Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018046

Physical Location & Seq

Genomic Coordinates Forward (+)

33394968 .. 33395581

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATCAACCGTTCAATGTTTCCCCAAGAGCTTGAGCCTCATGTAGAGTCTCCAAAGATCCTTGAAAATGAGGTGGGTGAACAGCTGATGGCCCCGCAAAAGATTGCCACGGTGAAGATGGAAATGGTAGCTGATGATGATGAGAAGATGAGAATGTACGAGAGAGCACGAATGGCTGTTGAGGCTTGTGACAGGGAACTTCTGGAAAAGACCAGGAAATATGAAGAACTAATGCTGGAGAAGCACAAAAAGAAGATGCAAGTCCAACAGCTGGAGAAGATTGTGAGGCTTAAACTTGCAGAGGCTGATATGTTCCAACTCAAGGTCAATGAGGCAAAACAAGAGGTGCTGAGGCTCCAGAAGATTGCTCTTGTGTCGGAAGAAGAATATGCTAACAGCCACCTGAAACAACAATTGAGGGAAGCCGCGGCAGAGAAGCAGTATCTAATTGAGAAGATTAAACTCGAAGAACATTCACAGGCATCCAACAACTGTGGTGGTGGTGGTGGTCCTGCTCAGACATTGATTCATTCGAAAATGGATGATCTGCTTTACAGTGACACTCCTAAGACGGAGTTTAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0007275 GO:0008150 GO:0009536 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010015 GO:0010071 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010468 GO:0010492 GO:0016032 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031347 GO:0032501 GO:0032502 GO:0040011 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046740 GO:0046794 GO:0046982 GO:0046983 GO:0048316 GO:0048364 GO:0048507 GO:0048508 GO:0048532 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0060255 GO:0061458 GO:0065007 GO:0080022 GO:0080134 GO:0090421 GO:0098727 GO:0099402 GO:1902579 GO:1902586 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oberon_cc PHD_Oberon

Protein Analysis

195

Amino Acids

22.69

Weight (kDa)

5.54

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oberon_cc	PF16312	54 - 184	2.2e-32	Coiled-coil region of Oberon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25480 FvH4_7g06700
rosa_chinensis	RchiOBHm_Chr7g0215721
rosa_laevigata	RLG00000002631
rosa_multiflora	Rmu_co8284905.1_g000001 Rmu_sc0000898.1_g000017
rosa_roxburghii	Rroxscaffold_3G00243900
rosa_samantha	Rh7AG293300 Rh7BG285600 Rh7CG313400 Rh7DG296600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccII	CGCG	1 cut(s)	428
AciI	CCGC	3 cut(s)	95, 426, 428
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	271, 322
AgsI	TTSAA	2 cut(s)	15, 65
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	4 cut(s)	31, 85, 131, 271
AluI	AGCT	4 cut(s)	31, 85, 131, 271
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	52
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	91, 509
AsuHPI	GGTGA	2 cut(s)	89, 124
AsuII	TTCGAA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	82, 112
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	426, 429
BlsI	GCNGC	2 cut(s)	427, 430
Bme1390I	CCNGG	1 cut(s)	214
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	91, 509
BmiI	GGNNCC	2 cut(s)	93, 356
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	2 cut(s)	246, 491
BpmI	CTGGAG	3 cut(s)	257, 293, 341
Bpu10I	CCTNAGC	1 cut(s)	350
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	53, 305
BsaJI	CCNNGG	2 cut(s)	108, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 322
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	108, 426
BseGI	GGATG	2 cut(s)	482, 547
BseLI	CCNNNNNNNGG	2 cut(s)	271, 322
BseMII	CTCAG	2 cut(s)	341, 530
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	271, 322
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	3, 57, 544
BspACI	CCGC	3 cut(s)	95, 426, 428
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	342, 529
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	2 cut(s)	93, 356
BspPI	GGATC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	533
BssECI	CCNNGG	2 cut(s)	108, 426
BssMI	GATC	3 cut(s)	3, 57, 544
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	4 cut(s)	11, 112, 494, 557
BstBI	TTCGAA	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	350, 516, 567
BstDSI	CCRYGG	2 cut(s)	108, 426
BstF5I	GGATG	2 cut(s)	482, 547
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	3 cut(s)	6, 60, 547
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	3, 57, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 241
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	212
BstUI	CGCG	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	108, 426
BtsCI	GGATG	2 cut(s)	482, 547
BtsIMutI	CAGTG	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	91, 509
Cfr42I	CCGCGG	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	4 cut(s)	475, 478, 510, 513
CviAII	CATG	1 cut(s)	41
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	350, 516, 567
DpnI	GATC	3 cut(s)	5, 59, 546
DpnII	GATC	3 cut(s)	3, 57, 544
Eco47I	GGWCC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	44
FaiI	YATR	4 cut(s)	42, 222, 311, 390
FatI	CATG	1 cut(s)	40
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	426, 429
FokI	GGATG	2 cut(s)	469, 554
Fsp4HI	GCNGC	2 cut(s)	426, 429
GluI	GCNGC	2 cut(s)	426, 429
GsuI	CTGGAG	3 cut(s)	257, 293, 341
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	2 cut(s)	47, 526
HphI	GGTGA	2 cut(s)	89, 124
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	2 cut(s)	379, 519
Hpy188III	TCNNGA	2 cut(s)	203, 358
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4III	ACNGT	4 cut(s)	11, 112, 494, 557
HpyCH4V	TGCA	2 cut(s)	259, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 241
HpyF3I	CTNAG	3 cut(s)	350, 516, 567
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	3, 57, 544
LmnI	GCTCC	1 cut(s)	360
LweI	GCATC	2 cut(s)	246, 491
MaeIII	GTNAC	2 cut(s)	188, 557
MalI	GATC	3 cut(s)	5, 59, 546
MboI	GATC	3 cut(s)	3, 57, 544
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	413, 447, 580
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	4 cut(s)	289, 340, 357, 510
MnlI	CCTC	9 cut(s)	48, 64, 175, 279, 295, 325, 337, 345, 411
MseI	TTAA	3 cut(s)	291, 459, 579
MspA1I	CMGCKG	3 cut(s)	85, 271, 428
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 241
NdeII	GATC	3 cut(s)	3, 57, 544
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	2 cut(s)	93, 356
NmuCI	GTSAC	2 cut(s)	188, 557
NspV	TTCGAA	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	526
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	427, 430
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	93, 356
PspPI	GGNCC	2 cut(s)	91, 509
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	57
PvuII	CAGCTG	2 cut(s)	85, 271
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	291, 459, 579
SatI	GCNGC	2 cut(s)	426, 429
Sau3AI	GATC	3 cut(s)	3, 57, 544
Sau96I	GGNCC	2 cut(s)	91, 509
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	8 cut(s)	33, 75, 87, 133, 273, 327, 348, 405
SfaNI	GCATC	2 cut(s)	246, 491
Sfr303I	CCGCGG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	533
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	32, 320
SmoI	CTYRAG	2 cut(s)	32, 320
Sse9I	AATT	3 cut(s)	413, 447, 580
SsiI	CCGC	3 cut(s)	95, 426, 428
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	4 cut(s)	11, 112, 494, 557
TaqI	TCGA	2 cut(s)	465, 533
TasI	AATT	3 cut(s)	413, 447, 580
TauI	GCSGC	2 cut(s)	428, 431
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	3 cut(s)	291, 459, 579
Tru9I	TTAA	3 cut(s)	291, 459, 579
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	188, 557
Tsp45I	GTSAC	2 cut(s)	188, 557
TspDTI	ATGAA	2 cut(s)	237, 518
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	562
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.