RLG00000001896

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008148
Physical Location & Seq
Forward (+)
22713467 .. 22714733
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001896

Sequence Viewer

Length: 897 bp
ATGGCTGCATCAGAATCTAGGAAGAGAAAGCAGCCTACTCACAGAAAGCTACTCAGAAATGCCAAAGTCGAAATGACGAGTGAAGAAGAAGGGTTTCAGGGCTCCTGGCACCCGGGGACTGTAATTTCCGTCGACTGCAAACGACGTCGTCACGTTCAGTACCATTATTTTCTGAACGATGATGGTGATAGTCTTGTTGATGTTGTTTCCGTTTCACCCATTTTGGATGGCATTGATTCCGGCAATTTGAGATTGATATGTATTATCATTTCAGAGGAGAGGATGATCTTCTTTCCGGATCTGGGGGACGAGCTCAAGACTGGAATCGACACTCTGCGAATTACTCAGGACTGGGATGAGGTTACAGACAATTGGCGGCAGCGTGGGATTTGGGTGTTTCTTGAGCTGATTCAGAAATACAAGCAAGAATGGTACATTGCTGGTGTTTCCCTGAAGCAGATTTGGTATGACGTGCGGGACAAGGACGGGTTTGAGGAGCAGATCAAGGAGTGGACGTGCCCGATTAGAGATGTGTGGGAAGAGGTGGTTGTGATGGTAATTGATGATAACGTAAACATCACTGTGGACACACTGCTTGGTTTTTTGGATTTGCCAAGATGCATGTCACCAGAGGCAGAAGAGAGCCAGGTAGAATTGGATTCTGCTGGTTTTGTTTCTGATGTTAATCTGAATCCATTTTCCTGGTCTTGTGACCAATTCCTAAAGAATCGTAAATCCGAAGTGGTAGTCCCTTTTCCTGATATAACCAAGTGTATTCTGCCTTTGGAAGATAAGAACCGGTTGAGTTGCAACCGAGTATATTCTAGGAAGAGAATCGGTAGGTTTAACAGGAGATTGGGAACACCGCAGATGGCAACTCCAAATACTGCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003690 GO:0003712 GO:0003714 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0030334 GO:0030336 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032879 GO:0032991 GO:0033558 GO:0035064 GO:0035601 GO:0036211 GO:0040012 GO:0040013 GO:0042393 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051270 GO:0051271 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070577 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140030 GO:0140033 GO:0140034 GO:0140096 GO:0140097 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903756 GO:1903758 GO:1904949 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000146 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Agenet Jas PHD

Protein Analysis

299

Amino Acids

34.59

Weight (kDa)

5.16

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 21 - 72 1.6e-10 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 3 cut(s) 376, 475, 866
AclWI GGATC 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 2 cut(s) 161, 434
AfiI CCNNNNNNNGG 1 cut(s) 302
AgeI ACCGGT 1 cut(s) 798
AjiI CACGTC 2 cut(s) 472, 516
AjnI CCWGG 3 cut(s) 104, 645, 701
AluBI AGCT 4 cut(s) 49, 313, 406, 894
AluI AGCT 4 cut(s) 49, 313, 406, 894
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 295
ApeKI GCWGC 3 cut(s) 5, 31, 379
ArsI GACNNNNNNTTYG 2 cut(s) 732, 764
AsiGI ACCGGT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 93
AsuC2I CCSGG 2 cut(s) 113, 114
AsuHPI GGTGA 3 cut(s) 197, 207, 618
AvaI CYCGRG 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 2 cut(s) 104, 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 43, 391
BccI CCATC 4 cut(s) 176, 221, 547, 865
BciT130I CCWGG 3 cut(s) 106, 647, 703
BcnI CCSGG 2 cut(s) 113, 114
BfaI CTAG 2 cut(s) 18, 825
BisI GCNGC 4 cut(s) 6, 32, 377, 380
BlsI GCNGC 4 cut(s) 7, 33, 378, 381
Bme1390I CCNGG 5 cut(s) 106, 113, 114, 647, 703
BmeT110I CYCGRG 1 cut(s) 112
BmgBI CACGTC 2 cut(s) 472, 516
BmiI GGNNCC 2 cut(s) 103, 110
BmrFI CCNGG 5 cut(s) 106, 113, 114, 647, 703
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 17, 608
BmuI ACTGGG 1 cut(s) 361
BpuEI CTTGAG 2 cut(s) 299, 422
BpuMI CCSGG 2 cut(s) 113, 114
BsaBI GATNNNNATC 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 112, 113
BsaWI WCCGGW 2 cut(s) 295, 798
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 798
Bse1I ACTGG 2 cut(s) 325, 356
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 684
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 3 cut(s) 106, 647, 703
BseDI CCNNGG 2 cut(s) 112, 113
BseGI GGATG 3 cut(s) 232, 288, 361
BseJI GATNNNNATC 1 cut(s) 684
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 67, 359
BseNI ACTGG 2 cut(s) 325, 356
BseRI GAGGAG 2 cut(s) 290, 509
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 2 cut(s) 43, 391
BshNI GGYRCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 4 cut(s) 113, 240, 296, 799
BslFI GGGAC 4 cut(s) 130, 320, 491, 734
BslI CCNNNNNNNGG 1 cut(s) 302
BsmFI GGGAC 4 cut(s) 130, 320, 491, 734
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 104, 315, 521
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 3 cut(s) 285, 298, 501
BspACI CCGC 3 cut(s) 376, 475, 866
BspCNI CTCAG 2 cut(s) 66, 358
BspEI TCCGGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 103, 110
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 798
BsrI ACTGG 2 cut(s) 325, 356
BssAI RCCGGY 1 cut(s) 798
BssECI CCNNGG 2 cut(s) 112, 113
BssMI GATC 3 cut(s) 285, 298, 501
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 3 cut(s) 106, 647, 703
Bst4CI ACNGT 2 cut(s) 121, 583
Bst6I CTCTTC 4 cut(s) 17, 534, 633, 824
BstACI GRCGYC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 892
BstDEI CTNAG 2 cut(s) 53, 345
BstF5I GGATG 3 cut(s) 232, 288, 361
BstKTI GATC 3 cut(s) 288, 301, 504
BstMBI GATC 3 cut(s) 285, 298, 501
BstNI CCWGG 3 cut(s) 106, 647, 703
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 5 cut(s) 104, 111, 112, 645, 701
BstSLI GKGCMC 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 43, 391
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 1 cut(s) 298
BtrI CACGTC 2 cut(s) 472, 516
BtsCI GGATG 3 cut(s) 232, 288, 361
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 2 cut(s) 579, 590
Cac8I GCNNGC 1 cut(s) 892
Cfr10I RCCGGY 1 cut(s) 798
Cfr9I CCCGGG 1 cut(s) 112
Csp6I GTAC 2 cut(s) 160, 433
CspAI ACCGGT 1 cut(s) 798
CviAII CATG 1 cut(s) 622
CviJI RGCY 8 cut(s) 5, 34, 49, 102, 313, 406, 645, 894
CviKI_1 RGCY 8 cut(s) 5, 34, 49, 102, 313, 406, 645, 894
CviQI GTAC 2 cut(s) 160, 433
DdeI CTNAG 2 cut(s) 53, 345
DpnI GATC 3 cut(s) 287, 300, 503
DpnII GATC 3 cut(s) 285, 298, 501
Eam1104I CTCTTC 4 cut(s) 17, 534, 633, 824
EarI CTCTTC 4 cut(s) 17, 534, 633, 824
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 2 cut(s) 104, 315
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 104, 645, 701
EcoT22I ATGCAT 1 cut(s) 623
EcoT38I GRGCYC 2 cut(s) 104, 315
FaeI CATG 1 cut(s) 625
FaiI YATR 5 cut(s) 259, 468, 623, 764, 820
FaqI GGGAC 4 cut(s) 130, 320, 491, 734
FatI CATG 1 cut(s) 621
FauI CCCGC 1 cut(s) 468
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 6, 32, 377, 380
FokI GGATG 3 cut(s) 239, 295, 368
FriOI GRGCYC 2 cut(s) 104, 315
Fsp4HI GCNGC 4 cut(s) 6, 32, 377, 380
FspBI CTAG 2 cut(s) 18, 825
GluI GCNGC 4 cut(s) 6, 32, 377, 380
HapII CCGG 4 cut(s) 113, 240, 296, 799
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 1 cut(s) 625
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 8 cut(s) 14, 236, 324, 409, 659, 691, 727, 834
HpaII CCGG 4 cut(s) 113, 240, 296, 799
HphI GGTGA 3 cut(s) 197, 207, 618
Hpy166II GTNNAC 4 cut(s) 133, 513, 574, 586
Hpy188I TCNGA 8 cut(s) 13, 56, 174, 274, 414, 679, 690, 739
Hpy188III TCNNGA 5 cut(s) 296, 316, 347, 401, 758
Hpy8I GTNNAC 4 cut(s) 133, 513, 574, 586
Hpy99I CGWCG 3 cut(s) 134, 147, 150
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 121, 583
HpyCH4IV ACGT 5 cut(s) 145, 153, 471, 515, 570
HpyCH4V TGCA 5 cut(s) 8, 138, 621, 810, 890
HpyF3I CTNAG 2 cut(s) 53, 345
HpySE526I ACGT 5 cut(s) 145, 153, 471, 515, 570
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 625
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 3 cut(s) 285, 298, 501
LmnI GCTCC 2 cut(s) 107, 496
Lsp1109I GCAGC 2 cut(s) 43, 391
LweI GCATC 2 cut(s) 17, 608
MaeI CTAG 2 cut(s) 18, 825
MaeII ACGT 5 cut(s) 145, 153, 471, 515, 570
MaeIII GTNAC 4 cut(s) 149, 361, 624, 710
MalI GATC 3 cut(s) 287, 300, 503
MboI GATC 3 cut(s) 285, 298, 501
MboII GAAGA 8 cut(s) 34, 95, 98, 280, 551, 650, 800, 841
MfeI CAATTG 1 cut(s) 370
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 3 cut(s) 104, 315, 521
MluCI AATT 7 cut(s) 123, 244, 339, 370, 558, 653, 716
MnlI CCTC 6 cut(s) 268, 273, 352, 487, 535, 625
Mph1103I ATGCAT 1 cut(s) 623
MroI TCCGGA 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 684, 846
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 4 cut(s) 113, 240, 296, 799
MspR9I CCNGG 5 cut(s) 106, 113, 114, 647, 703
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 3 cut(s) 106, 647, 703
NciI CCSGG 2 cut(s) 113, 114
NdeII GATC 3 cut(s) 285, 298, 501
NlaIII CATG 1 cut(s) 625
NlaIV GGNNCC 2 cut(s) 103, 110
NmuCI GTSAC 3 cut(s) 149, 624, 710
NsiI ATGCAT 1 cut(s) 623
NspI RCATGY 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 8 cut(s) 14, 236, 324, 409, 659, 691, 727, 834
PflFI GACNNNGTC 1 cut(s) 147
PinAI ACCGGT 1 cut(s) 798
PkrI GCNGC 4 cut(s) 7, 33, 378, 381
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 3 cut(s) 104, 645, 701
PspGI CCWGG 3 cut(s) 104, 645, 701
PspN4I GGNNCC 2 cut(s) 103, 110
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 2 cut(s) 161, 434
RsaNI GTAC 2 cut(s) 160, 433
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 684, 846
SatI GCNGC 4 cut(s) 6, 32, 377, 380
Sau3AI GATC 3 cut(s) 285, 298, 501
ScrFI CCNGG 5 cut(s) 106, 113, 114, 647, 703
SduI GDGCHC 3 cut(s) 104, 315, 521
SfaNI GCATC 2 cut(s) 17, 608
SmaI CCCGGG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 314, 401
SmoI CTYRAG 2 cut(s) 314, 401
Sse9I AATT 7 cut(s) 123, 244, 339, 370, 558, 653, 716
SsiI CCGC 3 cut(s) 376, 475, 866
SspMI CTAG 2 cut(s) 18, 825
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 5 cut(s) 104, 111, 112, 645, 701
TaaI ACNGT 2 cut(s) 121, 583
TaiI ACGT 5 cut(s) 148, 156, 474, 518, 573
TaqI TCGA 3 cut(s) 69, 132, 327
TasI AATT 7 cut(s) 123, 244, 339, 370, 558, 653, 716
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 8 cut(s) 14, 236, 324, 409, 659, 691, 727, 834
Tru1I TTAA 2 cut(s) 684, 846
Tru9I TTAA 2 cut(s) 684, 846
TscAI CASTG 2 cut(s) 586, 597
TseFI GTSAC 3 cut(s) 149, 624, 710
TseI GCWGC 3 cut(s) 5, 31, 379
Tsp45I GTSAC 3 cut(s) 149, 624, 710
TspGWI ACGGA 2 cut(s) 118, 199
TspMI CCCGGG 1 cut(s) 112
TspRI CASTG 2 cut(s) 586, 597
Tth111I GACNNNGTC 1 cut(s) 147
XceI RCATGY 1 cut(s) 625
XmaI CCCGGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 18, 825
ZraI GACGTC 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.