8I GCNNGC 3 cut(s) 66, 312, 1973
BstDEI CTNAG 5 cut(s) 15, 20, 1037, 1660, 2148
BstDSI CCRYGG 1 cut(s) 1911
BstF5I GGATG 1 cut(s) 1027
BstFNI CGCG 1 cut(s) 1065
BstKTI GATC 9 cut(s) 548, 907, 957, 1725, 1794, 1807, 1962, 2016, 2280
BstMAI GTCTC 3 cut(s) 1352, 1663, 1746
BstMBI GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
BstMWI GCNNNNNNNGC 2 cut(s) 899, 989
BstNI CCWGG 4 cut(s) 458, 1154, 1621, 1629
BstNSI RCATGY 4 cut(s) 68, 314, 814, 2085
BstSCI CCNGG 5 cut(s) 456, 1152, 1619, 1627, 2057
BstSFI CTRYAG 4 cut(s) 671, 1101, 1578, 2371
BstSLI GKGCMC 1 cut(s) 2049
BstUI CGCG 1 cut(s) 1065
BstV1I GCAGC 5 cut(s) 657, 685, 873, 979, 2332
BstX2I RGATCY 2 cut(s) 904, 1804
BstXI CCANNNNNNTGG 1 cut(s) 1312
BstYI RGATCY 2 cut(s) 904, 1804
BstZ17I GTATAC 1 cut(s) 808
BsuI GTATCC 2 cut(s) 46, 166
BsuRI GGCC 4 cut(s) 563, 1316, 1798, 2075
BtgI CCRYGG 1 cut(s) 1911
BtgZI GCGATG 1 cut(s) 1448
BtsCI GGATG 1 cut(s) 1027
BtsIMutI CAGTG 5 cut(s) 548, 1045, 1154, 1355, 2328
BtuMI TCGCGA 1 cut(s) 1065
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 3 cut(s) 66, 312, 1973
CaiI CAGNNNCTG 1 cut(s) 1153
CciI TCATGA 4 cut(s) 1015, 1279, 1515, 2280
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 3 cut(s) 454, 562, 1796
Csp6I GTAC 9 cut(s) 117, 279, 292, 626, 814, 1625, 1777, 2067, 2208
CviQI GTAC 9 cut(s) 117, 279, 292, 626, 814, 1625, 1777, 2067, 2208
DdeI CTNAG 5 cut(s) 15, 20, 1037, 1660, 2148
DpnI GATC 9 cut(s) 547, 906, 956, 1724, 1793, 1806, 1961, 2015, 2279
DpnII GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
DraI TTTAAA 1 cut(s) 2007
EaeI YGGCCR 2 cut(s) 1314, 2073
Eam1104I CTCTTC 3 cut(s) 668, 1376, 1872
EarI CTCTTC 3 cut(s) 668, 1376, 1872
Ecl136II GAGCTC 1 cut(s) 2176
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 2178
Eco32I GATATC 2 cut(s) 160, 1231
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 2176
Eco57I CTGAAG 2 cut(s) 251, 1080
EcoICRI GAGCTC 1 cut(s) 2176
EcoRI GAATTC 4 cut(s) 1553, 1665, 1901, 1939
EcoRII CCWGG 4 cut(s) 456, 1152, 1619, 1627
EcoRV GATATC 2 cut(s) 160, 1231
EcoT14I CCWWGG 1 cut(s) 636
EcoT22I ATGCAT 2 cut(s) 363, 2083
EcoT38I GRGCYC 1 cut(s) 2178
ErhI CCWWGG 1 cut(s) 636
FaqI GGGAC 5 cut(s) 154, 697, 788, 1745, 1871
FauNDI CATATG 2 cut(s) 1756, 2023
FbaI TGATCA 2 cut(s) 1959, 2277
FblI GTMKAC 1 cut(s) 807
Fnu4HI GCNGC 5 cut(s) 671, 674, 862, 993, 2346
FokI GGATG 1 cut(s) 1034
FriOI GRGCYC 1 cut(s) 2178
Fsp4HI GCNGC 5 cut(s) 671, 674, 862, 993, 2346
FspBI CTAG 4 cut(s) 687, 908, 1610, 2196
GluI GCNGC 5 cut(s) 671, 674, 862, 993, 2346
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 2304
HaeIII GGCC 4 cut(s) 563, 1316, 1798, 2075
HapII CCGG 3 cut(s) 984, 1670, 2059
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 609
HinfI GANTC 8 cut(s) 11, 398, 596, 1043, 1696, 1931, 1999, 2030
HpaII CCGG 3 cut(s) 984, 1670, 2059
HphI GGTGA 2 cut(s) 1840, 2008
Hpy166II GTNNAC 3 cut(s) 808, 841, 2047
Hpy188I TCNGA 9 cut(s) 87, 169, 556, 583, 714, 889, 920, 1198, 1773
Hpy8I GTNNAC 3 cut(s) 808, 841, 2047
HpyAV CCTTC 6 cut(s) 205, 266, 385, 1744, 1782, 2243
HpyCH4III ACNGT 5 cut(s) 178, 552, 845, 1264, 1413
HpyCH4IV ACGT 1 cut(s) 837
HpyF10VI GCNNNNNNNGC 2 cut(s) 899, 989
HpyF3I CTNAG 5 cut(s) 15, 20, 1037, 1660, 2148
HpySE526I ACGT 1 cut(s) 837
KpnI GGTACC 2 cut(s) 1628, 1780
Ksp22I TGATCA 2 cut(s) 1959, 2277
Kzo9I GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
LmnI GCTCC 5 cut(s) 127, 715, 1472, 2173, 2181
Lsp1109I GCAGC 5 cut(s) 657, 685, 873, 979, 2332
LweI GCATC 4 cut(s) 650, 2068, 2142, 2182
MaeI CTAG 4 cut(s) 687, 908, 1610, 2196
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 6 cut(s) 437, 1264, 1336, 1353, 1615, 2271
MalI GATC 9 cut(s) 547, 906, 956, 1724, 1793, 1806, 1961, 2015, 2279
MboI GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
MfeI CAATTG 1 cut(s) 1269
MflI RGATCY 2 cut(s) 904, 1804
MhlI GDGCHC 2 cut(s) 2049, 2178
MlsI TGGCCA 1 cut(s) 1316
MluNI TGGCCA 1 cut(s) 1316
MlyI GAGTC 2 cut(s) 605, 2024
MmeI TCCRAC 1 cut(s) 827
Mox20I TGGCCA 1 cut(s) 1316
Mph1103I ATGCAT 2 cut(s) 363, 2083
MroXI GAANNNNTTC 1 cut(s) 1047
MscI TGGCCA 1 cut(s) 1316
MseI TTAA 6 cut(s) 251, 834, 1562, 1809, 2006, 2063
MslI CAYNNNNRTG 4 cut(s) 301, 1020, 1038, 1910
Msp20I TGGCCA 1 cut(s) 1316
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 3 cut(s) 984, 1670, 2059
MspR9I CCNGG 5 cut(s) 458, 1154, 1621, 1629, 2059
MunI CAATTG 1 cut(s) 1269
MvaI CCWGG 4 cut(s) 458, 1154, 1621, 1629
MvnI CGCG 1 cut(s) 1065
MwoI GCNNNNNNNGC 2 cut(s) 899, 989
NciI CCSGG 1 cut(s) 2059
NdeI CATATG 2 cut(s) 1756, 2023
NdeII GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
NlaIV GGNNCC 5 cut(s) 472, 1537, 1626, 1778, 1891
NmuCI GTSAC 3 cut(s) 437, 1336, 1353
NruI TCGCGA 1 cut(s) 1065
NsiI ATGCAT 2 cut(s) 363, 2083
NspI RCATGY 4 cut(s) 68, 314, 814, 2085
OliI CACNNNNGTG 1 cut(s) 301
PaeI GCATGC 2 cut(s) 68, 314
PagI TCATGA 4 cut(s) 1015, 1279, 1515, 2280
PciI ACATGT 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 1047
PfeI GAWTC 6 cut(s) 11, 398, 1043, 1696, 1931, 1999
PflMI CCANNNNNTGG 1 cut(s) 1985
PkrI GCNGC 5 cut(s) 672, 675, 863, 994, 2347
PleI GAGTC 2 cut(s) 604, 2024
PpsI GAGTC 2 cut(s) 604, 2024
PscI ACATGT 1 cut(s) 810
Psp124BI GAGCTC 1 cut(s) 2178
Psp1406I AACGTT 1 cut(s) 837
Psp6I CCWGG 4 cut(s) 456, 1152, 1619, 1627
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 4 cut(s) 456, 1152, 1619, 1627
PspN4I GGNNCC 5 cut(s) 472, 1537, 1626, 1778, 1891
PspPI GGNCC 3 cut(s) 454, 562, 1796
PstI CTGCAG 2 cut(s) 675, 1582
PstNI CAGNNNCTG 1 cut(s) 1153
PsuI RGATCY 2 cut(s) 904, 1804
PvuII CAGCTG 1 cut(s) 1100
RruI TCGCGA 1 cut(s) 1065
RsaI GTAC 9 cut(s) 118, 280, 293, 627, 815, 1626, 1778, 2068, 2209
RsaNI GTAC 9 cut(s) 117, 279, 292, 626, 814, 1625, 1777, 2067, 2208
RseI CAYNNNNRTG 4 cut(s) 301, 1020, 1038, 1910
SacI GAGCTC 1 cut(s) 2178
SaqAI TTAA 6 cut(s) 251, 834, 1562, 1809, 2006, 2063
SatI GCNGC 5 cut(s) 671, 674, 862, 993, 2346
Sau3AI GATC 9 cut(s) 545, 904, 954, 1722, 1791, 1804, 1959, 2013, 2277
Sau96I GGNCC 3 cut(s) 454, 562, 1796
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 2 cut(s) 605, 2024
ScrFI CCNGG 5 cut(s) 458, 1154, 1621, 1629, 2059
SduI GDGCHC 2 cut(s) 2049, 2178
SfaNI GCATC 4 cut(s) 650, 2068, 2142, 2182
SfcI CTRYAG 4 cut(s) 671, 1101, 1578, 2371
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 4 cut(s) 301, 1020, 1038, 1910
SpeI ACTAGT 1 cut(s) 686
SphI GCATGC 2 cut(s) 68, 314
SsiI CCGC 2 cut(s) 494, 2269
SspI AATATT 1 cut(s) 763
SspMI CTAG 4 cut(s) 687, 908, 1610, 2196
SstI GAGCTC 1 cut(s) 2178
StyD4I CCNGG 5 cut(s) 456, 1152, 1619, 1627, 2057
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 5 cut(s) 178, 552, 845, 1264, 1413
TaiI ACGT 1 cut(s) 840
TaqI TCGA 3 cut(s) 401, 1551, 1557
TaqII GACCGA 1 cut(s) 505
TatI WGTACW 4 cut(s) 116, 291, 813, 2066
TfiI GAWTC 6 cut(s) 11, 398, 1043, 1696, 1931, 1999
Tru1I TTAA 6 cut(s) 251, 834, 1562, 1809, 2006, 2063
Tru9I TTAA 6 cut(s) 251, 834, 1562, 1809, 2006, 2063
TscAI CASTG 5 cut(s) 555, 1045, 1154, 1362, 2328
TseFI GTSAC 3 cut(s) 437, 1336, 1353
TseI GCWGC 5 cut(s) 670, 673, 861, 992, 2345
Tsp45I GTSAC 3 cut(s) 437, 1336, 1353
TspGWI ACGGA 2 cut(s) 1900, 2023
TspRI CASTG 5 cut(s) 555, 1045, 1154, 1362, 2328
Van91I CCANNNNNTGG 1 cut(s) 1985
VneI GTGCAC 1 cut(s) 2045
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 5 cut(s) 375, 1553, 1665, 1901, 1939
XceI RCATGY 4 cut(s) 68, 314, 814, 2085
XcmI CCANNNNNNNNNTGG 1 cut(s) 1065
XmiI GTMKAC 1 cut(s) 807
XmnI GAANNNNTTC 1 cut(s) 1047
XspI CTAG 4 cut(s) 687, 908, 1610, 2196
ZrmI AGTACT 1 cut(s) 118
Zsp2I ATGCAT 2 cut(s) 363, 2083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.