RchiOBHm_Chr7g0190901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016677
Physical Location & Seq
Reverse (-)
9801110 .. 9802748
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGTTTGGGAGAGTAAGAGCCTCGTCCTCTCCGGCCGACAGCTTGGAGAGGCCGCCTTCCAAGATTTTCAAGGACGATACTCTCTCCATCTACGAGGCTACACTGATGAAGCTTAAATTGGGTTCAAAACGTAATCTAAGTCCGTGCTCTAATGAGGTAGGGGAGATGGATGCCGGTTCTAATTCAAGTTCTCCTGACTCAGAGCCAATGAACATAGAGGTGAACTGTGTTTCTTCGGGAACTTCAAGCTCTCCTGATTTGGTTGCCAGCTCCCCACAGGAGGAGGTTGCCACATTAGATACAGATTGTTCTTCAGAAACAAGTTCAATAAGTTCGAGTGATTGTAATTCTGGGGGCACCTCAAAGCAGCCAAGGAGTACAGAGGTTTCTGTTCTCTACCTCTTTTCTAAATTTAGGAGAGCTCACGATGCAATCAGCTCGTCCTCGGGGGAGGCAATGACAATTGATAGCGTTGGTATTTCTCCCAGTTCTAGTGGTTCTCGATCTCTTAACAACACAGAACAACAGTCGGAACAGGAATGCATCAGCTCTTTACCTGCCACCGAGATACATATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.35

Weight (kDa)

4.57

Isoelectric Point (pI)

79.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016677)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48490
fragaria_vesca FvH4_5g07590
malus_domestica MD06G1149100.v1.1 MD14G1163000.v1.1
prunus_persica Prupe.5G156300_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0190901
rosa_laevigata RLG00000004487
rosa_multiflora Rmu_sc0004443.1_g000020
rosa_samantha Rh1BG013800 Rh7AG114600 Rh7BG117000 Rh7CG120100 Rh7DG118400
rosa_wichuraiana Rw7G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 356
AciI CCGC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 5 cut(s) 70, 126, 186, 246, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 7 cut(s) 42, 112, 249, 270, 422, 438, 549
AluI AGCT 7 cut(s) 42, 112, 249, 270, 422, 438, 549
Alw21I GWGCWC 2 cut(s) 149, 424
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 2 cut(s) 33, 50
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 359
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 424
Bbv12I GWGCWC 2 cut(s) 149, 424
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 95, 160
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BfaI CTAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 565
BisI GCNGC 2 cut(s) 53, 368
BlsI GCNGC 2 cut(s) 54, 369
BmeT110I CYCGRG 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 358
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 3 cut(s) 160, 418, 552
BmuI ACTGGG 1 cut(s) 480
BsaJI CCNNGG 2 cut(s) 371, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 371, 444
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 359
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 379
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 35, 52
BshNI GGYRCC 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 149, 424
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 2 cut(s) 32, 174
BslI CCNNNNNNNGG 1 cut(s) 280
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 2 cut(s) 35, 52
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 3 cut(s) 149, 359, 424
Bsp143I GATC 1 cut(s) 503
BspACI CCGC 1 cut(s) 53
BspANI GGCC 2 cut(s) 35, 52
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 371, 444
BssMI GATC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 227, 528
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 137, 199
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 506
BstMBI GATC 1 cut(s) 503
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 379
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 35, 52
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 173
Csp6I GTAC 1 cut(s) 378
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 137, 199
DpnI GATC 1 cut(s) 505
DpnII GATC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 371
Eco24I GRGCYC 1 cut(s) 424
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 545
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 371
FaiI YATR 3 cut(s) 215, 573, 575
FauNDI CATATG 1 cut(s) 573
Fnu4HI GCNGC 2 cut(s) 53, 368
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 2 cut(s) 53, 368
FspBI CTAG 1 cut(s) 492
GluI GCNGC 2 cut(s) 53, 368
HaeIII GGCC 2 cut(s) 35, 52
HapII CCGG 2 cut(s) 32, 174
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 32, 174
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 202, 316, 532
Hpy188III TCNNGA 5 cut(s) 194, 237, 254, 425, 501
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 227, 528
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 431, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 2 cut(s) 137, 199
HpySE526I ACGT 1 cut(s) 130
Kzo9I GATC 1 cut(s) 503
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 3 cut(s) 160, 418, 552
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 130
MalI GATC 1 cut(s) 505
MboI GATC 1 cut(s) 503
MboII GAAGA 2 cut(s) 225, 303
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 3 cut(s) 149, 359, 424
MluCI AATT 5 cut(s) 116, 181, 346, 410, 462
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 545
MseI TTAA 2 cut(s) 114, 510
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 32, 174
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 545
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeI CATATG 1 cut(s) 573
NdeII GATC 1 cut(s) 503
NlaIV GGNNCC 1 cut(s) 358
NsiI ATGCAT 1 cut(s) 545
PctI GAATGC 1 cut(s) 545
PkrI GCNGC 2 cut(s) 54, 369
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 358
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 114, 510
SatI GCNGC 2 cut(s) 53, 368
Sau3AI GATC 1 cut(s) 503
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 3 cut(s) 149, 359, 424
SfaNI GCATC 3 cut(s) 160, 418, 552
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 5 cut(s) 116, 181, 346, 410, 462
SsiI CCGC 1 cut(s) 53
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 424
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 2 cut(s) 227, 528
TaiI ACGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 335, 502
TasI AATT 5 cut(s) 116, 181, 346, 410, 462
TatI WGTACW 1 cut(s) 377
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 2 cut(s) 114, 510
Tru9I TTAA 2 cut(s) 114, 510
TscAI CASTG 1 cut(s) 108
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 122, 224
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 410
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.