RchiOBHm_Chr7g0222811

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008148
Physical Location & Seq
Reverse (-)
44433813 .. 44435129
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
ATGATGCTTGGTGGGAAGGTGTCATCTTTGATCATGATGCTGATTCAGGAGAGGATGATCTTCTTTCCGGATCTGGGGGACGAGCTCAAGACTGGAATTGACACTCTGCGAATTACTCAGGACTGGGATGAGTTTACGGACAATTGGCGGCAGCGTGGGATTTGGGTGTTTCTTGAGCTGATTCAGAAATACAAGCAAGAATGGTACATTGCTGGTGTTTCCCTGAAGCAGATTTGGTATGACGTGCGAGACAAGGAGGAGTTTGAGGAGCAGATCAAGGAGTGGACGTGCCCGATTAGAGATGTGTGGGAAGAGCTGGTGGTGAAGGTAATTGATGATAACATAAACATCACTGTAGACACACTGCTTGGTTTTTTGGATTTGCCAAGATGCATGTCATCAGAGGCAGAAGGGACCCAGGTAGAATTGGATTCTGCTGATTTTGTTTCTGATGCTAATCTGAGTCCTTTTCCCTGGTTATGTGACCAGTTCCTAAAGAATCCTAAATCCAACATGGTAGTCCCTTTTCCTGATGTAACCAAGTGTATTCTGCCATTGGAAGATAAGAACCGGTTGAGTTGTAACCAAGTATATTCTAGGAAGAGAACTGGTAGTTTAAAGAGGAGATTGGGAACACCGCAGATGGCAACTCCAAGTACTACAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

222

Amino Acids

25.86

Weight (kDa)

4.72

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 2 cut(s) 148, 638
AclWI GGATC 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 2 cut(s) 206, 658
AfiI CCNNNNNNNGG 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 570
AjiI CACGTC 2 cut(s) 244, 288
AjnI CCWGG 2 cut(s) 417, 473
AluBI AGCT 4 cut(s) 85, 178, 316, 666
AluI AGCT 4 cut(s) 85, 178, 316, 666
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 78
Aor13HI TCCGGA 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 151
AsiGI ACCGGT 1 cut(s) 570
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 637
BciT130I CCWGG 2 cut(s) 419, 475
BclI TGATCA 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 2 cut(s) 149, 152
BlsI GCNGC 2 cut(s) 150, 153
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 419, 475
Bme18I GGWCC 1 cut(s) 414
BmgBI CACGTC 2 cut(s) 244, 288
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 415, 416
BmrFI CCNGG 2 cut(s) 419, 475
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 3 cut(s) 27, 380, 442
BmuI ACTGGG 1 cut(s) 133
BpuEI CTTGAG 2 cut(s) 71, 194
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 417, 473
BsaWI WCCGGW 2 cut(s) 67, 570
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 570
Bse1I ACTGG 4 cut(s) 97, 128, 487, 613
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 2 cut(s) 419, 475
BseDI CCNNGG 2 cut(s) 417, 473
BseGI GGATG 2 cut(s) 60, 133
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 131, 452
BseNI ACTGG 4 cut(s) 97, 128, 487, 613
BseRI GAGGAG 3 cut(s) 272, 281, 637
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 1 cut(s) 163
BshTI ACCGGT 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 2 cut(s) 68, 571
BslFI GGGAC 3 cut(s) 92, 427, 506
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 3 cut(s) 92, 427, 506
Bsp1286I GDGCHC 2 cut(s) 87, 293
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 4 cut(s) 30, 57, 70, 273
BspACI CCGC 2 cut(s) 148, 638
BspCNI CTCAG 2 cut(s) 130, 453
BspEI TCCGGA 1 cut(s) 67
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 415, 416
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 570
BsrI ACTGG 4 cut(s) 97, 128, 487, 613
BssAI RCCGGY 1 cut(s) 570
BssECI CCNNGG 2 cut(s) 417, 473
BssMI GATC 4 cut(s) 30, 57, 70, 273
Bst2UI CCWGG 2 cut(s) 419, 475
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 306, 596
BstDEI CTNAG 2 cut(s) 117, 461
BstF5I GGATG 2 cut(s) 60, 133
BstKTI GATC 4 cut(s) 33, 60, 73, 276
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 4 cut(s) 30, 57, 70, 273
BstNI CCWGG 2 cut(s) 419, 475
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 417, 473
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtrI CACGTC 2 cut(s) 244, 288
BtsCI GGATG 2 cut(s) 60, 133
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 351, 362
CciI TCATGA 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 2 cut(s) 205, 657
CspAI ACCGGT 1 cut(s) 570
CviAII CATG 3 cut(s) 34, 394, 514
CviJI RGCY 4 cut(s) 85, 178, 316, 666
CviKI_1 RGCY 4 cut(s) 85, 178, 316, 666
CviQI GTAC 2 cut(s) 205, 657
DdeI CTNAG 2 cut(s) 117, 461
DpnI GATC 4 cut(s) 32, 59, 72, 275
DpnII GATC 4 cut(s) 30, 57, 70, 273
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 306, 596
EarI CTCTTC 2 cut(s) 306, 596
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 417, 473
EcoT22I ATGCAT 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 3 cut(s) 37, 397, 517
FaiI YATR 7 cut(s) 35, 240, 344, 395, 481, 515, 592
FaqI GGGAC 3 cut(s) 92, 427, 506
FatI CATG 3 cut(s) 33, 393, 513
FbaI TGATCA 1 cut(s) 30
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 149, 152
FokI GGATG 2 cut(s) 67, 140
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 2 cut(s) 149, 152
FspBI CTAG 1 cut(s) 597
GluI GCNGC 2 cut(s) 149, 152
HapII CCGG 2 cut(s) 68, 571
Hin1II CATG 3 cut(s) 37, 397, 517
HinfI GANTC 5 cut(s) 43, 181, 431, 463, 499
HpaII CCGG 2 cut(s) 68, 571
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 135, 285, 358
Hpy188I TCNGA 4 cut(s) 186, 403, 451, 462
Hpy188III TCNNGA 7 cut(s) 34, 47, 68, 88, 119, 173, 530
Hpy8I GTNNAC 3 cut(s) 135, 285, 358
HpyAV CCTTC 3 cut(s) 10, 319, 404
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 243, 287
HpyCH4V TGCA 1 cut(s) 393
HpyF3I CTNAG 2 cut(s) 117, 461
HpySE526I ACGT 2 cut(s) 243, 287
Hsp92II CATG 3 cut(s) 37, 397, 517
KflI GGGWCCC 1 cut(s) 414
Kpn2I TCCGGA 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 4 cut(s) 30, 57, 70, 273
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 3 cut(s) 27, 380, 442
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 243, 287
MaeIII GTNAC 3 cut(s) 482, 535, 581
MalI GATC 4 cut(s) 32, 59, 72, 275
MboI GATC 4 cut(s) 30, 57, 70, 273
MboII GAAGA 4 cut(s) 52, 323, 572, 613
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 87, 293
MluCI AATT 5 cut(s) 96, 111, 142, 330, 425
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 5 cut(s) 45, 250, 259, 397, 615
Mph1103I ATGCAT 1 cut(s) 395
MroI TCCGGA 1 cut(s) 67
MseI TTAA 1 cut(s) 617
MspI CCGG 2 cut(s) 68, 571
MspR9I CCNGG 2 cut(s) 419, 475
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 2 cut(s) 419, 475
NdeII GATC 4 cut(s) 30, 57, 70, 273
NlaIII CATG 3 cut(s) 37, 397, 517
NlaIV GGNNCC 2 cut(s) 415, 416
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 395
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 306
PfeI GAWTC 4 cut(s) 43, 181, 431, 499
PinAI ACCGGT 1 cut(s) 570
PkrI GCNGC 2 cut(s) 150, 153
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
PpuMI RGGWCCY 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 417, 473
PspGI CCWGG 2 cut(s) 417, 473
PspN4I GGNNCC 2 cut(s) 415, 416
PspPI GGNCC 1 cut(s) 414
PspPPI RGGWCCY 1 cut(s) 414
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 206, 658
RsaNI GTAC 2 cut(s) 205, 657
SacI GAGCTC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 617
SatI GCNGC 2 cut(s) 149, 152
Sau3AI GATC 4 cut(s) 30, 57, 70, 273
Sau96I GGNCC 1 cut(s) 414
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 2 cut(s) 419, 475
SduI GDGCHC 2 cut(s) 87, 293
SetI ASST 9 cut(s) 21, 87, 180, 246, 290, 318, 330, 423, 668
SfaNI GCATC 3 cut(s) 27, 380, 442
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 414
SmlI CTYRAG 2 cut(s) 86, 173
SmoI CTYRAG 2 cut(s) 86, 173
Sse9I AATT 5 cut(s) 96, 111, 142, 330, 425
SsiI CCGC 2 cut(s) 148, 638
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 417, 473
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 2 cut(s) 246, 290
TasI AATT 5 cut(s) 96, 111, 142, 330, 425
TatI WGTACW 1 cut(s) 656
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 4 cut(s) 43, 181, 431, 499
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TscAI CASTG 2 cut(s) 358, 369
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 358, 369
VpaK11BI GGWCC 1 cut(s) 414
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 658
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.