Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013014.1

Orthogroup ID

OG0008148

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 973

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

atggcccttgaagaacagggccggcgtgttaataagagaaaccataatttgagacaaaatcaagggaagttactttttggtgccaaagttgaggtgaggagtgaagaagaagggtttcagggctcatggcaccctgggactatcactgcatgcaccaaaggttgtcgtaaagtagaatatgatcacattctatgtgatgatgggtctgctaatcttgtggatgctgtttatgtttctcccatattggatggcattgattctgtaactgatgagcagagtaattaccatcgcggaagtataaggccaaagccgcctaagattgaggtaggggcatggggtcttccctatggaatctgtgtggatgtgtatcatcaggatgcatggtgggaaggtgtggtttttgatcatgaagatggttcagaaaagaggaagatcttctttccggatttgggagatgaactaacaactggaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1 Agenet Jas PHD

Protein Analysis

158

Amino Acids

17.76

Weight (kDa)

5.2

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008148)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g26070 FvH4_6g26070 FvH4_6g26070 FvH4_6g26070 FvH4_6g26070
rosa_chinensis	RchiOBHm_Chr7g0222811 RchiOBHm_Chr7g0222821 RchiOBHm_Chr7g0224411
rosa_laevigata	RLG00000001896
rosa_multiflora	Rmu_co8174364.1_g000001 Rmu_sc0002881.1_g000001 Rmu_sc0006366.1_g000017 Rmu_sc0013014.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234790
rosa_rugosa	Rorug07G0223100
rosa_samantha	Rh7AG357000 Rh7AG380400 Rh7BG359200 Rh7CG374400 Rh7CG399800 Rh7DG351400 Rh7DG368900
rosa_wichuraiana	Rw7G030290 Rw7G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 129
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	291, 311
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	3 cut(s)	3, 19, 302
Asp700I	GAANNNNTTC	2 cut(s)	114, 434
AspS9I	GGNCC	2 cut(s)	4, 19
AsuHPI	GGTGA	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	80, 129
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	332
BccI	CCATC	4 cut(s)	194, 242, 294, 407
BciT130I	CCWGG	1 cut(s)	135
BclI	TGATCA	2 cut(s)	181, 403
BcoDI	GTCTC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	4, 19
BmiI	GGNNCC	2 cut(s)	82, 131
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	211, 367
BpiI	GAAGAC	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	133, 134
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	133, 134
BseGI	GGATG	4 cut(s)	226, 253, 367, 382
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	5, 21, 304
BshNI	GGYRCC	2 cut(s)	80, 129
BsiSI	CCGG	2 cut(s)	22, 443
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	5, 21, 304
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	181, 403, 432
BspACI	CCGC	2 cut(s)	291, 311
BspANI	GGCC	3 cut(s)	5, 21, 304
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	82, 131
BspT107I	GGYRCC	2 cut(s)	80, 129
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	133, 134
BssMI	GATC	3 cut(s)	181, 403, 432
Bst2UI	CCWGG	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	23, 151
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	4 cut(s)	226, 253, 367, 382
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	3 cut(s)	184, 406, 435
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	181, 403, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	5, 21, 304
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	4 cut(s)	226, 253, 367, 382
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	23, 151
CciI	TCATGA	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	4, 19
CviAII	CATG	5 cut(s)	126, 150, 333, 381, 407
CviJI	RGCY	5 cut(s)	5, 21, 123, 304, 310
CviKI_1	RGCY	5 cut(s)	5, 21, 123, 304, 310
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	3 cut(s)	183, 405, 434
DpnII	GATC	3 cut(s)	181, 403, 432
Eco24I	GRGCYC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	5 cut(s)	129, 153, 336, 384, 410
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	5 cut(s)	125, 149, 332, 380, 406
FbaI	TGATCA	2 cut(s)	181, 403
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	4 cut(s)	233, 260, 374, 389
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	5, 21, 304
HapII	CCGG	2 cut(s)	22, 443
Hin1II	CATG	5 cut(s)	129, 153, 336, 384, 410
HinfI	GANTC	2 cut(s)	257, 351
HpaII	CCGG	2 cut(s)	22, 443
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	374, 407, 443
HpyAV	CCTTC	2 cut(s)	104, 383
HpyCH4V	TGCA	3 cut(s)	149, 153, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	5 cut(s)	129, 153, 336, 384, 410
Kpn2I	TCCGGA	1 cut(s)	442
KroI	GCCGGC	1 cut(s)	21
KroNI	GCCGGC	1 cut(s)	23
Ksp22I	TGATCA	2 cut(s)	181, 403
Kzo9I	GATC	3 cut(s)	181, 403, 432
LpnPI	CCDG	8 cut(s)	2, 35, 104, 120, 147, 359, 453, 456
LweI	GCATC	2 cut(s)	211, 367
MaeIII	GTNAC	2 cut(s)	69, 262
MalI	GATC	3 cut(s)	183, 405, 434
MboI	GATC	3 cut(s)	181, 403, 432
MboII	GAAGA	7 cut(s)	23, 116, 119, 332, 422, 427, 442
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	3 cut(s)	46, 280, 471
MnlI	CCTC	4 cut(s)	85, 90, 316, 420
Mph1103I	ATGCAT	1 cut(s)	382
MroI	TCCGGA	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	21
MroXI	GAANNNNTTC	2 cut(s)	114, 434
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	375, 411
MspI	CCGG	2 cut(s)	22, 443
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	310
NaeI	GCCGGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	181, 403, 432
NgoMIV	GCCGGC	1 cut(s)	21
NlaIII	CATG	5 cut(s)	129, 153, 336, 384, 410
NlaIV	GGNNCC	2 cut(s)	82, 131
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PagI	TCATGA	1 cut(s)	406
PasI	CCCWGGG	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	23
PdmI	GAANNNNTTC	2 cut(s)	114, 434
PfeI	GAWTC	2 cut(s)	257, 351
PkrI	GCNGC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	2 cut(s)	82, 131
PspPI	GGNCC	2 cut(s)	4, 19
PsuI	RGATCY	1 cut(s)	432
RseI	CAYNNNNRTG	2 cut(s)	375, 411
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	3 cut(s)	181, 403, 432
Sau96I	GGNCC	2 cut(s)	4, 19
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	4 cut(s)	96, 163, 327, 394
SfaNI	GCATC	2 cut(s)	211, 367
SmiMI	CAYNNNNRTG	2 cut(s)	375, 411
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	3 cut(s)	46, 280, 471
SsiI	CCGC	2 cut(s)	291, 311
StyD4I	CCNGG	1 cut(s)	133
TasI	AATT	3 cut(s)	46, 280, 471
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	257, 351
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	423, 471
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	1 cut(s)	153
XmnI	GAANNNNTTC	2 cut(s)	114, 434
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.